Tesseract Open Source OCR Engine (main repository)

Apache Arrow is a multi-language toolbox for accelerated data interchange and in-memory processing

RAxML Next Generation: faster, easier-to-use and more flexible

Genome annotation with AUGUSTUS

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

Redundans is a pipeline that assists an assembly of heterozygous/polymorphic genomes.

Efficient phylogenetic tree inference for massive taxonomic datasets

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

G-BLASTN is a GPU-accelerated nucleotide alignment tool based on the widely used NCBI-BLAST.

Correcting errors in noisy long reads using variation graphs

PECAT, a phased error correct and assembly tool

Linear-time de novo Long Read Assembler

PREQUAL: a pre-alignment quality filter for comparative sequence analyses

Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.

HyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurately as…

CrossHyLight is a strain aware de novo assembly method based on the overlap-layout-consensus (OLC) paradigm that leverages the strengths of NGS and 3rd generation sequencing to rapidly and accurate…