• check_confounders.pdf: boxplot of potentially confounded variables across brain regions.
• DE_boxplots_byDx.pdf: significant gene case control boxplots.
• DE_boxplots_byRegion_clean.pdf: habenula vs other significant genes with cleaning effect boxplots.
• DE_boxplots_byRegion.pdf: habenula vs other significant genes boxplots.
• de_by_region_habenulaDown.pdf: boxplot with jitter by region for down expressed genes in region analysis.
• de_by_region_habenulaUp.pdf : boxplot with jitter by region for up expressed genes in region analysis.
• hist_pval_dx.pdf : distribution of pvalues by diagnosis.
• hist_pval_regions.pdf : distribution pvalues by region.
• PCA_plots_gene_Exprs_all_dx.pdf : pca scatter plot by diagnosis for all regions.
• PCA_plots_gene_Exprs_all_regions.pdf : pca scatter by regions.
• PCA_plots_gene_Exprs_control.pdf : pca scatter for only control brains.
• PCA_plots_gene_Exprs_dx.pdf : pca scatter for case control.
• variable_metrics_dx.pdf :boxplot of potentially confounded variables by diagnosis
• volcano_plot_all.pdf : needs fixing (corrupted file).
• volcano_plot_sig.pdf : volcano plot of sig genes in region analysis.
• voom_gene_dx.pdf : voom plot for model by diagnosis.
• voom_gene_region.pdf : vooom plot for model by region.