Do end to end testing of add new primary bundles

[justincc]

See https://docs.google.com/document/d/19CHvdfnzfJB8NtSnH007BNJBlJGXBeGm8wioCIDUg-c/edit#heading=h.xhiy2zjppg2l

Acceptance criteria

• Adding new primary bundles works through the UI
• There is an end to end integration test for adding new primary bundles

[justincc]

@aaclan-ebi Please let me know once you've run the manual test of adding bundles that refer to an existing in-project entity.

[aaclan-ebi]

Manual Testing:

Steps

Upload spreadsheet 1

spreadsheet 1: https://app.zenhub.com/files/132741306/e1858b3d-84ab-4810-b5e0-14aeeff38ca5/download

submission 1: https://ui.ingest.dev.data.humancellatlas.org/submissions/detail?uuid=b2b48821-b472-4f32-8c73-6da9455b18b6

Bundle 1: https://dss.dev.data.humancellatlas.org/v1/bundles/b01ba8a1-1d87-441f-9680-59fc6b806d41/?replica=aws&version2019-12-02T133903.019135Z

Upload spreadsheet 2

Specify linking by using uuids created from submission 1
spreadsheet 2: https://app.zenhub.com/files/132741306/2ab56331-166d-4234-86f6-175bc78f1307/download

submission 2: https://ui.ingest.dev.data.humancellatlas.org/submissions/detail?uuid=f28f1006-d631-4181-9826-0fddbda13fa8

Summary of linking done in second spreadsheet:

• New specimen is linked to existing donor, existing collection protocol
• New cell suspension is linked to new specimen using existing collection protocol
• Processes are linking to existing project and existing protocols
• Files are linked to existing seq protocol and existing lib prep protocol

Bundle 2: https://dss.dev.data.humancellatlas.org/v1/bundles/4b3cb87c-adcf-44d5-8c9f-3e095da1bc37/?replica=aws&version2019-12-02T134355.134159Z

Project view:
https://ui.ingest.dev.data.humancellatlas.org/projects/detail?uuid=095d25bb-1a67-4e3d-8539-9de5fdc978a1

Findings:

1. Links are done in Ingest successfully
2. New bundles was exported successfully.
3. While inspecting the new bundle's files, it seems that it contains existing entities with same uuid but newer version. Ticket filed for this: https://app.zenhub.com/workspaces/ingest-dev-5cfe1cb26482e537cf35e8d1/issues/humancellatlas/ingest-central/647

[aaclan-ebi]

Other findings/comments:

1. [Important] How do we link update submission to the project?

• This is related to https://app.zenhub.com/workspaces/ingest-dev-5cfe1cb26482e537cf35e8d1/issues/humancellatlas/ingest-central/640
• How do we link previous update submissions to the project?
• Currently, I think, it'll not be possible to update the project and link the submission to the project at the same time. Some checking is being done in the importer. Need to test this scenario.

2. It's VERY hard to view the linking of entities in Ingest before doing the export.
3. Need delete project functionality, in case the project is invalid.