Clustering Pipelines/glmm.ipynb

{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n"
     ]
    }
   ],
   "source": [
    "import pandas as pd\n",
    "import os\n",
    "import glob\n",
    "from scipy.signal import find_peaks\n",
    "import matplotlib.pyplot as plt\n",
    "from sklearn.cluster import KMeans\n",
    "import numpy as np\n",
    "from skfda.representation.grid import FDataGrid\n",
    "import fdasrsf as fs\n",
    "\n",
    "\n",
    "import skfda\n",
    "from skfda.datasets import fetch_growth\n",
    "from skfda.exploratory.visualization import FPCAPlot\n",
    "from skfda.preprocessing.dim_reduction import FPCA\n",
    "from skfda.representation.basis import (\n",
    "    BSplineBasis,\n",
    "    FourierBasis,\n",
    "    MonomialBasis,\n",
    ")\n",
    "\n",
    "\n",
    "from __future__ import annotations\n",
    "\n",
    "from typing import Any, Mapping, Tuple\n",
    "\n",
    "import cartopy.crs as ccrs\n",
    "import matplotlib.pyplot as plt\n",
    "import numpy as np\n",
    "import sklearn.cluster\n",
    "from cartopy.io.img_tiles import GoogleTiles\n",
    "from matplotlib.axes import Axes\n",
    "from matplotlib.figure import Figure\n",
    "\n",
    "from skfda.datasets import fetch_aemet\n",
    "from skfda.exploratory.depth import ModifiedBandDepth\n",
    "from skfda.exploratory.visualization import Boxplot, MagnitudeShapePlot\n",
    "from skfda.exploratory.visualization.fpca import FPCAPlot\n",
    "from skfda.misc.metrics import l2_distance\n",
    "from skfda.ml.clustering import KMeans\n",
    "from skfda.preprocessing.dim_reduction import FPCA\n",
    "\n",
    "from sklearn.cluster import DBSCAN\n",
    "from sklearn.neighbors import NearestNeighbors\n",
    "from mpl_toolkits.mplot3d import Axes3D\n",
    "import numpy as np\n",
    "import matplotlib.pyplot as plt\n",
    "from kneed import KneeLocator\n",
    "\n",
    "\n",
    "from sklearn.datasets import fetch_openml\n",
    "from collections import Counter\n",
    "import pandas as pd\n",
    "import numpy as np\n",
    "from sklearn.preprocessing import OneHotEncoder\n",
    "from sklearn.model_selection import train_test_split\n",
    "from imblearn.under_sampling import CondensedNearestNeighbour, TomekLinks\n",
    "from sklearn.metrics import precision_recall_curve, auc, roc_auc_score\n",
    "from sklearn.preprocessing import StandardScaler\n",
    "from sklearn.linear_model import LogisticRegression\n",
    "from sklearn.model_selection import StratifiedKFold\n",
    "from imblearn.over_sampling import SMOTE\n",
    "from IPython.display import Image"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Data Cleaning and Time Warping"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {},
   "outputs": [],
   "source": [
    "#read each csv file in current_directory and store it in dataframes\n",
    "\n",
    "current_directory = os.getcwd()\n",
    "csv_files = glob.glob(os.path.join(current_directory, 'ABR_exported_files/*.csv'))\n",
    "\n",
    "dataframes = {}\n",
    "for file in csv_files:\n",
    "    filename = os.path.splitext(os.path.basename(file))[0]\n",
    "    if pd.read_csv(file).shape[1] > 1:\n",
    "        dataframes[filename] = pd.read_csv(file)\n",
    "    else:\n",
    "        dataframes[filename] = pd.read_csv(file, skiprows=2)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {},
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Initializing...\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/pandas/core/arrays/masked.py:60: UserWarning: Pandas requires version '1.3.6' or newer of 'bottleneck' (version '1.3.5' currently installed).\n",
      "  from pandas.core import (\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Compute Karcher Mean of 8 function in SRSF space with lam=0\n",
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      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 14 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 13 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "Compute Karcher Mean of 12 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 13 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 11 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
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      "Compute Karcher Mean of 13 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/ipykernel_11530/2423822563.py:49: FutureWarning: The behavior of DataFrame concatenation with empty or all-NA entries is deprecated. In a future version, this will no longer exclude empty or all-NA columns when determining the result dtypes. To retain the old behavior, exclude the relevant entries before the concat operation.\n",
      "  results_df = pd.concat([results_df, new_row], ignore_index=True)\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "Compute Karcher Mean of 14 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 14 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 6 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 6 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 9 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 8 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 8 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 9 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 12 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 12 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 3 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 7 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
      "updating step: r=2\n",
      "updating step: r=3\n",
      "updating step: r=4\n",
      "updating step: r=5\n",
      "updating step: r=6\n",
      "updating step: r=7\n",
      "updating step: r=8\n",
      "updating step: r=9\n",
      "updating step: r=10\n",
      "updating step: r=11\n",
      "updating step: r=12\n",
      "updating step: r=13\n",
      "updating step: r=14\n",
      "updating step: r=15\n",
      "updating step: r=16\n",
      "updating step: r=17\n",
      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 10 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 6 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "updating step: r=18\n",
      "updating step: r=19\n",
      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 13 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "updating step: r=20\n",
      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/utility_functions.py:168: RuntimeWarning: invalid value encountered in divide\n",
      "  gam = orN2.coptimum_reparam(ascontiguousarray(q1), time,\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/time_warping.py:210: RuntimeWarning: invalid value encountered in divide\n",
      "  vtil[:,k] = v/d\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/time_warping.py:211: RuntimeWarning: divide by zero encountered in scalar divide\n",
      "  dtil[k] = 1.0/d\n",
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/fdasrsf/time_warping.py:230: RuntimeWarning: divide by zero encountered in scalar divide\n",
      "  qun[r] = norm(mq[:, r + 1] - mq[:, r]) / norm(mq[:, r])\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "updating step: r=2\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n",
      "Initializing...\n",
      "Compute Karcher Mean of 15 function in SRSF space with lam=0\n",
      "updating step: r=1\n",
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      "maximal number of iterations is reached\n"
     ]
    }
   ],
   "source": [
    "subjects = [0,1,2,3,4,5,6,7,8,9,10]\n",
    "frequencies = [4000, 8000, 16000, 24000, 32000]\n",
    "dB_levels = [20,25,30,35,40,45,50,55,60,65,70,75,80,85,90]\n",
    "results_df = pd.DataFrame()\n",
    "\n",
    "# Iterate over all subject-frequency pairs\n",
    "for subject in subjects:\n",
    "    for frequency in frequencies:\n",
    "        waves = []\n",
    "        available_dB_levels = []  # List to store the available dB levels for this subject/frequency pairing\n",
    "        for dB in dB_levels:\n",
    "            filename = list(dataframes.items())[subject][0]\n",
    "            df = list(dataframes.values())[subject]\n",
    "            khz = df[df['Freq(Hz)'] == frequency]\n",
    "            dbkhz = khz[khz['Level(dB)'] == dB]  # Select the dB level\n",
    "            if not dbkhz.empty:\n",
    "                index = dbkhz.index.values[0]\n",
    "                final = df.iloc[index,48:]\n",
    "                final = pd.to_numeric(final, errors='coerce')\n",
    "                wave = final.tolist()[:-1]\n",
    "                waves.append(wave)\n",
    "                available_dB_levels.append(dB)  # Add the dB level to the list of available dB levels\n",
    "\n",
    "        # Align the waves using dynamic time warping\n",
    "        np_waves = np.array(waves)\n",
    "        time = np.linspace(0, 1, np_waves.shape[1])\n",
    "        obj = fs.fdawarp(np_waves.T, time)\n",
    "        obj.srsf_align(parallel=True)\n",
    "        aligned_waves = obj.fn.T\n",
    "\n",
    "        # Iterate over all available dB levels to find the peaks in the aligned waves\n",
    "        for i, dB in enumerate(available_dB_levels):\n",
    "            wave = aligned_waves[i]\n",
    "            wave_after_30 = wave[50:-30]  # start from the 30th point and end before the last 30 points\n",
    "            peaks, _ = find_peaks(wave_after_30, distance=15)\n",
    "            peaks = [peak + 50 for peak in peaks]  # adjust the indices\n",
    "            highest_peaks_indices = sorted(peaks, key=lambda x: wave[x], reverse=True)[:5]\n",
    "            highest_peaks_indices.sort()\n",
    "            peak_coordinates = []\n",
    "            for peak in highest_peaks_indices:\n",
    "                peak_coordinates.extend([peak, wave[peak]])\n",
    "\n",
    "            # If fewer than 5 peaks, fill the remaining coordinates with None\n",
    "            while len(peak_coordinates) < 10:\n",
    "                peak_coordinates.extend([None, None])\n",
    "\n",
    "            # Add the results to the dataframe\n",
    "            new_row = pd.DataFrame([{'Subject': filename, 'Frequency': frequency, 'dB': dB, 'Peak1_X': peak_coordinates[0], 'Peak1_Y': peak_coordinates[1], 'Peak2_X': peak_coordinates[2], 'Peak2_Y': peak_coordinates[3], 'Peak3_X': peak_coordinates[4], 'Peak3_Y': peak_coordinates[5], 'Peak4_X': peak_coordinates[6], 'Peak4_Y': peak_coordinates[7], 'Peak5_X': peak_coordinates[8], 'Peak5_Y': peak_coordinates[9]}])\n",
    "            results_df = pd.concat([results_df, new_row], ignore_index=True)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {},
   "outputs": [],
   "source": [
    "# remove rows with NA\n",
    "results_df = results_df[~results_df['Subject'].str.startswith('A')]\n",
    "\n",
    "#add deaf column\n",
    "def check_subject(subject):\n",
    "    if subject.startswith(('B1_1285', 'B2_1291', 'B2_1290')):\n",
    "        return 1\n",
    "    else:\n",
    "        return 0\n",
    "\n",
    "results_df['Deaf'] = results_df['Subject'].apply(check_subject)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {},
   "outputs": [
    {
     "data": {
      "text/html": [
       "<div>\n",
       "<style scoped>\n",
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       "        vertical-align: middle;\n",
       "    }\n",
       "\n",
       "    .dataframe tbody tr th {\n",
       "        vertical-align: top;\n",
       "    }\n",
       "\n",
       "    .dataframe thead th {\n",
       "        text-align: right;\n",
       "    }\n",
       "</style>\n",
       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Subject</th>\n",
       "      <th>Frequency</th>\n",
       "      <th>dB</th>\n",
       "      <th>Peak1_X</th>\n",
       "      <th>Peak1_Y</th>\n",
       "      <th>Peak2_X</th>\n",
       "      <th>Peak2_Y</th>\n",
       "      <th>Peak3_X</th>\n",
       "      <th>Peak3_Y</th>\n",
       "      <th>Peak4_X</th>\n",
       "      <th>Peak4_Y</th>\n",
       "      <th>Peak5_X</th>\n",
       "      <th>Peak5_Y</th>\n",
       "      <th>Deaf</th>\n",
       "    </tr>\n",
       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>55</td>\n",
       "      <td>81</td>\n",
       "      <td>0.001650</td>\n",
       "      <td>112</td>\n",
       "      <td>0.001422</td>\n",
       "      <td>136</td>\n",
       "      <td>0.001335</td>\n",
       "      <td>152</td>\n",
       "      <td>-0.000050</td>\n",
       "      <td>180</td>\n",
       "      <td>0.001415</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>60</td>\n",
       "      <td>66</td>\n",
       "      <td>-0.002112</td>\n",
       "      <td>81</td>\n",
       "      <td>0.002746</td>\n",
       "      <td>112</td>\n",
       "      <td>-0.000114</td>\n",
       "      <td>136</td>\n",
       "      <td>0.003893</td>\n",
       "      <td>191</td>\n",
       "      <td>0.003407</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>65</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007780</td>\n",
       "      <td>112</td>\n",
       "      <td>-0.001040</td>\n",
       "      <td>136</td>\n",
       "      <td>0.003537</td>\n",
       "      <td>151</td>\n",
       "      <td>0.000362</td>\n",
       "      <td>191</td>\n",
