A versatile pairwise aligner for genomic and spliced nucleotide sequences

MMseqs2: ultra fast and sensitive search and clustering suite

Inference of ploidy and heterozygosity structure using whole genome sequencing data

software tools for haplotype assembly from sequence data

MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics

A statistical framework for ploidy estimation using NGS short-read data

Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye

Hapo-G is a tool that aims to improve the quality of genome assemblies by polishing the consensus with accurate reads.

A rapid phylogeny-based method for accurate community profiling of large-scale metabarcoding datasets

ELECTOR: EvaLuator of Error Correction Tools for lOng Reads