diff --git a/recipes/abricate/0.4/meta.yaml b/recipes/abricate/0.4/meta.yaml index 533173b49b484..0799e65a6dccf 100644 --- a/recipes/abricate/0.4/meta.yaml +++ b/recipes/abricate/0.4/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.4" build: - number: 0 + number: 1 source: fn: abricate_v0.4.tar.gz @@ -12,18 +12,18 @@ source: requirements: build: - - gcc # [linux] - - llvm # [osx] - - zlib + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [linux] - - perl - - perl-bioperl >=1.6.924 - - perl-file-slurp - - perl-text-csv - - perl-list-moreutils - - blast >=2.2.30 - - zlib + - libgcc # [linux] + - perl + - perl-bioperl >=1.6.924 + - perl-file-slurp + - perl-text-csv + - perl-list-moreutils + - blast >=2.2.30 + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/abricate/0.5/meta.yaml b/recipes/abricate/0.5/meta.yaml index 5c315dab5a024..ab423c47575f4 100644 --- a/recipes/abricate/0.5/meta.yaml +++ b/recipes/abricate/0.5/meta.yaml @@ -1,9 +1,9 @@ package: name: abricate version: "0.5" - + build: - number: 0 + number: 1 source: fn: abricate_v0.5.tar.gz @@ -11,25 +11,25 @@ source: md5: 9d2b54511190c3beb6e018675c4d4d0e requirements: - build: - - gcc # [linux] - - llvm # [osx] - - zlib + build: + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [linux] - - perl - - perl-bioperl >=1.6.924 - - perl-file-slurp - - perl-text-csv - - perl-list-moreutils - - perl-file-spec - - perl-json - - perl-lwp-simple - - perl-findbin - - blast >=2.2.30 - - zlib - - unzip - - emboss + - libgcc # [linux] + - perl + - perl-bioperl >=1.6.924 + - perl-file-slurp + - perl-text-csv + - perl-list-moreutils + - perl-file-spec + - perl-json + - perl-lwp-simple + - perl-findbin + - blast >=2.2.30 + - zlib {{CONDA_ZLIB}}* + - unzip + - emboss test: commands: @@ -42,4 +42,3 @@ about: license: GPL2 license_file: LICENSE summary: Mass screening of contigs for antibiotic resistance genes - diff --git a/recipes/abricate/meta.yaml b/recipes/abricate/meta.yaml index f994677714f47..a1b7fa6b789f0 100644 --- a/recipes/abricate/meta.yaml +++ b/recipes/abricate/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.7" build: - number: 0 + number: 1 source: fn: abricate_v0.7.tar.gz @@ -12,35 +12,35 @@ source: requirements: build: - - gcc # [linux] - - llvm # [osx] - - zlib - - perl - - perl-bioperl >=1.6.924 - - perl-file-slurp - - perl-text-csv - - perl-list-moreutils - - perl-file-spec - - perl-json - - perl-lwp-simple - - perl-findbin - - blast >=2.6 + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* + - perl + - perl-bioperl >=1.6.924 + - perl-file-slurp + - perl-text-csv + - perl-list-moreutils + - perl-file-spec + - perl-json + - perl-lwp-simple + - perl-findbin + - blast >=2.6 run: - - libgcc # [linux] - - perl - - perl-bioperl >=1.6.924 - - perl-file-slurp - - perl-text-csv - - perl-list-moreutils - - perl-file-spec - - perl-json - - perl-lwp-simple - - perl-findbin - - blast >=2.6 - - zlib - - unzip - - emboss - - entrez-direct + - libgcc # [linux] + - perl + - perl-bioperl >=1.6.924 + - perl-file-slurp + - perl-text-csv + - perl-list-moreutils + - perl-file-spec + - perl-json + - perl-lwp-simple + - perl-findbin + - blast >=2.6 + - zlib {{CONDA_ZLIB}}* + - unzip + - emboss + - entrez-direct test: commands: diff --git a/recipes/addrg/meta.yaml b/recipes/addrg/meta.yaml index 2c4b4f9e72a75..09a1c81ed29da 100644 --- a/recipes/addrg/meta.yaml +++ b/recipes/addrg/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: False source: @@ -17,10 +17,10 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - htslib >=1.0.0 + - htslib {{ CONDA_HTSLIB }}* run: - libgcc # [not osx] - - htslib >=1.0.0 + - htslib {{ CONDA_HTSLIB }}* about: home: https://github.com/holtgrewe/addrg diff --git a/recipes/agg/meta.yaml b/recipes/agg/meta.yaml index 94bb2fd6c3417..b3a6dcb9e80c5 100644 --- a/recipes/agg/meta.yaml +++ b/recipes/agg/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,12 +15,12 @@ source: requirements: build: - - gcc - - zlib + - gcc + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/alfred/0.1.2/meta.yaml b/recipes/alfred/0.1.2/meta.yaml index c2d6e27a40729..6f204c87b28bc 100644 --- a/recipes/alfred/0.1.2/meta.yaml +++ b/recipes/alfred/0.1.2/meta.yaml @@ -11,7 +11,7 @@ source: - Makefile.patch build: - number: 1 + number: 2 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/alfred/0.1.3/meta.yaml b/recipes/alfred/0.1.3/meta.yaml index 5e89f7d1916f1..56fc289703084 100644 --- a/recipes/alfred/0.1.3/meta.yaml +++ b/recipes/alfred/0.1.3/meta.yaml @@ -11,7 +11,7 @@ source: - Makefile.patch build: - number: 1 + number: 2 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/alfred/meta.yaml b/recipes/alfred/meta.yaml index 04dc98423b0d5..c42c7d87bcab0 100644 --- a/recipes/alfred/meta.yaml +++ b/recipes/alfred/meta.yaml @@ -11,7 +11,7 @@ source: - Makefile.patch build: - number: 1 + number: 2 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/align-it/1.0.3/meta.yaml b/recipes/align-it/1.0.3/meta.yaml index b99e690e6e52a..c28620caaec68 100644 --- a/recipes/align-it/1.0.3/meta.yaml +++ b/recipes/align-it/1.0.3/meta.yaml @@ -4,7 +4,7 @@ about: summary: "Align-it is a tool to align molecules according to their pharmacophores. A pharmacophore is an abstract concept based on the specific interactions observed in drug-receptor interactions: hydrogen bonding, charge transfer, electrostatic and hydrophobic interactions." build: - number: 3 + number: 4 skip: True # [osx] package: @@ -16,12 +16,12 @@ requirements: - gcc # [linux] - llvm # [osx] - openbabel ==2.4.1 - - zlib + - zlib {{CONDA_ZLIB}}* - cmake run: - openbabel ==2.4.1 - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: align-it-1.0.3.tar.gz diff --git a/recipes/allegro/meta.yaml b/recipes/allegro/meta.yaml index 2a628ed5e554d..829bb3446ee24 100644 --- a/recipes/allegro/meta.yaml +++ b/recipes/allegro/meta.yaml @@ -1,6 +1,6 @@ package: name: allegro - version: 2 + version: 3 source: fn: allegro2-2017-10-11.tar.gz @@ -17,8 +17,7 @@ source: build: - number: 0 - #skip: True # [osx] + number: 1 requirements: build: diff --git a/recipes/angsd/meta.yaml b/recipes/angsd/meta.yaml index ee347ff74dd32..4c878b3e02a51 100644 --- a/recipes/angsd/meta.yaml +++ b/recipes/angsd/meta.yaml @@ -1,7 +1,7 @@ {% set version = "0.910" %} build: - number: 0 + number: 1 skip: True # [osx] about: @@ -15,12 +15,12 @@ package: requirements: build: - - htslib + - htslib {{ CONDA_HTSLIB }}* - gcc # [not osx] - llvm # [osx] run: - libgcc # [not osx] - - htslib + - htslib {{ CONDA_HTSLIB }}* test: commands: diff --git a/recipes/aria2/meta.yaml b/recipes/aria2/meta.yaml index 05f2b39beb67a..600a5cc543b6c 100644 --- a/recipes/aria2/meta.yaml +++ b/recipes/aria2/meta.yaml @@ -8,14 +8,14 @@ source: md5: 0a28844c8db660d6a20d8a34ae4b0f37 build: - number: 0 + number: 1 requirements: build: - gcc # [linux] - llvm # [osx] - pkg-config # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - openssl # [linux] - sqlite - libssh2 @@ -24,7 +24,7 @@ requirements: run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - openssl # [linux] - sqlite - libssh2 diff --git a/recipes/ariba/meta.yaml b/recipes/ariba/meta.yaml index 9c18fd8f8bcb8..63f91c20dd60f 100644 --- a/recipes/ariba/meta.yaml +++ b/recipes/ariba/meta.yaml @@ -11,7 +11,7 @@ source: build: skip: True # [py27] - number: 0 + number: 1 requirements: build: @@ -24,7 +24,7 @@ requirements: - pysam >=0.9.1 - pymummer >=0.10.2 - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - python @@ -41,7 +41,7 @@ requirements: - mummer >=3.23 - spades >=3.5.0 - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/asn2gb/meta.yaml b/recipes/asn2gb/meta.yaml index 1e41eb035a0c3..9f8e6970db668 100644 --- a/recipes/asn2gb/meta.yaml +++ b/recipes/asn2gb/meta.yaml @@ -16,7 +16,7 @@ source: sha256: 4b6ac3831061bc8f8c8adb011fe58c8741402a9c21c95af395aa98154c9ab775 # [linux] build: - number: 0 + number: 1 requirements: run: diff --git a/recipes/assemblyutility/meta.yaml b/recipes/assemblyutility/meta.yaml index acaee9e8189b1..cc2a500bb9eae 100644 --- a/recipes/assemblyutility/meta.yaml +++ b/recipes/assemblyutility/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -17,11 +17,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/augustus/meta.yaml b/recipes/augustus/meta.yaml index 99da19f5e096a..1017f3e750c7c 100644 --- a/recipes/augustus/meta.yaml +++ b/recipes/augustus/meta.yaml @@ -17,7 +17,7 @@ source: - patches/compileSpliceCands.Makefile.patch build: - number: 2 + number: 3 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/bam-readcount/meta.yaml b/recipes/bam-readcount/meta.yaml index 6ec4f7f9cc640..3f5a4b03ad1a1 100644 --- a/recipes/bam-readcount/meta.yaml +++ b/recipes/bam-readcount/meta.yaml @@ -8,14 +8,14 @@ source: md5: 58d72588866f16f658ce4f40a3809af9 build: - number: 1 + number: 2 requirements: build: - cmake >=2.8.3 - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - perl - python @@ -23,7 +23,7 @@ requirements: run: - python - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - perl diff --git a/recipes/bambamc/meta.yaml b/recipes/bambamc/meta.yaml index b1de9a2121134..c810d4d9699c8 100644 --- a/recipes/bambamc/meta.yaml +++ b/recipes/bambamc/meta.yaml @@ -8,17 +8,17 @@ source: md5: 4de1f030fab1de54387f68e4fbd2cd35 build: - number: 0 + number: 1 requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bamhash/1.0/meta.yaml b/recipes/bamhash/1.0/meta.yaml index a4944c27cd0f1..f71ce05a0488c 100644 --- a/recipes/bamhash/1.0/meta.yaml +++ b/recipes/bamhash/1.0/meta.yaml @@ -7,16 +7,19 @@ source: url: https://github.com/DecodeGenetics/BamHash/archive/v1.0.tar.gz sha256: af1c939901afe8666ba300c66e9538d79bb48b5e9dd665f4bf575376d288189e +build: + number: 1 + requirements: build: - gcc # [linux] - openssl - - zlib + - zlib {{CONDA_ZLIB}}* run: - openssl - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bamhash/1.1/meta.yaml b/recipes/bamhash/1.1/meta.yaml index 8fe144b20bfc1..c81f1f3dc1c03 100644 --- a/recipes/bamhash/1.1/meta.yaml +++ b/recipes/bamhash/1.1/meta.yaml @@ -6,16 +6,19 @@ source: url: https://github.com/DecodeGenetics/BamHash/archive/1c987784929f5c6cf28b9d36d00017380b922c71.tar.gz sha256: c1598f71c3662e199bd4853884082eecdd7f69099a3514476aee3485bb0c298c +build: + number: 1 + requirements: build: - gcc # [linux] - openssl - - zlib + - zlib {{CONDA_ZLIB}}* run: - openssl - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bamm/meta.yaml b/recipes/bamm/meta.yaml index fd9d2b731a64e..60995020b0c70 100644 --- a/recipes/bamm/meta.yaml +++ b/recipes/bamm/meta.yaml @@ -9,8 +9,8 @@ source: build: - number: 2 - skip: True # [osx] + number: 3 + skip: