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GraphSynergy: Network Inspired Deep Learning Model for Anti-Cancer Drug Combination Prediction (ResearchSquare 2021)
- Jiannan Yang, Zhongzhi Xu, William Wu, Qian Chu, Qingpeng Zhang
- [Paper]
- [Tensorflow]
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Relation Matters in Sampling: A Scalable Multi-Relational Graph Neural Network for Drug-Drug Interaction Prediction (BioArxiv 2021)
- Arthur Feeney, Rishabh Gupta, Veronika Thost, Rico Angell, Gayathri Chandu, Yash Adhikari, Tengfei Ma
- [Paper]
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Drug-Drug Interaction Prediction with Wasserstein Adversarial Autoencoder-Based Knowledge Graph Embeddings (Bioinformatics 2021)
- Yuanfei Dai, Chenhao Guo, Wenzhong Guo, Carsten Eickhoff
- [Paper]
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Enhancing Drug-Drug Interaction Prediction Using Deep Attention Neural Networks (BioArxiv 2021)
- Shichao Liu, Yang Zhang, Yuxin Cui, Yang Qiu, Yifan Deng, Wen Zhang, Zhongfei Zhang
- [Paper]
- [Python TensorFlow]
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SumGNN: Multi-Typed Drug Interaction Prediction via Efficient Knowledge Graph Summarization (Bioinformatics 2021)
- Yue Yu, Kexin Huang, Chao Zhang, Lucas M Glass, Jimeng Sun, Cao Xiao
- [Paper]
- [Python PyTorch]
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GoGNN: Graph of Graphs Neural Network for Predicting Structured Entity Interactions (IJCAI 2020)
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SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Nature Scientific Reports 2020)
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KGNN: Knowledge Graph Neural Network for Drug-Drug Interaction Prediction (AAAI 2020)
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SkipGNN: Predicting Molecular Interactions with Skip-Graph Networks (Nature Scientific Reports 2020)
- Tri-graph Information Propagation for Polypharmacy Side Effect Prediction (NeurIPS 2019)
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Modeling Polypharmacy Side Effects with Graph Convolutional Networks (NeurIPS 2019)
- Marinka Zitnik, Monica Agrawal, Jure Leskovec
- [Paper]
- [Tensorflow]
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Adverse Drug Reaction Predictions Using Stacking Deep Heterogeneous Information Network Embedding Approach (MDPI 2018)
- Baofang Hu, Hong Wang, Lutong Wang and Weihua Yuan
- [Paper]
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Knowledge Graph Completion to Predict Polypharmacy Side Effects (MDPI 2018)
- Baofang Hu, Hong Wang, Lutong Wang and Weihua Yuan
- [Paper]
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Knowledge Graph Completion to Predict Polypharmacy Side Effects (DILS 2018)
- Brandon Malone, Alberto García-Durán, Mathias Niepert
- [Paper]