       "      <td>0.000339</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>70</td>\n",
       "      <td>81</td>\n",
       "      <td>0.004333</td>\n",
       "      <td>135</td>\n",
       "      <td>0.002188</td>\n",
       "      <td>151</td>\n",
       "      <td>0.002845</td>\n",
       "      <td>191</td>\n",
       "      <td>0.002547</td>\n",
       "      <td>211</td>\n",
       "      <td>0.001529</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>75</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007113</td>\n",
       "      <td>112</td>\n",
       "      <td>0.002525</td>\n",
       "      <td>136</td>\n",
       "      <td>0.006475</td>\n",
       "      <td>151</td>\n",
       "      <td>0.005110</td>\n",
       "      <td>191</td>\n",
       "      <td>0.009667</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>505</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>32000</td>\n",
       "      <td>70</td>\n",
       "      <td>79</td>\n",
       "      <td>0.009000</td>\n",
       "      <td>100</td>\n",
       "      <td>0.006000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.019526</td>\n",
       "      <td>169</td>\n",
       "      <td>0.008000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.010877</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>506</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>32000</td>\n",
       "      <td>75</td>\n",
       "      <td>79</td>\n",
       "      <td>0.008000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.027383</td>\n",
       "      <td>139</td>\n",
       "      <td>0.007000</td>\n",
       "      <td>169</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.011000</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>507</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>32000</td>\n",
       "      <td>80</td>\n",
       "      <td>79</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.030194</td>\n",
       "      <td>139</td>\n",
       "      <td>0.009000</td>\n",
       "      <td>169</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>200</td>\n",
       "      <td>0.006000</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>508</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>32000</td>\n",
       "      <td>85</td>\n",
       "      <td>58</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>79</td>\n",
       "      <td>0.010292</td>\n",
       "      <td>117</td>\n",
       "      <td>0.031957</td>\n",
       "      <td>169</td>\n",
       "      <td>0.015000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.016877</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>509</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>32000</td>\n",
       "      <td>90</td>\n",
       "      <td>58</td>\n",
       "      <td>0.011000</td>\n",
       "      <td>79</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>118</td>\n",
       "      <td>0.044782</td>\n",
       "      <td>169</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>202</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>449 rows × 14 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "              Subject  Frequency  dB Peak1_X   Peak1_Y Peak2_X   Peak2_Y  \\\n",
       "0    B1_1282_baseline       4000  55      81  0.001650     112  0.001422   \n",
       "1    B1_1282_baseline       4000  60      66 -0.002112      81  0.002746   \n",
       "2    B1_1282_baseline       4000  65      81  0.007780     112 -0.001040   \n",
       "3    B1_1282_baseline       4000  70      81  0.004333     135  0.002188   \n",
       "4    B1_1282_baseline       4000  75      81  0.007113     112  0.002525   \n",
       "..                ...        ...  ..     ...       ...     ...       ...   \n",
       "505  B2_1292_baseline      32000  70      79  0.009000     100  0.006000   \n",
       "506  B2_1292_baseline      32000  75      79  0.008000     117  0.027383   \n",
       "507  B2_1292_baseline      32000  80      79  0.013000     117  0.030194   \n",
       "508  B2_1292_baseline      32000  85      58  0.013000      79  0.010292   \n",
       "509  B2_1292_baseline      32000  90      58  0.011000      79  0.010000   \n",
       "\n",
       "    Peak3_X   Peak3_Y Peak4_X   Peak4_Y Peak5_X   Peak5_Y  Deaf  \n",
       "0       136  0.001335     152 -0.000050     180  0.001415     0  \n",
       "1       112 -0.000114     136  0.003893     191  0.003407     0  \n",
       "2       136  0.003537     151  0.000362     191  0.000339     0  \n",
       "3       151  0.002845     191  0.002547     211  0.001529     0  \n",
       "4       136  0.006475     151  0.005110     191  0.009667     0  \n",
       "..      ...       ...     ...       ...     ...       ...   ...  \n",
       "505     117  0.019526     169  0.008000     201  0.010877     0  \n",
       "506     139  0.007000     169  0.010000     201  0.011000     0  \n",
       "507     139  0.009000     169  0.013000     200  0.006000     0  \n",
       "508     117  0.031957     169  0.015000     201  0.016877     0  \n",
       "509     118  0.044782     169  0.010000     202  0.013000     0  \n",
       "\n",
       "[449 rows x 14 columns]"
      ]
     },
     "execution_count": 5,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "results_df"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "<table border=\"1\" class=\"dataframe\">\n",
       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Subject</th>\n",
       "      <th>Frequency</th>\n",
       "      <th>dB</th>\n",
       "      <th>Peak1_X</th>\n",
       "      <th>Peak1_Y</th>\n",
       "      <th>Peak2_X</th>\n",
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       "      <th>Peak5_X</th>\n",
       "      <th>Peak5_Y</th>\n",
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       "      <th>Signal</th>\n",
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       "      <td>B1_1282_baseline</td>\n",
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       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>60</td>\n",
       "      <td>66</td>\n",
       "      <td>-0.002112</td>\n",
       "      <td>81</td>\n",
       "      <td>0.002746</td>\n",
       "      <td>112</td>\n",
       "      <td>-0.000114</td>\n",
       "      <td>136</td>\n",
       "      <td>0.003893</td>\n",
       "      <td>191</td>\n",
       "      <td>0.003407</td>\n",
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       "      <td>0</td>\n",
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       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>65</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007780</td>\n",
       "      <td>112</td>\n",
       "      <td>-0.001040</td>\n",
       "      <td>136</td>\n",
       "      <td>0.003537</td>\n",
       "      <td>151</td>\n",
       "      <td>0.000362</td>\n",
       "      <td>191</td>\n",
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       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>70</td>\n",
       "      <td>81</td>\n",
       "      <td>0.004333</td>\n",
       "      <td>135</td>\n",
       "      <td>0.002188</td>\n",
       "      <td>151</td>\n",
       "      <td>0.002845</td>\n",
       "      <td>191</td>\n",
       "      <td>0.002547</td>\n",
       "      <td>211</td>\n",
       "      <td>0.001529</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>4000</td>\n",
       "      <td>75</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007113</td>\n",
       "      <td>112</td>\n",
       "      <td>0.002525</td>\n",
       "      <td>136</td>\n",
       "      <td>0.006475</td>\n",
       "      <td>151</td>\n",
       "      <td>0.005110</td>\n",
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      "text/plain": [
       "            Subject  Frequency  dB Peak1_X   Peak1_Y Peak2_X   Peak2_Y  \\\n",
       "0  B1_1282_baseline       4000  55      81  0.001650     112  0.001422   \n",
       "1  B1_1282_baseline       4000  60      66 -0.002112      81  0.002746   \n",
       "2  B1_1282_baseline       4000  65      81  0.007780     112 -0.001040   \n",
       "3  B1_1282_baseline       4000  70      81  0.004333     135  0.002188   \n",
       "4  B1_1282_baseline       4000  75      81  0.007113     112  0.002525   \n",
       "\n",
       "  Peak3_X   Peak3_Y Peak4_X   Peak4_Y Peak5_X   Peak5_Y  Deaf  Signal  \n",
       "0     136  0.001335     152 -0.000050     180  0.001415     0       0  \n",
       "1     112 -0.000114     136  0.003893     191  0.003407     0       0  \n",
       "2     136  0.003537     151  0.000362     191  0.000339     0       0  \n",
       "3     151  0.002845     191  0.002547     211  0.001529     0       0  \n",
       "4     136  0.006475     151  0.005110     191  0.009667     0       1  "
      ]
     },
     "execution_count": 6,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "# Define the dB thresholds for each subject and frequency\n",
    "thresholds = {\n",
    "    'B1': {\n",
    "        4000: {'1284': 70, '1285': 90, '1286': 80, '1287': 70, '1279': 70, '1280': 80, '1281': 90, '1282': 75},\n",
    "        8000: {'1284': 45, '1285': 70, '1286': 50, '1287': 30, '1279': 30, '1280': 50, '1281': 65, '1282': 50},\n",
    "        16000: {'1284': 45, '1285': 60, '1286': 35, '1287': 20, '1279': 25, '1280': 35, '1281': 50, '1282': 35},\n",
    "        24000: {'1284': 45, '1285': 65, '1286': 40, '1287': 35, '1279': 35, '1280': 40, '1281': 55, '1282': 40},\n",
    "        32000: {'1284': 50, '1285': 60, '1286': 35, '1287': 30, '1279': 35, '1280': 35, '1281': 70, '1282': 45}\n",
    "    },\n",
    "    'B2': {\n",
    "        4000: {'1283': 70, '1291': 90, '1292': 80, '1290': 80, '1288': 60, '1289': 80},\n",
    "        8000: {'1283': 30, '1291': 85, '1292': 60, '1290': 75, '1288': 45, '1289': 40},\n",
    "        16000: {'1283': 20, '1291': 60, '1292': 40, '1290': 60, '1288': 30, '1289': 25},\n",
    "        24000: {'1283': 35, '1291': 65, '1292': 40, '1290': 70, '1288': 35, '1289': 35},\n",
    "        32000: {'1283': 35, '1291': 75, '1292': 35, '1290': 90, '1288': 50, '1289': 35}\n",
    "    }\n",
    "}\n",
    "\n",
    "# Add the 'signal' column\n",
    "def check_signal(row):\n",
    "    group = row['Subject'].split('_')[0]\n",
    "    subject = row['Subject'].split('_')[1]\n",
    "    frequency = row['Frequency']\n",
    "    dB = row['dB']\n",
    "    \n",
    "    # Check if any of the values are nan\n",
    "    if pd.isnull(group) or pd.isnull(subject) or pd.isnull(frequency) or pd.isnull(dB):\n",
    "        return np.nan  # or return some other value that makes sense in your context\n",
    "    \n",
    "    if dB >= thresholds[group][frequency][subject]:\n",
    "        return 1\n",
    "    else:\n",
    "        return 0\n",
    "\n",
    "\n",
    "results_df['Signal'] = results_df.apply(check_signal, axis=1)\n",
    "\n",
    "results_df.head()\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {},
   "outputs": [],
   "source": [
    "encoded = pd.get_dummies(results_df, columns=['Frequency'])\n",
    "from sklearn.preprocessing import OrdinalEncoder\n",
    "encoder = OrdinalEncoder()\n",
    "encoded['dB_encoded'] = encoder.fit_transform(encoded[['dB']])\n",
    "encoded = encoded.drop('dB', axis=1)\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {},
   "outputs": [
    {
     "data": {
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       "  <thead>\n",
       "    <tr style=\"text-align: right;\">\n",
       "      <th></th>\n",
       "      <th>Subject</th>\n",
       "      <th>Peak1_X</th>\n",
       "      <th>Peak1_Y</th>\n",
       "      <th>Peak2_X</th>\n",
       "      <th>Peak2_Y</th>\n",
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       "      <th>Peak5_X</th>\n",
       "      <th>Peak5_Y</th>\n",
       "      <th>Deaf</th>\n",
       "      <th>Signal</th>\n",
       "      <th>Frequency_4000</th>\n",
       "      <th>Frequency_8000</th>\n",
       "      <th>Frequency_16000</th>\n",
       "      <th>Frequency_24000</th>\n",
       "      <th>Frequency_32000</th>\n",
       "      <th>dB_encoded</th>\n",
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       "  </thead>\n",
       "  <tbody>\n",
       "    <tr>\n",
       "      <th>0</th>\n",
       "      <td>B1_1282_baseline</td>\n",
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       "      <td>False</td>\n",
       "      <td>False</td>\n",
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       "    </tr>\n",
       "    <tr>\n",
       "      <th>1</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>66</td>\n",
       "      <td>-0.002112</td>\n",
       "      <td>81</td>\n",
       "      <td>0.002746</td>\n",
       "      <td>112</td>\n",
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       "      <td>0.003407</td>\n",
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       "      <td>True</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>8.0</td>\n",
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       "    <tr>\n",
       "      <th>2</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007780</td>\n",
       "      <td>112</td>\n",
       "      <td>-0.001040</td>\n",
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       "      <td>0.003537</td>\n",
       "      <td>151</td>\n",
