bioinformatics-toolbox
is a Docker container for common bioinformatics and genomics related tools.
The list of the installed tools and packages can be found here
The built image can be downloaded as follows:
sudo docker run -it ghcr.io/ahmedmoustafa/bioinformatics-tools /bin/bash
git clone https://github.com/ahmedmoustafa/bioinformatics-toolbox.git
cd bioinformatics-toolbox/
sudo docker build -t bioinformatics-toolbox .
sudo docker run -it bioinformatics-toolbox
- The size of the image is about 30 GB.
- Building the image (option #2) from the
Dockerfile
takes about six hours on a Google Cloud machine type e2-medium in zone us-west2-a.
If you use bioinformatics-toolbox
in your work, please cite DOI 10.5281/zenodo.4936052