-
Notifications
You must be signed in to change notification settings - Fork 4
/
other_functions.html
116 lines (115 loc) · 3.16 KB
/
other_functions.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
<!DOCTYPE html>
<html>
<head>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1.0, user-scalable=yes">
<title>MotrpacBicQC: Other Functions</title>
<style type="text/css">
body {
font-family: sans-serif;
max-width: 800px;
margin: auto;
padding: 1em;
line-height: 1.5;
box-sizing: border-box;
}
body, .footnotes, code { font-size: .9em; }
li li { font-size: .95em; }
*, *:before, *:after {
box-sizing: inherit;
}
pre, img { max-width: 100%; }
pre, pre:hover {
white-space: pre-wrap;
word-break: break-all;
}
pre code {
display: block;
overflow-x: auto;
}
code { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono', 'Lucida Console', Consolas, Monaco, monospace; }
:not(pre) > code, code[class] { background-color: #F8F8F8; }
code.language-undefined, pre > code:not([class]) {
background-color: inherit;
border: 1px solid #eee;
}
table {
margin: auto;
border-top: 1px solid #666;
}
table thead th { border-bottom: 1px solid #ddd; }
th, td { padding: 5px; }
thead, tfoot, tr:nth-child(even) { background: #eee; }
blockquote {
color: #666;
margin: 0;
padding-left: 1em;
border-left: 0.5em solid #eee;
}
hr, .footnotes::before { border: 1px dashed #ddd; }
.frontmatter { text-align: center; }
#TOC .numbered li { list-style: none; }
#TOC .numbered { padding-left: 0; }
#TOC .numbered ul { padding-left: 1em; }
table, .body h2 { border-bottom: 1px solid #666; }
.body .appendix, .appendix ~ h2 { border-bottom-style: dashed; }
.footnote-ref a::before { content: "["; }
.footnote-ref a::after { content: "]"; }
section.footnotes::before {
content: "";
display: block;
max-width: 20em;
}
@media print {
body {
font-size: 12pt;
max-width: 100%;
}
tr, img { page-break-inside: avoid; }
}
@media only screen and (min-width: 992px) {
pre { white-space: pre; }
}
</style>
</head>
<body>
<div class="include-before">
</div>
<div class="frontmatter">
<div class="title"><h1>MotrpacBicQC: Other Functions</h1></div>
<div class="author"><h2></h2></div>
<div class="date"><h3>2024-01-04</h3></div>
</div>
<div class="body">
<h2 id="data-objects">Data Objects</h2>
<p>The following data objects are available</p>
<p><strong>Colors and Abbreviations</strong></p>
<ul>
<li><code>assay_abbr</code>: assay abbreviations</li>
<li><code>assay_order</code>: assay order</li>
<li><code>group_abbr</code>: group abbreviations</li>
<li><code>group_cols</code>: group colors</li>
<li><code>sex_abbr</code>: sex abbreviations</li>
<li><code>sex_cols</code>: sex colors</li>
<li><code>tissue_abbr</code>: tissue abbreviations</li>
<li><code>tissue_cols</code>: tissue colors</li>
<li><code>tissue_order</code>: tissue order</li>
</ul>
<p><sup>Data objects generated by Nicole Gay (@nicolerg)</sup></p>
<p><strong>Animal tissue codes</strong></p>
<ul>
<li><code>bic_animal_tissue_code</code></li>
<li><code>assay_codes</code></li>
</ul>
<p><strong>Phenotypes PASS1A</strong></p>
<ul>
<li><code>phenotypes_pass1a06_short</code></li>
</ul>
<h2 id="help">Help</h2>
<p>Need extra help? Please, <a href="https://github.com/MoTrPAC/MotrpacBicQC/issues">submit an issue here</a>
providing as many details as possible.</p>
</div>
<div class="include-after">
</div>
</body>
</html>