       "      <td>0.000362</td>\n",
       "      <td>191</td>\n",
       "      <td>0.000339</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>True</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>9.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>3</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>81</td>\n",
       "      <td>0.004333</td>\n",
       "      <td>135</td>\n",
       "      <td>0.002188</td>\n",
       "      <td>151</td>\n",
       "      <td>0.002845</td>\n",
       "      <td>191</td>\n",
       "      <td>0.002547</td>\n",
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       "      <td>0.001529</td>\n",
       "      <td>0</td>\n",
       "      <td>0</td>\n",
       "      <td>True</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>10.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>4</th>\n",
       "      <td>B1_1282_baseline</td>\n",
       "      <td>81</td>\n",
       "      <td>0.007113</td>\n",
       "      <td>112</td>\n",
       "      <td>0.002525</td>\n",
       "      <td>136</td>\n",
       "      <td>0.006475</td>\n",
       "      <td>151</td>\n",
       "      <td>0.005110</td>\n",
       "      <td>191</td>\n",
       "      <td>0.009667</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>True</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>11.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>...</th>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "      <td>...</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>505</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>79</td>\n",
       "      <td>0.009000</td>\n",
       "      <td>100</td>\n",
       "      <td>0.006000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.019526</td>\n",
       "      <td>169</td>\n",
       "      <td>0.008000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.010877</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>True</td>\n",
       "      <td>10.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>506</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>79</td>\n",
       "      <td>0.008000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.027383</td>\n",
       "      <td>139</td>\n",
       "      <td>0.007000</td>\n",
       "      <td>169</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.011000</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>True</td>\n",
       "      <td>11.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>507</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>79</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>117</td>\n",
       "      <td>0.030194</td>\n",
       "      <td>139</td>\n",
       "      <td>0.009000</td>\n",
       "      <td>169</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>200</td>\n",
       "      <td>0.006000</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>True</td>\n",
       "      <td>12.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>508</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>58</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>79</td>\n",
       "      <td>0.010292</td>\n",
       "      <td>117</td>\n",
       "      <td>0.031957</td>\n",
       "      <td>169</td>\n",
       "      <td>0.015000</td>\n",
       "      <td>201</td>\n",
       "      <td>0.016877</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>True</td>\n",
       "      <td>13.0</td>\n",
       "    </tr>\n",
       "    <tr>\n",
       "      <th>509</th>\n",
       "      <td>B2_1292_baseline</td>\n",
       "      <td>58</td>\n",
       "      <td>0.011000</td>\n",
       "      <td>79</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>118</td>\n",
       "      <td>0.044782</td>\n",
       "      <td>169</td>\n",
       "      <td>0.010000</td>\n",
       "      <td>202</td>\n",
       "      <td>0.013000</td>\n",
       "      <td>0</td>\n",
       "      <td>1</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>False</td>\n",
       "      <td>True</td>\n",
       "      <td>14.0</td>\n",
       "    </tr>\n",
       "  </tbody>\n",
       "</table>\n",
       "<p>449 rows × 19 columns</p>\n",
       "</div>"
      ],
      "text/plain": [
       "              Subject Peak1_X   Peak1_Y Peak2_X   Peak2_Y Peak3_X   Peak3_Y  \\\n",
       "0    B1_1282_baseline      81  0.001650     112  0.001422     136  0.001335   \n",
       "1    B1_1282_baseline      66 -0.002112      81  0.002746     112 -0.000114   \n",
       "2    B1_1282_baseline      81  0.007780     112 -0.001040     136  0.003537   \n",
       "3    B1_1282_baseline      81  0.004333     135  0.002188     151  0.002845   \n",
       "4    B1_1282_baseline      81  0.007113     112  0.002525     136  0.006475   \n",
       "..                ...     ...       ...     ...       ...     ...       ...   \n",
       "505  B2_1292_baseline      79  0.009000     100  0.006000     117  0.019526   \n",
       "506  B2_1292_baseline      79  0.008000     117  0.027383     139  0.007000   \n",
       "507  B2_1292_baseline      79  0.013000     117  0.030194     139  0.009000   \n",
       "508  B2_1292_baseline      58  0.013000      79  0.010292     117  0.031957   \n",
       "509  B2_1292_baseline      58  0.011000      79  0.010000     118  0.044782   \n",
       "\n",
       "    Peak4_X   Peak4_Y Peak5_X   Peak5_Y  Deaf  Signal  Frequency_4000  \\\n",
       "0       152 -0.000050     180  0.001415     0       0            True   \n",
       "1       136  0.003893     191  0.003407     0       0            True   \n",
       "2       151  0.000362     191  0.000339     0       0            True   \n",
       "3       191  0.002547     211  0.001529     0       0            True   \n",
       "4       151  0.005110     191  0.009667     0       1            True   \n",
       "..      ...       ...     ...       ...   ...     ...             ...   \n",
       "505     169  0.008000     201  0.010877     0       1           False   \n",
       "506     169  0.010000     201  0.011000     0       1           False   \n",
       "507     169  0.013000     200  0.006000     0       1           False   \n",
       "508     169  0.015000     201  0.016877     0       1           False   \n",
       "509     169  0.010000     202  0.013000     0       1           False   \n",
       "\n",
       "     Frequency_8000  Frequency_16000  Frequency_24000  Frequency_32000  \\\n",
       "0             False            False            False            False   \n",
       "1             False            False            False            False   \n",
       "2             False            False            False            False   \n",
       "3             False            False            False            False   \n",
       "4             False            False            False            False   \n",
       "..              ...              ...              ...              ...   \n",
       "505           False            False            False             True   \n",
       "506           False            False            False             True   \n",
       "507           False            False            False             True   \n",
       "508           False            False            False             True   \n",
       "509           False            False            False             True   \n",
       "\n",
       "     dB_encoded  \n",
       "0           7.0  \n",
       "1           8.0  \n",
       "2           9.0  \n",
       "3          10.0  \n",
       "4          11.0  \n",
       "..          ...  \n",
       "505        10.0  \n",
       "506        11.0  \n",
       "507        12.0  \n",
       "508        13.0  \n",
       "509        14.0  \n",
       "\n",
       "[449 rows x 19 columns]"
      ]
     },
     "execution_count": 8,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "encoded"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# Train/Test Split"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {},
   "outputs": [],
   "source": [
    "#train/test split\n",
    "from sklearn.model_selection import train_test_split\n",
    "encoded = encoded.dropna()\n",
    "\n",
    "feature_cols = [col for col in encoded.columns if col not in ['Signal']]\n",
    "X = encoded[feature_cols]\n",
    "y = encoded['Signal']\n",
    "x_train, x_test, y_train, y_test = train_test_split(X, y, test_size=0.2, random_state=13)\n"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# R Wrapper Setup"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "/opt/homebrew/anaconda3/lib/python3.11/site-packages/rpy2/robjects/lib/ggplot2.py:70: UserWarning: This was designed against ggplot2 versions starting with 3.3. but you have 3.4.4\n",
      "  warnings.warn(\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "--- Please select a CRAN mirror for use in this session ---\n",
      "Secure CRAN mirrors \n",
      "\n",
      " 1: 0-Cloud [https]\n",
      " 2: Australia (Canberra) [https]\n",
      " 3: Australia (Melbourne 1) [https]\n",
      " 4: Australia (Melbourne 2) [https]\n",
      " 5: Austria [https]\n",
      " 6: Belgium (Brussels) [https]\n",
      " 7: Brazil (PR) [https]\n",
      " 8: Brazil (RJ) [https]\n",
      " 9: Brazil (SP 1) [https]\n",
      "10: Brazil (SP 2) [https]\n",
      "11: Bulgaria [https]\n",
      "12: Canada (MB) [https]\n",
      "13: Canada (ON) [https]\n",
      "14: Chile (Santiago) [https]\n",
      "15: China (Beijing 2) [https]\n",
      "16: China (Beijing 3) [https]\n",
      "17: China (Hefei) [https]\n",
      "18: China (Hong Kong) [https]\n",
      "19: China (Guangzhou) [https]\n",
      "20: China (Jinan) [https]\n",
      "21: China (Lanzhou) [https]\n",
      "22: China (Nanjing) [https]\n",
      "23: China (Shanghai 2) [https]\n",
      "24: China (Shenzhen) [https]\n",
      "25: Colombia (Cali) [https]\n",
      "26: Costa Rica [https]\n",
      "27: Czech Republic [https]\n",
      "28: Denmark [https]\n",
      "29: Ecuador (Cuenca) [https]\n",
      "30: France (Lyon 1) [https]\n",
      "31: France (Lyon 2) [https]\n",
      "32: France (Marseille) [https]\n",
      "33: France (Paris 1) [https]\n",
      "34: Germany (Erlangen) [https]\n",
      "35: Germany (Göttingen) [https]\n",
      "36: Germany (Leipzig) [https]\n",
      "37: Germany (Münster) [https]\n",
      "38: Greece [https]\n",
      "39: Iceland [https]\n",
      "40: India (Bengaluru) [https]\n",
      "41: India (Bhubaneswar) [https]\n",
      "42: Indonesia (Banda Aceh) [https]\n",
      "43: Iran (Mashhad) [https]\n",
      "44: Italy (Milano) [https]\n",
      "45: Italy (Padua) [https]\n",
      "46: Japan (Tokyo) [https]\n",
      "47: Japan (Yonezawa) [https]\n",
      "48: Korea (Gyeongsan-si) [https]\n",
      "49: Mexico (Mexico City) [https]\n",
      "50: Mexico (Texcoco) [https]\n",
      "51: Morocco [https]\n",
      "52: Netherlands (Dronten) [https]\n",
      "53: New Zealand [https]\n",
      "54: Norway [https]\n",
      "55: South Africa (Johannesburg) [https]\n",
      "56: Spain (A Coruña) [https]\n",
      "57: Spain (Madrid) [https]\n",
      "58: Sweden (Umeå) [https]\n",
      "59: Switzerland (Zurich 1) [https]\n",
      "60: Taiwan (Taipei) [https]\n",
      "61: Turkey (Denizli) [https]\n",
      "62: Turkey (Istanbul) [https]\n",
      "63: UK (Bristol) [https]\n",
      "64: UK (London 1) [https]\n",
      "65: USA (IA) [https]\n",
      "66: USA (MI) [https]\n",
      "67: USA (MO) [https]\n",
      "68: USA (OH) [https]\n",
      "69: USA (OR) [https]\n",
      "70: USA (TN) [https]\n",
      "71: United Arab Emirates [https]\n",
      "72: Uruguay [https]\n",
      "73: (other mirrors)\n",
      "\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "R[write to console]: trying URL 'https://ftp.osuosl.org/pub/cran/bin/macosx/big-sur-arm64/contrib/4.3/lme4_1.1-35.1.tgz'\n",
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      "R[write to console]: downloaded 6.5 MB\n",
      "\n",
      "\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "The downloaded binary packages are in\n",
      "\t/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T//RtmpcKOUEV/downloaded_packages\n"
     ]
    },
    {
     "data": {
      "text/plain": [
       "<rpy2.rinterface_lib.sexp.NULLType object at 0x171b0d210> [0]"
      ]
     },
     "execution_count": 10,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "import rpy2\n",
    "import rpy2.robjects as robjects\n",
    "import rpy2.ipython.html\n",
    "rpy2.ipython.html.init_printing()\n",
    "from rpy2.ipython.ggplot import image_png\n",
    "from rpy2.robjects.packages import importr, data\n",
    "utils = importr('utils')\n",
    "base = importr('base')\n",
    "utils.install_packages('stats')\n",
    "utils.install_packages('lme4')\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {},
   "outputs": [],
   "source": [
    "stats = importr('stats')\n",
    "lme4 = importr('lme4')\n",
    "import rpy2.robjects.lib.ggplot2 as ggplot2"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "R[write to console]: trying URL 'https://ftp.osuosl.org/pub/cran/bin/macosx/big-sur-arm64/contrib/4.3/Matrix_1.6-5.tgz'\n",
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      "R[write to console]: downloaded 5.1 MB\n",
      "\n",
      "\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "\n",
