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examples

BluePyOpt Examples

This directory contains examples of optimizations that can be performed with BluePyOpt. They can be used to learn the concepts behind the package, and also as a starting point for other optimizations

  • expsyn: Example optimization of a synapse (a point process) in NEURON

  • graupnerbrunelstdp: Graupner-Brunel STDP model fitting

  • l5pc: Layer 5 pyramidal neuron parameter optimization

  • simplecell: optimisation of simple single compartmental cell with two free parameters

  • stochkv: simple cell optimization with stochastic channels

  • tsodyksmarkramstp: optimizing parameters of the Tsodyks-Markram model of short-term synaptic plasticity

The expsyn, l5pc and simplecell examples contain an implementation for Arbor as an alternative simulator backend to NEURON.

Documentation

Parallelization with ipyparallel