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Build Docs

  1. Make sure you have Sphinx installed.
  2. Install the sctools package in advance following the instructions.
  3. From the current directory (/docs/), type:
make target

where target is one of {html, epub, latex, ...}. For more details about the sphinx builders, check here

Note that there are still some bugs to be worked out.

  • There are warnings about:
WARNING: [autosummary] failed to import 'sctools.metrics.CellMetrics': no module named sctools.metrics.CellMetrics
WARNING: [autosummary] failed to import 'sctools.metrics.GeneMetrics': no module named sctools.metrics.GeneMetrics
WARNING: [autosummary] failed to import 'sctools.metrics.MetricAggregatorBase': no module named sctools.metrics.MetricAggregatorBase
  • There are a bunch of warnings: WARNING: Unexpected section title.
  • There are a bunch of warnings: WARNING: toctree contains reference to nonexisting document

Most of the warnings can be solved by refactoring the docstrings and standardize the usages of autosummary later.