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Improvements to automation for generating EFO feedback #391

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apriltuesday opened this issue Jun 30, 2023 · 1 comment · Fixed by #430
Closed

Improvements to automation for generating EFO feedback #391

apriltuesday opened this issue Jun 30, 2023 · 1 comment · Fixed by #430

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@apriltuesday
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  • See if we can automatically check alternative ontologies (MONDO, OMIM, Orphanet) for definition and synonyms
    • Possibly include multiple options in different columns?
  • Check whether there are better ways of gathering cross-references
    • Sometimes manual text search is required to find identical terms in other ontologies, can we do this automatically?
  • Include NEW terms to the bottom of the terms for import table
    • Might need to add a column for category (new vs. import) and maybe some conditional formatting in the spreadsheet to color the cells differently
@apriltuesday
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apriltuesday commented Oct 10, 2023

From discussion with EFO - minutes here:

  • Import terms only need HP/MONDO ids, xrefs and other columns no longer needed
    • As long as we're doing curation in google sheets this is much easier done within the spreadsheet rather than via the export script
  • New terms need more detail and should go in a separate sheet
    • This should probably still happen via the export script, especially if we want to look up and prepare extra information

Also note the current script to prepare the import sheet doesn't even pick up the HP ids right now...

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