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Commits on Jul 1, 2017

• debuggind mg_plot

  ampatzia

  committedJul 1, 2017
  3937b64

• 🐛 Members variable name broke the code, changed to n_memb

  ampatzia

  committedJul 1, 2017
  7a5e859

• 💡 Add gene number/ number oif clusters plot, deprecated summary table from gridplot.

  ampatzia

  committedJul 1, 2017
  a3f5595

Commits on Jun 26, 2017

• Added forgotten(?) -1 in estimates[3] <- log(n) * (np + K -1) - 2 * est$value

  ampatzia

  committedJun 26, 2017
  95b5278

• 📝 Corrected deprecated parameters found in vignette

  ampatzia

  committedJun 26, 2017
  3cc0bf6

• Lowered relative tolerance in binomixmachine 1e-6 to 1e-8

  ampatzia

  committedJun 26, 2017
  f404c59

Commits on Jun 19, 2017

• 💡 📝 Added function to cluster pm_cluster() , updated import MCL function documentation, added commentary on helper functions

  ampatzia

  committedJun 19, 2017
  64635f3

Commits on Jun 16, 2017

• Merge branch 'master' of https://github.com/ampatzia/pasaR

  ampatzia

  committedJun 16, 2017
  0db4fb8

• merge clash

  ampatzia

  committedJun 16, 2017
  8f691cb

• 🐛 improper use of == in missing broke code

  ampatzia

  committedJun 16, 2017
  26e6401

• 📝 changed n.perm to n_perm to follow style

  ampatzia

  committedJun 16, 2017
  d18df9c

• 🐛 corrected erroneous use of equal sign in if clause

  ampatzia

  committedJun 16, 2017
  b3abc30

• ...

  ampatzia

  committedJun 16, 2017
  728f9f9

• 💡 Added log to axis labels in appropriate plots

  ampatzia

  committedJun 16, 2017
  8cb671d

Commits on Jun 15, 2017

• 🐛 typo affected internal of function grid_plot

  ampatzia

  committedJun 15, 2017
  a8861bd

• 💡 ✏️ ⬆️ Added grid_plot function with documentation, fixed dependecies, typos and existing documentation.

  ampatzia

  committedJun 15, 2017
  8f5190c

• 🐛 tidying of plot functions

  ampatzia

  committedJun 15, 2017
  0970f42

Commits on Jun 14, 2017

• 🐛 use_log argument was missing in gp_plot

  ampatzia

  committedJun 14, 2017
  9a2bf61

• 💡 Added rescaling of y axes with log as a default in all plots.

  ampatzia

  committedJun 14, 2017
  9d3c133

Commits on May 2, 2017

• Merge branch 'master' of https://github.com/ampatzia/pasaR

  ampatzia

  committedMay 2, 2017
  a21e0c5

• Corrected erroneous function name (org_name function)

  ampatzia

  committedMay 2, 2017
  d974f38

Commits on May 1, 2017

• Update README.md

  ampatzia

  committedMay 1, 2017
  4c992f0

Commits on Apr 28, 2017

• Removed a) reshape2 dependecy, b) benchmark comparison with micropan from vignette

  ampatzia

  committedApr 28, 2017
  8361b0a

Commits on Apr 27, 2017

• Added cluster_number() function, to determine number of gene cluster based on fluidity. Added dependecies (stringr,fpc).

  ampatzia

  committedApr 27, 2017
  2499410

Commits on Apr 22, 2017

• Update README.md

  ampatzia

  committedApr 22, 2017
  8941616

• Updated ReadMe: Installation with devtools instructions

  ampatzia

  committedApr 22, 2017
  126e382

• microbenchmarking crashed vignette building

  ampatzia

  committedApr 22, 2017
  e9ee898

Commits on Apr 2, 2017

• Did not commit by mistake.

  ampatzia

  committedApr 2, 2017
  b09948e

• Added vignette & minor documentation cleaning.

  ampatzia

  committedApr 2, 2017
  7fac463

• Merge branch 'master' of https://github.com/ampatzia/pasaR

  ampatzia

  committedApr 2, 2017
  348f393

• Fluidity changes

  ampatzia

  committedApr 2, 2017
  dcc53e4

Commits on Apr 1, 2017

• Update README.md

  ampatzia

  committedApr 1, 2017
  2e447d6

• Documentation update. Adding references & details.

  ampatzia

  committedApr 1, 2017
  ba4ef8e

• Update README.md

  ampatzia

  committedApr 1, 2017
  9481668

• Merge branch 'master' of https://github.com/ampatzia/pasaR

  ampatzia

  committedApr 1, 2017
  4f7b8a3

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