diff --git a/covizu/utils/gisaid_utils.py b/covizu/utils/gisaid_utils.py index b7700cc..119047e 100644 --- a/covizu/utils/gisaid_utils.py +++ b/covizu/utils/gisaid_utils.py @@ -332,8 +332,9 @@ def convert_json(infile, provision): md = metadata.get(accn, None) if md is None: print("Failed to retrieve metadata for accession {}".format(accn)) - sys.exit() - revised.append([name, accn, location, coldate, md['gender'], md['age'], md['status']]) + revised.append([name, accn, location, coldate, 'N/A', 'N/A', 'N/A']) + else: + revised.append([name, accn, location, coldate, md['gender'], md['age'], md['status']]) # replace list of samples cluster['nodes'][variant] = revised