      "The downloaded binary packages are in\n",
      "\t/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T//RtmpcKOUEV/downloaded_packages\n"
     ]
    },
    {
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      "text/plain": [
       "<rpy2.rinterface_lib.sexp.NULLType object at 0x171b0d210> [0]"
      ]
     },
     "execution_count": 13,
     "metadata": {},
     "output_type": "execute_result"
    }
   ],
   "source": [
    "utils.install_packages('Matrix')"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {},
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "R[write to console]: also installing the dependency ‘Matrix’\n",
      "\n",
      "\n",
      "R[write to console]: trying URL 'https://ftp.osuosl.org/pub/cran/src/contrib/Matrix_1.6-5.tar.gz'\n",
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      "* installing *source* package ‘Matrix’ ...\n",
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     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Csparse.c -o Csparse.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c abIndex.c -o abIndex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c attrib.c -o attrib.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bind.c -o bind.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c chm_common.c -o chm_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cholmod-etc.c -o cholmod-etc.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c coerce.c -o coerce.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cs.c -o cs.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cs-etc.c -o cs-etc.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dense.c -o dense.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c determinant.c -o determinant.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dgCMatrix.c -o dgCMatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dgeMatrix.c -o dgeMatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c factorizations.c -o factorizations.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c idz.c -o idz.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c kappa.c -o kappa.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c objects.c -o objects.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c perm.c -o perm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c products.c -o products.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c solve.c -o solve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sparse.c -o sparse.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sparseVector.c -o sparseVector.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c subscript.c -o subscript.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils-R.c -o utils-R.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils.c -o utils.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c validity.c -o validity.o\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD'\n",
      "( cd Lib ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD/Lib'\n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD/Lib'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD'\n",
      "( cd Source ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD/Source'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/AMD'\n",
      "( cd Source ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/AMD/Source'\n",
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      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/SuiteSparse_config'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD'\n",
      "( cd Lib ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD/Lib'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_aat.c -o cholmod_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_add.c -o cholmod_add.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_band.c -o cholmod_band.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o\n"
     ]
    },
    {
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     "output_type": "stream",
     "text": [
      "In file included from ../Core/cholmod_change_factor.c:113:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_change_factor.c:115:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]\n",
      "    Int nsuper, xsize, ssize ;\n",
      "                ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                       ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                     ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "              ^\n",
      "../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "         ^\n",
      "../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "            ^\n",
      "../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                   ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                 ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;\n",
      "        ^\n",
      "../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "                    ^\n",
      "../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "         ^\n",
      "14 warnings generated.\n"
     ]
    },
    {
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     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_common.c -o cholmod_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_complex.c -o cholmod_complex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_copy.c -o cholmod_copy.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_dense.c -o cholmod_dense.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                        ^\n",
      "../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                    ^\n",
      "2 warnings generated.\n",
      "In file included from ../Core/cholmod_dense.c:45:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "            ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_dense.c:47:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_dense.c:49:\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz ;\n",
      "                 ^\n",
      "../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, n, nz ;\n",
      "              ^\n",
      "17 warnings generated.\n",
      "../Core/cholmod_factor.c:385:14: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "        if (xneed > Size_max ||\n",
      "                  ~ ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_error.c -o cholmod_error.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_factor.c -o cholmod_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "2 warnings generated.\n",
      "../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "    Int p, pend, j, ncol, packed, nzmax, nz, xtype ;\n",
      "                                  ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_memory.c -o cholmod_memory.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "In file included from ../Core/cholmod_transpose.c:121:\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:123:\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_transpose.c:125:\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_transpose.c:128:\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:130:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:133:\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "56 warnings generated.\n",
      "In file included from ../Core/cholmod_triplet.c:105:\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "            ^\n",
      "In file included from ../Core/cholmod_triplet.c:107:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_triplet.c:109:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;\n",
      "                   ^\n",
      "../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, p, k, stype, nrow, ncol, nz, ok ;\n",
      "                                           ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "10 warnings generated.\n",
      "../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;\n",
      "                                                            ^\n",
      "../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;\n",
      "                                    ^\n",
      "../Check/cholmod_check.c:1497:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]\n",
      "        ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;\n",
      "        ^\n",
      "../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,\n",
      "                                     ^\n",
      "../Check/cholmod_check.c:1495:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]\n",
      "        count, precise, init_print, ilast, lnz, head, tail, jprev, plast,\n",
      "               ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_version.c -o cholmod_version.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_check.c -o cholmod_check.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "5 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_read.c -o cholmod_read.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_write.c -o cholmod_write.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,\n",
      "                                ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                  ^\n",
      "../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                            ^\n",
      "../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]\n",
      "    Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,\n",
      "                                                                    ^\n",
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;\n",
      "                                    ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Cholesky/cholmod_rowfac.c:161:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:163:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:165:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:169:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:171:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:173:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "22 warnings generated.\n",
      "In file included from ../Cholesky/cholmod_solve.c:63:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "In file included from ../Cholesky/cholmod_solve.c:66:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]\n",
      "    Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;\n",
      "            ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../MatrixOps/cholmod_sdmult.c:44:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:46:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:48:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "11 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_updown.c -o cholmod_updown.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Modify/cholmod_updown.c:433:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]\n",
      "        *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;\n",
      "                                       ^\n",
      "1 warning generated.\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:82:\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:84:\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:86:\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "13 warnings generated.\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:26:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:28:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "4 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Supernodal/cholmod_super_symbolic.c:562:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]\n",
      "                Int totsize ;\n",
      "                    ^\n",
      "../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]\n",
      "    double max_fraction;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]\n",
      "    const char* env_max_fraction;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]\n",
      "    const char* env_max_bytes;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]\n",
      "    const char* env_use_gpu;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]\n",
      "    size_t max_bytes;\n",
      "           ^\n",
      "6 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Core/cholmod_change_factor.c:113:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_change_factor.c:115:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]\n",
      "    Int nsuper, xsize, ssize ;\n",
      "                ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                       ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                     ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "            ^\n",
      "../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "         ^\n",
      "../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "              ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                   ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                 ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;\n",
      "        ^\n",
      "../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "                    ^\n",
      "../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "         ^\n",
      "14 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                        ^\n",