True [osx or py3k] extra: skip-lints: @@ -20,11 +20,11 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - htslib 1.3.1 + - htslib {{ CONDA_HTSLIB }}* - cython - - python >=2.7,<3 + - python - setuptools - - zlib + - zlib {{CONDA_ZLIB}}* - automake 1.15 - autoconf - libtool @@ -32,9 +32,9 @@ requirements: run: - libgcc # [linux] - - python >=2.7,<3 - - htslib 1.3.1 - - zlib + - python + - htslib {{ CONDA_HTSLIB }}* + - zlib {{CONDA_ZLIB}}* - numpy - samtools ==1.3.1 - bwa ==0.7.12 @@ -51,8 +51,8 @@ test: commands: - bamm --help - nosetests - + about: home: https://github.com/Ecogenomics/BamM license: LGPL-3.0 - summary: "Metagenomics-focused BAM file manipulation" \ No newline at end of file + summary: "Metagenomics-focused BAM file manipulation" diff --git a/recipes/bamtools/2.3.0/meta.yaml b/recipes/bamtools/2.3.0/meta.yaml index d8da826dc2aa3..c51f3ecb1cc8d 100644 --- a/recipes/bamtools/2.3.0/meta.yaml +++ b/recipes/bamtools/2.3.0/meta.yaml @@ -12,16 +12,16 @@ source: - bamtools_lib.diff build: - number: 0 + number: 1 requirements: build: - gcc # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/bamtools/meta.yaml b/recipes/bamtools/meta.yaml index 8d7821d10e5a5..97fdbc92aa56a 100644 --- a/recipes/bamtools/meta.yaml +++ b/recipes/bamtools/meta.yaml @@ -14,7 +14,7 @@ source: - bamtools_lib.diff build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/bcbio-nextgen/meta.yaml b/recipes/bcbio-nextgen/meta.yaml index c6a802de3a766..c02490f6f7be0 100644 --- a/recipes/bcbio-nextgen/meta.yaml +++ b/recipes/bcbio-nextgen/meta.yaml @@ -3,7 +3,7 @@ package: version: '1.0.8a' build: - number: 3 + number: 4 skip: True # [not py27] source: @@ -20,7 +20,7 @@ requirements: - pip run: - python - - argparse [py26] + - argparse # [py26] - arrow - azure - beautifulsoup4 diff --git a/recipes/bcftools-snvphyl-plugin/meta.yaml b/recipes/bcftools-snvphyl-plugin/meta.yaml index 6d071d0d67382..93bf3a213e6b5 100644 --- a/recipes/bcftools-snvphyl-plugin/meta.yaml +++ b/recipes/bcftools-snvphyl-plugin/meta.yaml @@ -6,26 +6,28 @@ about: of microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin build: - number: 0 + number: 1 skip: True # [osx] + package: name: bcftools-snvphyl-plugin version: {{ version }} + requirements: build: - gcc # [not osx] - llvm # [osx] - - bzip2 + - bzip2 {{CONDA_BZIP2}}* - curl - - xz - - zlib + - xz {{CONDA_XZ}}* + - zlib {{CONDA_ZLIB}}* run: - bcftools {{ version }} - libgcc # [not osx] - - bzip2 + - bzip2 {{CONDA_BZIP2}}* - curl - - xz - - zlib + - xz {{CONDA_XZ}}* + - zlib {{CONDA_ZLIB}}* source: fn: bcftools-{{ version }}.tar.bz2 diff --git a/recipes/bcftools/1.3.1/meta.yaml b/recipes/bcftools/1.3.1/meta.yaml index aad63086e8de5..104085c4a4dab 100644 --- a/recipes/bcftools/1.3.1/meta.yaml +++ b/recipes/bcftools/1.3.1/meta.yaml @@ -8,15 +8,18 @@ about: streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. build: - number: 1 + number: 2 package: name: bcftools version: '1.3.1' requirements: build: - - zlib ==1.2.8 + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - zlib ==1.2.8 + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* source: fn: bcftools-1.3.1.tar.bz2 sha256: 12c37a4054cbf1980223e2b3a80a7fdb3fd850324a4ba6832e38fdba91f1b924 diff --git a/recipes/bcftools/1.3/meta.yaml b/recipes/bcftools/1.3/meta.yaml index 0e24341829794..0609904ce11bb 100644 --- a/recipes/bcftools/1.3/meta.yaml +++ b/recipes/bcftools/1.3/meta.yaml @@ -1,3 +1,29 @@ +source: + fn: bcftools-1.3.tar.bz2 + sha256: fc5332e49546d55120551b0d5fb690f79e4f2216b8492c7b53033cdaa4256a3d + url: https://github.com/samtools/bcftools/releases/download/1.3/bcftools-1.3.tar.bz2 + +test: + commands: + - "bcftools -h > /dev/null" + - bcftools --version + +build: + number: 1 + +package: + name: bcftools + version: '1.3' + +requirements: + build: + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* + run: + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* + about: home: https://github.com/samtools/bcftools license: MIT @@ -7,21 +33,4 @@ about: accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations. -build: - number: 0 -package: - name: bcftools - version: '1.3' -requirements: - build: - - zlib ==1.2.8 - run: - - zlib ==1.2.8 -source: - fn: bcftools-1.3.tar.bz2 - sha256: fc5332e49546d55120551b0d5fb690f79e4f2216b8492c7b53033cdaa4256a3d - url: https://github.com/samtools/bcftools/releases/download/1.3/bcftools-1.3.tar.bz2 -test: - commands: - - "bcftools -h > /dev/null" - - bcftools --version + diff --git a/recipes/bcftools/meta.yaml b/recipes/bcftools/meta.yaml index 6e1744304802d..b3c9a85be4cc0 100644 --- a/recipes/bcftools/meta.yaml +++ b/recipes/bcftools/meta.yaml @@ -10,27 +10,27 @@ about: VCF and BCF and streams will work in most, but not all situations. build: - number: 0 + number: 1 package: name: bcftools version: {{ version }} requirements: build: - - gcc # [not osx] - - llvm # [osx] - - bzip2 - - curl - - xz - - zlib + - gcc # [not osx] + - llvm # [osx] + - bzip2 {{CONDA_BZIP2}}* + - curl + - xz {{CONDA_XZ}}* + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - bzip2 - - curl - # Currently removed due to size and dependency issues - #- matplotlib # for plot-vcfstats - #- texlive-core # for plot-vcfstats - - xz - - zlib + - libgcc # [not osx] + - bzip2 {{CONDA_BZIP2}}* + - curl + # Currently removed due to size and dependency issues + #- matplotlib # for plot-vcfstats + #- texlive-core # for plot-vcfstats + - xz {{CONDA_XZ}}* + - zlib {{CONDA_ZLIB}}* source: fn: bcftools-{{ version }}.tar.bz2 diff --git a/recipes/bedtools/2.16.2/meta.yaml b/recipes/bedtools/2.16.2/meta.yaml index dea1d0692ce5d..2253387859a52 100644 --- a/recipes/bedtools/2.16.2/meta.yaml +++ b/recipes/bedtools/2.16.2/meta.yaml @@ -9,16 +9,16 @@ source: - makefile.patch build: - number: 0 + number: 1 requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bedtools/2.17.0/meta.yaml b/recipes/bedtools/2.17.0/meta.yaml index 07d02c788ab8a..45bdc6a90143c 100644 --- a/recipes/bedtools/2.17.0/meta.yaml +++ b/recipes/bedtools/2.17.0/meta.yaml @@ -9,16 +9,16 @@ source: - makefile.patch build: - number: 0 + number: 1 requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bedtools/2.25/meta.yaml b/recipes/bedtools/2.25/meta.yaml index 81c4fcf24b9b2..5c7b5e7a7ca36 100644 --- a/recipes/bedtools/2.25/meta.yaml +++ b/recipes/bedtools/2.25/meta.yaml @@ -8,16 +8,16 @@ source: sha256: d737ca42e7df76c5455d3e6e0562cdcb62336830eaad290fd4133a328a1ddacc build: - number: 2 + number: 3 requirements: build: - - gcc # [linux] - - llvm # [osx] - - zlib + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - zlib - - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* + - libgcc # [linux] test: commands: diff --git a/recipes/bedtools/2.26.0/meta.yaml b/recipes/bedtools/2.26.0/meta.yaml index 7a8156664e6dc..afce12506e295 100644 --- a/recipes/bedtools/2.26.0/meta.yaml +++ b/recipes/bedtools/2.26.0/meta.yaml @@ -10,16 +10,16 @@ source: - 2.26.0_postrelease.patch build: - number: 0 + number: 1 requirements: build: - - gcc # [linux] - - llvm # [osx] - - zlib + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - zlib - - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* + - libgcc # [linux] test: commands: diff --git a/recipes/bedtools/2.27.0/meta.yaml b/recipes/bedtools/2.27.0/meta.yaml index 7ee16bc62753a..54da2db7f919b 100644 --- a/recipes/bedtools/2.27.0/meta.yaml +++ b/recipes/bedtools/2.27.