This code was created by Ruijie Cao and Prof. Peng Xi in Peking University for 3D super-resolution structure illumination microscopy reconstruction. We are devoted to make the SIM community open and constructive. And we will continue to improve the platform.
If you use our code, please cite our Bioxiv paper: Cao R, Li Y, Chen X, et al. Open-3DSIM: an Open-source three-dimensional structured illumination microscopy reconstruction platform[J]. bioRxiv, 2022: 2022.12. 16.520543.
- The Open-3DSIM.rar is the initial version of Open-3DSIM, including the Fiji version and MATLAB code, in a standalone rar file.
- The Open-3DSIM-v1.0.zip is the updated version of Open-3DSIM, adding the Exe application for the convenience of users.
- The Open_3DSIM_Exe_v1.0.zip, Open_3DSIM_Fiji_v1.0.zip and Open_3DSIM_MATLAB_v1.0.zip are the three version in the Open-3DSIM-v1.0.zip, to facilitate users to download as needed.
- The test_data.zip is the test dataset for the platform. For more samples, please download from Figshare: https://figshare.com/articles/dataset/Open_3DSIM_DATA/21731315.
- Each version contains a detailed user guide.
- We also provide a video to guide users to install the Fiji version (on the above Fishare link) in Install_Fiji_Screenshot.mp4. For any questions, please contact caoruijie@stu.pku.edu.cn or xipeng@pku.edu.cn.
Update on 2022.12.22. Here, we have updated the Fiji plugin 2022a version for users to select.
Update on 2022.12.25. Here, we thanks Dr Christophe Leterrier in Aix-Marseille Université for his data on N-SIM. We have made Open-3DSIM to be compatible to Nikon N-SIM system in version 1.1.