      "../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                    ^\n",
      "2 warnings generated.\n",
      "In file included from ../Core/cholmod_dense.c:45:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "            ^\n",
      "In file included from ../Core/cholmod_dense.c:47:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_dense.c:49:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, n, nz ;\n",
      "              ^\n",
      "../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz ;\n",
      "                 ^\n",
      "17 warnings generated.\n",
      "../Core/cholmod_factor.c:385:14: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "        if (xneed > Size_max ||\n",
      "                  ~ ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "2 warnings generated.\n",
      "../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "    Int p, pend, j, ncol, packed, nzmax, nz, xtype ;\n",
      "                                  ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "In file included from ../Core/cholmod_transpose.c:121:\n",
      "../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "In file included from ../Core/cholmod_transpose.c:123:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_transpose.c:125:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:128:\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:130:\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:133:\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "56 warnings generated.\n",
      "In file included from ../Core/cholmod_triplet.c:105:\n",
      "../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "            ^\n",
      "In file included from ../Core/cholmod_triplet.c:107:\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_triplet.c:109:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;\n",
      "                   ^\n",
      "../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, p, k, stype, nrow, ncol, nz, ok ;\n",
      "                                           ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "10 warnings generated.\n",
      "../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;\n",
      "                                                            ^\n",
      "../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;\n",
      "                                    ^\n",
      "../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,\n",
      "                                     ^\n",
      "../Check/cholmod_check.c:1495:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]\n",
      "        count, precise, init_print, ilast, lnz, head, tail, jprev, plast,\n",
      "               ^\n",
      "../Check/cholmod_check.c:1497:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]\n",
      "        ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "5 warnings generated.\n",
      "../Check/cholmod_read.c:435:59: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "            if (nitems < 2 || nitems > 4 || l1 > Int_max || l2 > Int_max)\n",
      "                                                               ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n",
      "../Check/cholmod_read.c:435:43: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "            if (nitems < 2 || nitems > 4 || l1 > Int_max || l2 > Int_max)\n",
      "                                               ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2 warnings generated.\n",
      "../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,\n",
      "                                ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]\n",
      "    Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,\n",
      "                                                                    ^\n",
      "../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                            ^\n",
      "../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                  ^\n",
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;\n",
      "                                    ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Cholesky/cholmod_rowfac.c:161:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:163:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:165:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:169:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:171:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:173:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "22 warnings generated.\n",
      "In file included from ../Cholesky/cholmod_solve.c:63:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "In file included from ../Cholesky/cholmod_solve.c:66:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]\n",
      "    Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;\n",
      "            ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../MatrixOps/cholmod_sdmult.c:44:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:46:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:48:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "11 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Modify/cholmod_updown.c:433:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]\n",
      "        *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;\n",
      "                                       ^\n",
      "1 warning generated.\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:82:\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:84:\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:86:\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "13 warnings generated.\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:26:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:28:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "4 warnings generated.\n",
      "../Supernodal/cholmod_super_symbolic.c:562:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]\n",
      "                Int totsize ;\n",
      "                    ^\n",
      "../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]\n",
      "    const char* env_max_bytes;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]\n",
      "    const char* env_use_gpu;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]\n",
      "    size_t max_bytes;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]\n",
      "    double max_fraction;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]\n",
      "    const char* env_max_fraction;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:577:24: warning: implicit conversion from 'unsigned long' to 'double' changes value from 1152921504606846975 to 1152921504606846976 [-Wimplicit-const-int-float-conversion]\n",
      "                        (xtotsize < Int_max / sizeof (double)) ;\n",
      "                                  ~ ~~~~~~~~^~~~~~~~~~~~~~~~~\n",
      "../Supernodal/cholmod_super_symbolic.c:676:42: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "        if (ssize < 0 ||(find_xsize && xxsize > Int_max))\n",
      "                                              ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n",
      "8 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o\n",
      "ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o \n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD/Lib'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/CHOLMOD'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD'\n",
      "( cd Source ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile lib )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD/Source'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c colamd.c -o colamd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c colamd.c -o colamd_l.o\n",
      "ar -rucs ../../COLAMD.a colamd.o colamd_l.o\n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD/Source'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/COLAMD'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/AMD'\n",
      "( cd Source ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile lib )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/AMD/Source'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_1.c -o amd_i_1.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_2.c -o amd_i_2.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_order.c -o amd_i_order.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_control.c -o amd_i_control.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_info.c -o amd_i_info.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o\n",
      "ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o\n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/AMD/Source'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/SuiteSparse_config'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o\n",
      "ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuxI9sr/R.INSTALL2fb43043dd68/Matrix/src/SuiteSparse_config'\n",
      "clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Matrix.so Csparse.o abIndex.o attrib.o bind.o chm_common.o cholmod-etc.o coerce.o cs.o cs-etc.o dense.o determinant.o dgCMatrix.o dgeMatrix.o factorizations.o idz.o init.o kappa.o objects.o perm.o products.o solve.o sparse.o sparseVector.o subscript.o utils-R.o utils.o validity.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation\n"
     ]
    },
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      "make: *** [/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: Matrix.so] Error 1\n",
      "ERROR: compilation failed for package ‘Matrix’\n",
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   "source": [
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      "* installing *source* package ‘Matrix’ ...\n",
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     ]
    },
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     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c Csparse.c -o Csparse.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c abIndex.c -o abIndex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c attrib.c -o attrib.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c bind.c -o bind.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c chm_common.c -o chm_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cholmod-etc.c -o cholmod-etc.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c coerce.c -o coerce.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cs.c -o cs.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c cs-etc.c -o cs-etc.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dense.c -o dense.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c determinant.c -o determinant.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dgCMatrix.c -o dgCMatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c dgeMatrix.c -o dgeMatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c factorizations.c -o factorizations.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c idz.c -o idz.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c init.c -o init.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c kappa.c -o kappa.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c objects.c -o objects.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c perm.c -o perm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c products.c -o products.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c solve.c -o solve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sparse.c -o sparse.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c sparseVector.c -o sparseVector.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c subscript.c -o subscript.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils-R.c -o utils-R.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c utils.c -o utils.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I./SuiteSparse_config -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c validity.c -o validity.o\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD'\n",
      "( cd Lib ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD/Lib'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD'\n",
      "( cd Source ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD/Source'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD'\n",
      "( cd Source ; make clean )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD/Source'\n",
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      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/SuiteSparse_config'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/SuiteSparse_config'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD'\n",
      "( cd Lib ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD/Lib'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_aat.c -o cholmod_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_add.c -o cholmod_add.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_band.c -o cholmod_band.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Core/cholmod_change_factor.c:113:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_change_factor.c:115:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]\n",
      "    Int nsuper, xsize, ssize ;\n",
