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Incorporate additional metrics into SS2 outputs #758

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kbergin opened this issue Aug 2, 2019 · 0 comments

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kbergin commented Aug 2, 2019 •

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Besides Picard metrics, we need to collect the following metrics

multiple mapping vs unique mapping reads
number of detected genes, number of high coverage genes

Note some of the metrics can be extracted from

aligner log files.
parse bam file tags.

AC:
Metrics are added to pipeline, and added to analysis.json outputs

┆Issue is synchronized with this Jira User Story

kbergin added the pipelines label

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