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IMMUNO_META.Rd
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IMMUNO_META.Rd
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% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/data.R
\docType{data}
\name{IMMUNO_META}
\alias{IMMUNO_META}
\title{Multiplexed immunoassay metadata and QC}
\format{
A data frame with 1511 rows and 23 variables:
\describe{
\item{\code{viallabel}}{character, sample identifier}
\item{\code{tissue}}{character, tissue abbreviation, one of \link{TISSUE_ABBREV}}
\item{\code{tissue_code}}{character, tissue code used in data release. See \link[MotrpacBicQC:bic_animal_tissue_code]{MotrpacBicQC::bic_animal_tissue_code}.}
\item{\code{bid}}{integer, biospecimen ID}
\item{\code{luminex_sample_name}}{character, sample name used by HIMC in raw data files}
\item{\code{panel_name}}{character, LUMINEX panel name}
\item{\code{plate_id}}{character, plate ID in format "\verb{[date]-[tissues]_[panel_name]}"}
\item{\code{ppt_type}}{character, species}
\item{\code{weight_mg}}{integer, sample weight in mg (solid tissue only)}
\item{\code{volume_ul}}{integer, sample volume in uL (plasma only)}
\item{\code{date_extracted}}{character, date of protein extraction}
\item{\code{operators}}{character, initials of experimentalists}
\item{\code{protein_conc_mg_ml}}{double, protein concentration in mg/mL}
\item{\code{vol_plate1_ul}}{integer, volume (uL) of sample submitted in first master plate (plate used for LUMINEX assays)}
\item{\code{min_vol_plate2_ul}}{integer, volume (uL) of remaining sample submitted in second master plate (backup plate)}
\item{\code{comments}}{character, comments about protein extraction}
\item{\code{sample_well_position}}{character, well position in plates submitted to the HIMC}
\item{\code{luminex_well}}{character, well position for LUMINEX assay}
\item{\code{sex}}{character, one of 'male' or 'female'}
\item{\code{group}}{character, intervention group, one of "1w", "2w", "4w", "8w", "control"}
\item{\code{log2_CHEX1}}{double, custom Assay CHEX control beads to monitor instrument performance, log-transformed}
\item{\code{log2_CHEX2}}{double, custom Assay CHEX control beads to monitor application of the detection antibody, log-transformed}
\item{\code{log2_CHEX3}}{double, custom Assay CHEX control beads to monitor application of the fluorescent reporter, log-transformed}
\item{\code{log2_CHEX4}}{double, custom Assay CHEX control beads to monitor nonspecific binding, log-transformed}
}
}
\usage{
IMMUNO_META
}
\description{
Multiplexed immunoassay (IMMUNO) experimental and quantification QC metrics
}
\details{
Protein extractions from the same sample/vial label were used for multiple
panels, so metadata must be matched to unique samples using both \code{viallabel} and \code{panel_name}.
}
\keyword{datasets}