      "                ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                       ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                     ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "              ^\n",
      "../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "            ^\n",
      "../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "         ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                   ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                 ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;\n",
      "        ^\n",
      "../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "                    ^\n",
      "../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "         ^\n",
      "14 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_common.c -o cholmod_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_complex.c -o cholmod_complex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_copy.c -o cholmod_copy.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_dense.c -o cholmod_dense.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                    ^\n",
      "../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                        ^\n",
      "2 warnings generated.\n",
      "In file included from ../Core/cholmod_dense.c:45:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "            ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_dense.c:47:\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_dense.c:49:\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz ;\n",
      "                 ^\n",
      "../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, n, nz ;\n",
      "              ^\n",
      "17 warnings generated.\n",
      "../Core/cholmod_factor.c:385:14: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "        if (xneed > Size_max ||\n",
      "                  ~ ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_error.c -o cholmod_error.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_factor.c -o cholmod_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "2 warnings generated.\n",
      "../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "    Int p, pend, j, ncol, packed, nzmax, nz, xtype ;\n",
      "                                  ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_memory.c -o cholmod_memory.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_sparse.c -o cholmod_sparse.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "In file included from ../Core/cholmod_transpose.c:121:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "In file included from ../Core/cholmod_transpose.c:123:\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_transpose.c:125:\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_transpose.c:128:\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_transpose.c:130:\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:133:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_transpose.c -o cholmod_transpose.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "56 warnings generated.\n",
      "In file included from ../Core/cholmod_triplet.c:105:\n",
      "../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "            ^\n",
      "In file included from ../Core/cholmod_triplet.c:107:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_triplet.c:109:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;\n",
      "                   ^\n",
      "../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, p, k, stype, nrow, ncol, nz, ok ;\n",
      "                                           ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_triplet.c -o cholmod_triplet.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "10 warnings generated.\n",
      "../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;\n",
      "                                                            ^\n",
      "../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;\n",
      "                                    ^\n",
      "../Check/cholmod_check.c:1495:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]\n",
      "        count, precise, init_print, ilast, lnz, head, tail, jprev, plast,\n",
      "               ^\n",
      "../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,\n",
      "                                     ^\n",
      "../Check/cholmod_check.c:1497:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]\n",
      "        ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Core/cholmod_version.c -o cholmod_version.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_check.c -o cholmod_check.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "5 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_read.c -o cholmod_read.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Check/cholmod_write.c -o cholmod_write.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,\n",
      "                                ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]\n",
      "    Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,\n",
      "                                                                    ^\n",
      "../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                  ^\n",
      "../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                            ^\n",
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;\n",
      "                                    ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Cholesky/cholmod_rowfac.c:161:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:163:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:165:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:169:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:171:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:173:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "22 warnings generated.\n",
      "In file included from ../Cholesky/cholmod_solve.c:63:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "In file included from ../Cholesky/cholmod_solve.c:66:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]\n",
      "    Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;\n",
      "            ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../MatrixOps/cholmod_sdmult.c:44:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:46:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:48:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "11 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Modify/cholmod_updown.c -o cholmod_updown.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Modify/cholmod_updown.c:433:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]\n",
      "        *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;\n",
      "                                       ^\n",
      "1 warning generated.\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:82:\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:84:\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:86:\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "13 warnings generated.\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:26:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:28:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "4 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Supernodal/cholmod_super_symbolic.c:562:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]\n",
      "                Int totsize ;\n",
      "                    ^\n",
      "../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]\n",
      "    double max_fraction;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]\n",
      "    const char* env_max_fraction;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]\n",
      "    size_t max_bytes;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]\n",
      "    const char* env_max_bytes;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]\n",
      "    const char* env_use_gpu;\n",
      "                ^\n",
      "6 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_aat.c -o cholmod_l_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_add.c -o cholmod_l_add.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_band.c -o cholmod_l_band.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Core/cholmod_change_factor.c:113:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_change_factor.c:115:\n",
      "../Core/t_cholmod_change_factor.c:37:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:262:17: warning: variable 'xsize' set but not used [-Wunused-but-set-variable]\n",
      "    Int nsuper, xsize, ssize ;\n",
      "                ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                       ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:525:21: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "                xlnz = MIN (xlnz, Size_max) ;\n",
      "                     ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:677:15: warning: variable 'Li' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "              ^\n",
      "../Core/cholmod_change_factor.c:676:13: warning: variable 'Lx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "            ^\n",
      "../Core/cholmod_change_factor.c:676:18: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Lz ;\n",
      "                 ^\n",
      "../Core/cholmod_change_factor.c:677:10: warning: variable 'Lp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Lp, *Li, *Lnz ;\n",
      "         ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                   ~~~~~~~~~~~^~~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:27: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                       ~  ^\n",
      "../Core/cholmod_change_factor.c:757:24: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "            xlnz = MIN (xlnz, Size_max) ;\n",
      "                 ~            ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n",
      "../Include/cholmod_internal.h:98:40: note: expanded from macro 'MIN'\n",
      "#define MIN(a,b) (((a) < (b)) ? (a) : (b))\n",
      "                                       ^\n",
      "../Core/cholmod_change_factor.c:823:10: warning: variable 'Ls' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "         ^\n",
      "../Core/cholmod_change_factor.c:824:9: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, lnz, s, nsuper, psi, psend, nsrow, nscol, k1, k2, erows ;\n",
      "        ^\n",
      "../Core/cholmod_change_factor.c:823:21: warning: variable 'Lpx' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ls, *Lpi, *Lpx, *Super, *Li ;\n",
      "                    ^\n",
      "14 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_common.c -o cholmod_l_common.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_complex.c -o cholmod_l_complex.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_copy.c -o cholmod_l_copy.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_dense.c -o cholmod_l_dense.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Core/cholmod_copy.c:275:21: warning: variable 'up' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                    ^\n",
      "../Core/cholmod_copy.c:275:25: warning: variable 'lo' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, up, lo, values, diag, astype ;\n",
      "                        ^\n",
      "2 warnings generated.\n",
      "In file included from ../Core/cholmod_dense.c:45:\n",
      "../Core/t_cholmod_dense.c:27:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "            ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "In file included from ../Core/cholmod_dense.c:47:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_dense.c:49:\n",
      "../Core/t_cholmod_dense.c:27:23: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:27:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Xx, *Az, *Xz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:28: warning: variable 'Cz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:133:23: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Cx, *Xz, *Cz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_dense.c:226:28: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_dense.c:226:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz, *Yx, *Yz ;\n",
      "                 ^\n",
      "../Core/cholmod_dense.c:300:15: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, n, nz ;\n",
      "              ^\n",
      "../Core/cholmod_dense.c:299:18: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Xx, *Xz ;\n",
      "                 ^\n",
      "17 warnings generated.\n",
      "../Core/cholmod_factor.c:385:14: warning: implicit conversion from 'size_t' (aka 'unsigned long') to 'double' changes value from 18446744073709551615 to 18446744073709551616 [-Wimplicit-const-int-float-conversion]\n",
      "        if (xneed > Size_max ||\n",
      "                  ~ ^~~~~~~~\n",
      "../Include/cholmod_internal.h:207:19: note: expanded from macro 'Size_max'\n",
      "#define Size_max ((size_t) (-1))\n",
      "                  ^~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_error.c -o cholmod_l_error.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_factor.c -o cholmod_l_factor.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "../Core/cholmod_memory.c:121:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "../Core/cholmod_memory.c:311:12: warning: unused variable 's' [-Wunused-variable]\n",
