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Commits on Mar 23, 2020

• Latest version of the workshop added to the vignettes, with batch simulation and batch correction per file or per batch (most of this work was done by Katrien Quintelier)

  

  svgassen

  committedMar 23, 2020
  2450059

Commits on Nov 18, 2019

• update vignette

  

  svgassen

  committedNov 18, 2019
  6c5d8d1

Commits on Nov 13, 2019

• Change sign in the statistics

  

  svgassen

  committedNov 13, 2019
  63f44a4

• Update to also be able to use an aggregated flowframe for the plot_aggregate function

  

  svgassen

  committedNov 13, 2019
  ecb6d4b

Commits on Jul 8, 2019

• Added pregated file, so the workshop can be given without any FlowJo dependencies.

  

  svgassen

  committedJul 8, 2019
  742e473

Commits on Jul 3, 2019

• Updated intro to also include export to xlsx, pdf and png

  

  svgassen

  committedJul 3, 2019
  c833604

Commits on Jul 2, 2019

• Bugfix in plot_MFIs

  

  svgassen

  committedJul 2, 2019
  39acd77

• Merge branch 'master' of https://github.com/saeyslab/FlowSOM_workshop

  

  svgassen

  committedJul 2, 2019
  927701e

• Updating the FlowSOM workshop package for an upcoming workshop in Geneva

  

  svgassen

  committedJul 2, 2019
  454ad8b

Commits on Sep 19, 2018

• Moved the vignettes to another folder

  Helena-todd

  committedSep 19, 2018
  66e415e

• Update

  

  svgassen

  committedSep 19, 2018
  9d219d6

• Commented out the line generating an error

  Helena-todd

  committedSep 19, 2018
  ba98b4e

• changed name of cell_labels

  Helena-todd

  committedSep 19, 2018
  3edd340

• Merge branch 'master' of https://github.com/saeyslab/FlowSOM_workshop

  Helena-todd

  committedSep 19, 2018
  2e453c1

• Functions updates

  Helena-todd

  committedSep 19, 2018
  e15ea4d

• building vignettes

  Helena-todd

  committedSep 19, 2018
  2ee507f

• renumbered exercises

  

  svgassen

  committedSep 19, 2018
  991e224

• Fix typos etc

  

  svgassen

  committedSep 19, 2018
  df06dd1

Commits on Sep 18, 2018

• Merge branch 'master' of https://github.com/saeyslab/FlowSOM_workshop

  

  svgassen

  committedSep 18, 2018
  c38952d

• Add FlowSOM example code

  

  svgassen

  committedSep 18, 2018
  cec2641

• installation file

  Helena-todd

  committedSep 18, 2018
  d426888

• Added solutions to exercises

  Helena-todd

  committedSep 18, 2018
  c87790b

• improved the png layout and subsampled the number of cells so the png is not too long to generate

  Helena-todd

  committedSep 18, 2018
  99adb24

• PlotSNE_marker is now directly plotting instead of returning a ggplot object

  Helena-todd

  committedSep 18, 2018
  6c8736d

• Merge branch 'master' of https://github.com/saeyslab/FlowSOM_workshop

  Helena-todd

  committedSep 18, 2018
  206c8a4

• tsne vignette

  Helena-todd

  committedSep 18, 2018
  1077cff

• New functions to plot tsne results colored by a marker or manual gating

  Helena-todd

  committedSep 18, 2018
  95ec949

• Made 2 of the notebooks into vignettes.

  

  svgassen

  committedSep 18, 2018
  4684f78

Commits on Sep 17, 2018

• New exercises in the quality control markdown

  Helena-todd

  committedSep 17, 2018
  e869780

• Added functions in the quality control markdown

  Helena-todd

  committedSep 17, 2018
  195399a

• changed the order of the plotted parameters

  Helena-todd

  committedSep 17, 2018
  fbd6623

• changed the coloring in plot_aggregate

  Helena-todd

  committedSep 17, 2018
  0f68ffe

• Added an aggregate plot function and exercises to the flowsom vignette

  

  svgassen

  committedSep 17, 2018
  e88e128

Commits on Sep 13, 2018

• Added documentation

  

  svgassen

  committedSep 13, 2018
  4f3bc40

• Added code to make 1 vector describing the manual gating. Currently only tested for running on one file.

  

  svgassen

  committedSep 13, 2018
  94e90f7

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