Analysis mouse SS2 dataset: Tabula Muris

[jychien]

There is a pipeline approved for Tabula Muris.

Project title: Tabula Muris: Transcriptomic characterization of 20 organs and tissues from Mus musculus at single cell resolution
Project short name: Tabula Muris
Project UUID: e0009214-c0a0-4a7b-96e2-d6a83e966ce0
Metadata: mouse, SS2
Bundles: 99840 primary bundles

Currently, there is an AUDR ticket detailing newline characters that need to be removed from certain metadata fields. This needs to be corrected before secondary analysis. collection_protocol.protocol_core.protocol_description: Hearts were dissected into four chambers (left and right atria, left and right ventricles) \n54 based on anatomical landmarks such as the atrial and ventricular canal and the septal groove.
https://github.com/HumanCellAtlas/hca-data-wrangling/issues/316

https://tracker.data.humancellatlas.org/?projectUUID=e0009214-c0a0-4a7b-96e2-d6a83e966ce0

@HumanCellAtlas/data-ops

[jychien]

Details for the resources needed for running this large of a dataset still needs to be ironed out. Related slack coversation.