      "    size_t s ;\n",
      "           ^\n",
      "2 warnings generated.\n",
      "../Core/cholmod_sparse.c:485:35: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "    Int p, pend, j, ncol, packed, nzmax, nz, xtype ;\n",
      "                                  ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_memory.c -o cholmod_l_memory.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_sparse.c -o cholmod_l_sparse.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "1 warning generated.\n",
      "In file included from ../Core/cholmod_transpose.c:121:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:23: warning: variable 'Fx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:139:13: warning: variable 'Ax' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "            ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "In file included from ../Core/cholmod_transpose.c:123:\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:125:\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:128:\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:42:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:42:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:139:28: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_transpose.c:139:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:130:\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n",
      "In file included from ../Core/cholmod_transpose.c:133:\n",
      "../Core/t_cholmod_transpose.c:43:31: warning: variable 'Fnz' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                              ^\n",
      "../Core/t_cholmod_transpose.c:43:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fnz, *Fj, *Wi, *Iwork ;\n",
      "                         ^\n",
      "../Core/t_cholmod_transpose.c:44:69: warning: variable 'permute' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                                    ^\n",
      "../Core/t_cholmod_transpose.c:44:21: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                    ^\n",
      "../Core/t_cholmod_transpose.c:44:56: warning: variable 'Fpacked' set but not used [-Wunused-but-set-variable]\n",
      "    Int j, p, pend, nrow, ncol, Apacked, use_fset, fp, Fpacked, jj, permute ;\n",
      "                                                       ^\n",
      "../Core/t_cholmod_transpose.c:140:26: warning: variable 'Fp' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Ap, *Anz, *Ai, *Fp, *Fj, *Wi, *Pinv, *Iwork ;\n",
      "                         ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_transpose.c -o cholmod_l_transpose.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "56 warnings generated.\n",
      "In file included from ../Core/cholmod_triplet.c:105:\n",
      "../Core/t_cholmod_triplet.c:28:13: warning: variable 'Rx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "            ^\n",
      "../Core/t_cholmod_triplet.c:28:23: warning: variable 'Tx' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                      ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_triplet.c:107:\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "In file included from ../Core/cholmod_triplet.c:109:\n",
      "../Core/t_cholmod_triplet.c:28:28: warning: variable 'Tz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                           ^\n",
      "../Core/t_cholmod_triplet.c:28:18: warning: variable 'Rz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Rx, *Rz, *Tx, *Tz ;\n",
      "                 ^\n",
      "../Core/cholmod_triplet.c:341:20: warning: variable 'Ri' set but not used [-Wunused-but-set-variable]\n",
      "    Int *Wj, *Rp, *Ri, *Rnz, *Ti, *Tj ;\n",
      "                   ^\n",
      "../Core/cholmod_triplet.c:342:44: warning: variable 'ok' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, p, k, stype, nrow, ncol, nz, ok ;\n",
      "                                           ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_triplet.c -o cholmod_l_triplet.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "10 warnings generated.\n",
      "../Check/cholmod_check.c:204:61: warning: variable 'init_print' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, nrow, nmethods, ordering, xworksize, amd_backup, init_print ;\n",
      "                                                            ^\n",
      "../Check/cholmod_check.c:950:37: warning: variable 'nz' set but not used [-Wunused-but-set-variable]\n",
      "    Int i, j, d, nrow, ncol, nzmax, nz, init_print, count, xtype ;\n",
      "                                    ^\n",
      "../Check/cholmod_check.c:1494:38: warning: variable 'ordering' set but not used [-Wunused-but-set-variable]\n",
      "    Int n, nzmax, j, p, pend, i, nz, ordering, space, is_monotonic, minor,\n",
      "                                     ^\n",
      "../Check/cholmod_check.c:1495:9: warning: variable 'precise' set but not used [-Wunused-but-set-variable]\n",
      "        count, precise, init_print, ilast, lnz, head, tail, jprev, plast,\n",
      "               ^\n",
      "../Check/cholmod_check.c:1497:2: warning: variable 'ps2' set but not used [-Wunused-but-set-variable]\n",
      "        ps2, psxend, ssize, xsize, maxcsize, maxesize, nsrow2, jj, ii, xtype ;\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Core/cholmod_version.c -o cholmod_l_version.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_check.c -o cholmod_l_check.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "5 warnings generated.\n",
      "../Check/cholmod_read.c:435:59: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "            if (nitems < 2 || nitems > 4 || l1 > Int_max || l2 > Int_max)\n",
      "                                                               ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n",
      "../Check/cholmod_read.c:435:43: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "            if (nitems < 2 || nitems > 4 || l1 > Int_max || l2 > Int_max)\n",
      "                                               ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_read.c -o cholmod_l_read.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "2 warnings generated.\n",
      "../Check/cholmod_write.c:366:33: warning: variable 'symmetry' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, is_complex, symmetry, i, j, q, iz, p, nz, is_binary, stype,\n",
      "                                ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Check/cholmod_write.c -o cholmod_l_write.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_analyze.c:419:69: warning: variable 'ncol' set but not used [-Wunused-but-set-variable]\n",
      "    Int k, n, ordering, method, nmethods, status, default_strategy, ncol, uncol,\n",
      "                                                                    ^\n",
      "../Cholesky/cholmod_analyze.c:416:35: warning: variable 'Cmember' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                  ^\n",
      "../Cholesky/cholmod_analyze.c:416:45: warning: variable 'CParent' set but not used [-Wunused-but-set-variable]\n",
      "    Int *First, *Level, *Work4n, *Cmember, *CParent, *ColCount, *Lperm, *Parent,\n",
      "                                            ^\n",
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Cholesky/cholmod_factorize.c:111:37: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "    Int nrow, ncol, stype, convert, n, nsuper, grow2, status ;\n",
      "                                    ^\n",
      "1 warning generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../Cholesky/cholmod_rowfac.c:161:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:163:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:165:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:169:\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:171:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:28: warning: variable 'Lz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                           ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                 ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:48: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                               ^\n",
      "../Cholesky/t_cholmod_rowfac.c:46:38: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Lx, *Lz, *Wx, *Wz, *Fx, *Fz ;\n",
      "                                     ^\n",
      "In file included from ../Cholesky/cholmod_rowfac.c:173:\n",
      "../Cholesky/t_cholmod_rowfac.c:50:46: warning: variable 'nzmax' set but not used [-Wunused-but-set-variable]\n",
      "        use_dbound, packed, stype, Fpacked, sorted, nzmax, len, parent ;\n",
      "                                                    ^\n",
      "22 warnings generated.\n",
      "In file included from ../Cholesky/cholmod_solve.c:63:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "In file included from ../Cholesky/cholmod_solve.c:66:\n",
      "../Cholesky/t_cholmod_solve.c:61:23: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Yx, *Yz ;\n",
      "                      ^\n",
      "../Cholesky/cholmod_solve.c:334:13: warning: variable 'nk' set but not used [-Wunused-but-set-variable]\n",
      "    Int k2, nk, p, k, j, nrow, ncol, d, dj, j2 ;\n",
      "            ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "3 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "In file included from ../MatrixOps/cholmod_sdmult.c:44:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:46:\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:47: warning: variable 'Wz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                              ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:28: warning: variable 'Xz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                           ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:38: warning: variable 'Yz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                                     ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "../MatrixOps/t_cholmod_sdmult.c:49:18: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Ax, *Az, *Xx, *Xz, *Yx, *Yz, *w, *Wz ;\n",
      "                 ^\n",
      "In file included from ../MatrixOps/cholmod_sdmult.c:48:\n",
      "../MatrixOps/t_cholmod_sdmult.c:52:17: warning: variable 'nrow' set but not used [-Wunused-but-set-variable]\n",
      "    Int packed, nrow, ncol, j, k, p, pend, kcol, i ;\n",
      "                ^\n",
      "11 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Modify/cholmod_updown.c -o cholmod_l_updown.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "../Modify/cholmod_updown.c:433:33: warning: variable 'ps1' set but not used [-Wunused-but-set-variable]\n",
      "        *Set_ps1 [32], *Set_ps2 [32], *ps1, *ps2 ;\n",
      "                                       ^\n",
      "1 warning generated.\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:82:\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:84:\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:33: warning: variable 'Fz' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                                ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:108:28: warning: variable 'Az' set but not used [-Wunused-but-set-variable]\n",
      "    double *Lx, *Ax, *Fx, *Az, *Fz, *C ;\n",
      "                           ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "In file included from ../Supernodal/cholmod_super_numeric.c:86:\n",
      "../Supernodal/t_cholmod_super_numeric.c:111:10: warning: variable 'Previous' set but not used [-Wunused-but-set-variable]\n",
      "        *Previous;\n",
      "         ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:116:9: warning: unused variable 'tail' [-Wunused-variable]\n",
      "        tail, nscol_new = 0;\n",
      "        ^\n",
      "../Supernodal/t_cholmod_super_numeric.c:113:9: warning: unused variable 'pj' [-Wunused-variable]\n",
      "        pj, d, kd1, kd2, info, ndcol, ndrow, pdi, pdx, pdend, pdi1, pdi2, pdx1,\n",
      "        ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "13 warnings generated.\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:26:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "In file included from ../Supernodal/cholmod_super_solve.c:28:\n",
      "../Supernodal/t_cholmod_super_solve.c:30:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n",
      "../Supernodal/t_cholmod_super_solve.c:238:10: warning: variable 'n' set but not used [-Wunused-but-set-variable]\n",
      "        nsrow2, n, ps2, j, i, d, nrhs ;\n",
      "                ^\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "4 warnings generated.\n",
      "../Supernodal/cholmod_super_symbolic.c:562:7: warning: variable 'totsize' set but not used [-Wunused-but-set-variable]\n",
      "                Int totsize ;\n",
      "                    ^\n",
      "../Supernodal/cholmod_super_symbolic.c:184:17: warning: unused variable 'env_max_fraction' [-Wunused-variable]\n",
      "    const char* env_max_fraction;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:185:12: warning: unused variable 'max_fraction' [-Wunused-variable]\n",
      "    double max_fraction;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:181:17: warning: unused variable 'env_use_gpu' [-Wunused-variable]\n",
      "    const char* env_use_gpu;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:182:17: warning: unused variable 'env_max_bytes' [-Wunused-variable]\n",
      "    const char* env_max_bytes;\n",
      "                ^\n",
      "../Supernodal/cholmod_super_symbolic.c:183:12: warning: unused variable 'max_bytes' [-Wunused-variable]\n",
      "    size_t max_bytes;\n",
      "           ^\n",
      "../Supernodal/cholmod_super_symbolic.c:577:24: warning: implicit conversion from 'unsigned long' to 'double' changes value from 1152921504606846975 to 1152921504606846976 [-Wimplicit-const-int-float-conversion]\n",
      "                        (xtotsize < Int_max / sizeof (double)) ;\n",
      "                                  ~ ~~~~~~~~^~~~~~~~~~~~~~~~~\n",
      "../Supernodal/cholmod_super_symbolic.c:676:42: warning: implicit conversion from 'long' to 'double' changes value from 9223372036854775807 to 9223372036854775808 [-Wimplicit-const-int-float-conversion]\n",
      "        if (ssize < 0 ||(find_xsize && xxsize > Int_max))\n",
      "                                              ~ ^~~~~~~\n",
      "../Include/cholmod_internal.h:222:17: note: expanded from macro 'Int_max'\n",
      "#define Int_max SuiteSparse_long_max\n",
      "                ^~~~~~~~~~~~~~~~~~~~\n",
      "../../SuiteSparse_config/SuiteSparse_config.h:66:30: note: expanded from macro 'SuiteSparse_long_max'\n",
      "#define SuiteSparse_long_max LONG_MAX\n",
      "                             ^~~~~~~~\n",
      "/opt/homebrew/anaconda3/lib/clang/14.0.6/include/limits.h:47:19: note: expanded from macro 'LONG_MAX'\n",
      "#define LONG_MAX  __LONG_MAX__\n",
      "                  ^~~~~~~~~~~~\n",
      "<built-in>:48:22: note: expanded from here\n",
      "#define __LONG_MAX__ 9223372036854775807L\n",
      "                     ^~~~~~~~~~~~~~~~~~~~\n",
      "8 warnings generated.\n"
     ]
    },
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -DDLONG -c  ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o\n",
      "ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o  cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o \n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD/Lib'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/CHOLMOD'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD'\n",
      "( cd Source ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile lib )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD/Source'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c colamd.c -o colamd.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c colamd.c -o colamd_l.o\n",
      "ar -rucs ../../COLAMD.a colamd.o colamd_l.o\n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD/Source'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/COLAMD'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD'\n",
      "( cd Source ; make -f \"/Library/Frameworks/R.framework/Resources/etc/Makeconf\" -f Makefile lib )\n",
      "make[2]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD/Source'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_1.c -o amd_i_1.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_1.c -o amd_l_1.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_2.c -o amd_i_2.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_2.c -o amd_l_2.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_order.c -o amd_i_order.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_order.c -o amd_l_order.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_control.c -o amd_i_control.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_control.c -o amd_l_control.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_info.c -o amd_i_info.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_info.c -o amd_l_info.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -I../Include -I../../SuiteSparse_config  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o\n",
      "ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o\n",
      "make[2]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD/Source'\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/AMD'\n",
      "make[1]: Entering directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/SuiteSparse_config'\n",
      "clang -arch arm64 -I\"/Library/Frameworks/R.framework/Resources/include\" -DNDEBUG -DNTIMER  -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c SuiteSparse_config.c -o SuiteSparse_config.o\n",
      "ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o\n",
      "make[1]: Leaving directory '/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpuCOuw2/R.INSTALL2eb05932e586/Matrix/src/SuiteSparse_config'\n",
      "clang -arch arm64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/arm64/lib -o Matrix.so Csparse.o abIndex.o attrib.o bind.o chm_common.o cholmod-etc.o coerce.o cs.o cs-etc.o dense.o determinant.o dgCMatrix.o dgeMatrix.o factorizations.o idz.o init.o kappa.o objects.o perm.o products.o solve.o sparse.o sparseVector.o subscript.o utils-R.o utils.o validity.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lemutls_w -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation\n"
     ]
    },
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "ld: warning: directory not found for option '-L/opt/gfortran/lib/gcc/aarch64-apple-darwin20.0/12.2.0'\n",
      "ld: warning: directory not found for option '-L/opt/gfortran/lib'\n",
      "ld: library not found for -lgfortran\n",
      "clang-14: error: linker command failed with exit code 1 (use -v to see invocation)\n",
      "make: *** [/Library/Frameworks/R.framework/Resources/share/make/shlib.mk:10: Matrix.so] Error 1\n",
      "ERROR: compilation failed for package ‘Matrix’\n",
      "* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/Matrix’\n",
      "ERROR: dependency ‘Matrix’ is not available for package ‘lme4’\n",
      "* removing ‘/Library/Frameworks/R.framework/Versions/4.3-arm64/Resources/library/lme4’\n",
      "R[write to console]: \n",
      "\n",
      "R[write to console]: \n",
      "R[write to console]: The downloaded source packages are in\n",
      "\t‘/private/var/folders/g_/b1twxg5159dc5n5_hm9nxdgm0000gn/T/RtmpcKOUEV/downloaded_packages’\n",
      "R[write to console]: \n",
      "R[write to console]: \n",
      "\n"
     ]
    },
    {
     "ename": "PackageNotInstalledError",
     "evalue": "The R package \"lme4\" is not installed.",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mPackageNotInstalledError\u001b[0m                  Traceback (most recent call last)",
      "\u001b[1;32m/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb Cell 16\u001b[0m line \u001b[0;36m9\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X24sZmlsZQ%3D%3D?line=5'>6</a>\u001b[0m utils\u001b[39m.\u001b[39minstall_packages(\u001b[39m'\u001b[39m\u001b[39mlme4\u001b[39m\u001b[39m'\u001b[39m, \u001b[39mtype\u001b[39m\u001b[39m=\u001b[39m\u001b[39m'\u001b[39m\u001b[39msource\u001b[39m\u001b[39m'\u001b[39m)\n\u001b[1;32m      <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X24sZmlsZQ%3D%3D?line=7'>8</a>\u001b[0m \u001b[39m# import lme4 package\u001b[39;00m\n\u001b[0;32m----> <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X24sZmlsZQ%3D%3D?line=8'>9</a>\u001b[0m lme4 \u001b[39m=\u001b[39m importr(\u001b[39m'\u001b[39m\u001b[39mlme4\u001b[39m\u001b[39m'\u001b[39m)\n",
      "File \u001b[0;32m/opt/homebrew/anaconda3/lib/python3.11/site-packages/rpy2/robjects/packages.py:472\u001b[0m, in \u001b[0;36mimportr\u001b[0;34m(name, lib_loc, robject_translations, signature_translation, suppress_messages, on_conflict, symbol_r2python, symbol_resolve, data)\u001b[0m\n\u001b[1;32m    440\u001b[0m \u001b[39m\u001b[39m\u001b[39m\"\"\" Import an R package.\u001b[39;00m\n\u001b[1;32m    441\u001b[0m \n\u001b[1;32m    442\u001b[0m \u001b[39mArguments:\u001b[39;00m\n\u001b[0;32m   (...)\u001b[0m\n\u001b[1;32m    468\u001b[0m \n\u001b[1;32m    469\u001b[0m \u001b[39m\"\"\"\u001b[39;00m\n\u001b[1;32m    471\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m isinstalled(name, lib_loc\u001b[39m=\u001b[39mlib_loc):\n\u001b[0;32m--> 472\u001b[0m     \u001b[39mraise\u001b[39;00m PackageNotInstalledError(\n\u001b[1;32m    473\u001b[0m         \u001b[39m'\u001b[39m\u001b[39mThe R package \u001b[39m\u001b[39m\"\u001b[39m\u001b[39m%s\u001b[39;00m\u001b[39m\"\u001b[39m\u001b[39m is not installed.\u001b[39m\u001b[39m'\u001b[39m \u001b[39m%\u001b[39m name\n\u001b[1;32m    474\u001b[0m     )\n\u001b[1;32m    476\u001b[0m \u001b[39mif\u001b[39;00m suppress_messages:\n\u001b[1;32m    477\u001b[0m     ok \u001b[39m=\u001b[39m quiet_require(name, lib_loc\u001b[39m=\u001b[39mlib_loc)\n",
      "\u001b[0;31mPackageNotInstalledError\u001b[0m: The R package \"lme4\" is not installed."
     ]
    }
   ],
   "source": [
    "# remove packages\n",
    "utils.remove_packages('Matrix')\n",
    "utils.remove_packages('lme4')\n",
    "\n",
    "# install lme4 package from source\n",
    "utils.install_packages('lme4', type='source')\n",
    "\n",
    "# import lme4 package\n",
    "lme4 = importr('lme4')"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "# GLMM"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {},
   "outputs": [
    {
     "ename": "PackageNotInstalledError",
     "evalue": "The R package \"lme4\" is not installed.",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mPackageNotInstalledError\u001b[0m                  Traceback (most recent call last)",
      "\u001b[1;32m/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb Cell 19\u001b[0m line \u001b[0;36m1\n\u001b[1;32m     <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X21sZmlsZQ%3D%3D?line=12'>13</a>\u001b[0m rdf \u001b[39m=\u001b[39m pandas2ri\u001b[39m.\u001b[39mpy2rpy(df)\n\u001b[1;32m     <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X21sZmlsZQ%3D%3D?line=14'>15</a>\u001b[0m \u001b[39m# Import the necessary R packages\u001b[39;00m\n\u001b[0;32m---> <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X21sZmlsZQ%3D%3D?line=15'>16</a>\u001b[0m lme4 \u001b[39m=\u001b[39m importr(\u001b[39m'\u001b[39m\u001b[39mlme4\u001b[39m\u001b[39m'\u001b[39m)\n\u001b[1;32m     <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X21sZmlsZQ%3D%3D?line=16'>17</a>\u001b[0m base \u001b[39m=\u001b[39m importr(\u001b[39m'\u001b[39m\u001b[39mbase\u001b[39m\u001b[39m'\u001b[39m)\n\u001b[1;32m     <a href='vscode-notebook-cell:/Users/jeffreychen/Desktop/SALK/ucsdpracticum/glmm.ipynb#X21sZmlsZQ%3D%3D?line=17'>18</a>\u001b[0m Matrix \u001b[39m=\u001b[39m importr(\u001b[39m'\u001b[39m\u001b[39mMatrix\u001b[39m\u001b[39m'\u001b[39m)\n",
      "File \u001b[0;32m/opt/homebrew/anaconda3/lib/python3.11/site-packages/rpy2/robjects/packages.py:472\u001b[0m, in \u001b[0;36mimportr\u001b[0;34m(name, lib_loc, robject_translations, signature_translation, suppress_messages, on_conflict, symbol_r2python, symbol_resolve, data)\u001b[0m\n\u001b[1;32m    440\u001b[0m \u001b[39m\u001b[39m\u001b[39m\"\"\" Import an R package.\u001b[39;00m\n\u001b[1;32m    441\u001b[0m \n\u001b[1;32m    442\u001b[0m \u001b[39mArguments:\u001b[39;00m\n\u001b[0;32m   (...)\u001b[0m\n\u001b[1;32m    468\u001b[0m \n\u001b[1;32m    469\u001b[0m \u001b[39m\"\"\"\u001b[39;00m\n\u001b[1;32m    471\u001b[0m \u001b[39mif\u001b[39;00m \u001b[39mnot\u001b[39;00m isinstalled(name, lib_loc\u001b[39m=\u001b[39mlib_loc):\n\u001b[0;32m--> 472\u001b[0m     \u001b[39mraise\u001b[39;00m PackageNotInstalledError(\n\u001b[1;32m    473\u001b[0m         \u001b[39m'\u001b[39m\u001b[39mThe R package \u001b[39m\u001b[39m\"\u001b[39m\u001b[39m%s\u001b[39;00m\u001b[39m\"\u001b[39m\u001b[39m is not installed.\u001b[39m\u001b[39m'\u001b[39m \u001b[39m%\u001b[39m name\n\u001b[1;32m    474\u001b[0m     )\n\u001b[1;32m    476\u001b[0m \u001b[39mif\u001b[39;00m suppress_messages:\n\u001b[1;32m    477\u001b[0m     ok \u001b[39m=\u001b[39m quiet_require(name, lib_loc\u001b[39m=\u001b[39mlib_loc)\n",
      "\u001b[0;31mPackageNotInstalledError\u001b[0m: The R package \"lme4\" is not installed."
     ]
    }
   ],
   "source": [
    "import pandas as pd\n",
    "import rpy2.robjects as ro\n",
    "from rpy2.robjects import pandas2ri\n",
    "from rpy2.robjects.packages import importr\n",
    "\n",
    "# Assuming df is your DataFrame\n",
    "df = encoded\n",
    "\n",
    "# Enable automatic conversion from pandas to R\n",
    "pandas2ri.activate()\n",
    "\n",
    "# Convert the DataFrame to an R object\n",
    "rdf = pandas2ri.py2rpy(df)\n",
    "\n",
    "# Import the necessary R packages\n",
    "lme4 = importr('lme4')\n",
    "base = importr('base')\n",
    "Matrix = importr('Matrix')\n",
    "\n",
    "# Define the model formula\n",
    "# Replace this with your actual formula\n",
    "formula = 'Signal ~ (1|Subject) + Deaf + dB_encoded + Frequency_8000 + Frequency_16000 + Frequency_24000 + Frequency_32000'\n",
    "\n",
    "# Fit the model\n",
    "fit = lme4.glmer(formula, data=rdf, family=ro.r('binomial'))\n",
    "\n",
    "# Print the summary\n",
    "print(base.summary(fit))\n"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": null,
   "metadata": {},
   "outputs": [],
   "source": []
  }
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