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: e4f0e5616d04ba5ac09c36dec989b1236a5712e67d0b6874ff5e144d7ed4ce60 build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/bedtools/2.27.1/meta.yaml b/recipes/bedtools/2.27.1/meta.yaml index 846cbad283ae6..5c0ea8190c74f 100644 --- a/recipes/bedtools/2.27.1/meta.yaml +++ b/recipes/bedtools/2.27.1/meta.yaml @@ -11,7 +11,7 @@ source: sha256: c8c2acbaf3f9cb92dcf8e5cd59af6b31ae9c4598efb786ba6c84f66ca72fafd9 build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/bfc/meta.yaml b/recipes/bfc/meta.yaml index 8fe7e582157d1..f9c0528c69547 100644 --- a/recipes/bfc/meta.yaml +++ b/recipes/bfc/meta.yaml @@ -3,7 +3,7 @@ package: version: "r181" build: - number: 1 + number: 2 source: fn: bfc_r181.tar.gz @@ -14,11 +14,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bgt/meta.yaml b/recipes/bgt/meta.yaml index 7685db71320ba..6aebaf3239193 100644 --- a/recipes/bgt/meta.yaml +++ b/recipes/bgt/meta.yaml @@ -14,11 +14,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bioawk/meta.yaml b/recipes/bioawk/meta.yaml index 5d49752e620c4..ec0e1a4326025 100644 --- a/recipes/bioawk/meta.yaml +++ b/recipes/bioawk/meta.yaml @@ -8,18 +8,18 @@ source: sha256: 5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5 build: - number: 1 + number: 2 requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - bison - m4 run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bioconductor-ncdfflow/meta.yaml b/recipes/bioconductor-ncdfflow/meta.yaml index 6020dc0627a17..241fb7577d294 100644 --- a/recipes/bioconductor-ncdfflow/meta.yaml +++ b/recipes/bioconductor-ncdfflow/meta.yaml @@ -12,7 +12,7 @@ source: - 'https://depot.galaxyproject.org/software/{{ name }}/{{ name }}_{{ version }}_src_all.tar.gz' sha256: 68017eb7a8f9f7b0eb88ce28eaf70d874615bfcba009560650e7e3d5bea378e7 build: - number: 0 + number: 1 rpaths: - lib/R/lib/ - lib/ @@ -27,7 +27,7 @@ requirements: - r-base - r-bh - r-rcpparmadillo - - hdf5 + - hdf5 {{CONDA_HDF5}}* run: - bioconductor-biobase - bioconductor-biocgenerics @@ -38,7 +38,7 @@ requirements: - r-base - r-bh - r-rcpparmadillo - - hdf5 + - hdf5 {{CONDA_HDF5}}* test: commands: - '$R -e "library(''{{ name }}'')"' diff --git a/recipes/biolite-tools/meta.yaml b/recipes/biolite-tools/meta.yaml index 96c5084614959..a7cdcd9a4fd91 100644 --- a/recipes/biolite-tools/meta.yaml +++ b/recipes/biolite-tools/meta.yaml @@ -9,6 +9,9 @@ source: url: https://bitbucket.org/caseywdunn/biolite/downloads/biolite-tools-{{ version }}.tar.gz sha256: b2e08caa65d1bf0914a910fa2e90fa5757d0e2ddd0f2e4ec41dbd5682dab3093 +build: + number: 1 + requirements: build: - zlib {{ CONDA_ZLIB }}* diff --git a/recipes/blasr_libcpp/meta.yaml b/recipes/blasr_libcpp/meta.yaml index d5030bf5ddacd..b4bc8337f3e72 100644 --- a/recipes/blasr_libcpp/meta.yaml +++ b/recipes/blasr_libcpp/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [not py27 or osx] string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} @@ -18,15 +18,15 @@ requirements: build: - llvm # [osx] - gcc # [linux] - - hdf5 + - hdf5 {{ CONDA_HDF5 }}* - python - - htslib + - htslib {{ CONDA_HTSLIB }}* - pbbam - boost {{CONDA_BOOST}}* run: - libgcc # [linux] - - hdf5 + - hdf5 {{ CONDA_HDF5 }}* - boost {{CONDA_BOOST}}* test: @@ -42,4 +42,3 @@ about: home: https://github.com/PacificBiosciences/{{ name }} license: BSD-3-Clause-Clear summary: Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences - diff --git a/recipes/blast/meta.yaml b/recipes/blast/meta.yaml index 361f2f1b005a0..71d3d1c4c3eae 100644 --- a/recipes/blast/meta.yaml +++ b/recipes/blast/meta.yaml @@ -13,7 +13,7 @@ source: - boost_106400.patch build: - number: 1 + number: 2 string: boost{{ CONDA_BOOST }}_{{ PKG_BUILDNUM }} requirements: diff --git a/recipes/blat/meta.yaml b/recipes/blat/meta.yaml index 551de3b962f0d..9b748ee7c35c3 100644 --- a/recipes/blat/meta.yaml +++ b/recipes/blat/meta.yaml @@ -8,15 +8,15 @@ source: md5: 16e546b8843b85e0b0f2fa603cd78724 build: - number: 1 + number: 2 requirements: build: - libpng - - zlib + - zlib {{CONDA_ZLIB}}* run: - libpng - - zlib + - zlib {{CONDA_ZLIB}}* about: home: https://genome.ucsc.edu/FAQ/FAQblat.html license: Free for academic, nonprofit and personal use diff --git a/recipes/breakdancer/meta.yaml b/recipes/breakdancer/meta.yaml index 1df7147f2c530..57a4e91055d4d 100644 --- a/recipes/breakdancer/meta.yaml +++ b/recipes/breakdancer/meta.yaml @@ -11,7 +11,7 @@ about: summary: SV detection from paired end reads mapping build: - number: 1 + number: 2 skip: True # [not py27] requirements: @@ -43,5 +43,5 @@ source: - builddeps.patch # This patch is applied during the build via builddeps.patch. # The reason is that samtools is a tarball within the breakdancer tarball and - # needs to be extracted first. + # needs to be extracted first. #- samtools.patch diff --git a/recipes/breseq/meta.yaml b/recipes/breseq/meta.yaml index bdf69bae1e96c..33d039cdee06b 100644 --- a/recipes/breseq/meta.yaml +++ b/recipes/breseq/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,15 +15,15 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib - - r-base - - bowtie2 >=2.0.0,!=2.0.3,!=2.0.4,!=2.3.1 + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* + - r-base + - bowtie2 >=2.0.0,!=2.0.3,!=2.0.4,!=2.3.1 test: commands: diff --git a/recipes/bwa/0.5.9/meta.yaml b/recipes/bwa/0.5.9/meta.yaml index 7a54bb554de49..1babb7f628756 100644 --- a/recipes/bwa/0.5.9/meta.yaml +++ b/recipes/bwa/0.5.9/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.5.9" build: - number: 0 + number: 1 source: fn: bwa-0.5.9.tar.bz2 @@ -13,10 +13,10 @@ source: requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* about: home: http://bio-bwa.sourceforge.net diff --git a/recipes/bwa/0.6.2/meta.yaml b/recipes/bwa/0.6.2/meta.yaml index 9217d013fb69e..e226f74f13e5d 100644 --- a/recipes/bwa/0.6.2/meta.yaml +++ b/recipes/bwa/0.6.2/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.6.2" build: - number: 0 + number: 1 source: fn: bwa-0.6.2.tar.bz2 @@ -12,11 +12,12 @@ source: requirements: build: - - gcc - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{ CONDA_ZLIB }}* run: - - libgcc - - zlib + - libgcc # [not osx] + - zlib {{ CONDA_ZLIB }}* about: home: http://bio-bwa.sourceforge.net diff --git a/recipes/bwa/0.7.3a/meta.yaml b/recipes/bwa/0.7.3a/meta.yaml index efca6714612dd..8b2c2459be2bb 100644 --- a/recipes/bwa/0.7.3a/meta.yaml +++ b/recipes/bwa/0.7.3a/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.7.3a" build: - number: 0 + number: 1 source: fn: bwa-0.7.3a.tar.bz2 @@ -12,11 +12,12 @@ source: requirements: build: - - gcc - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/bwa/0.7.8/meta.yaml b/recipes/bwa/0.7.8/meta.yaml index 67fdd0ea5d476..fb92e688e4022 100644 --- a/recipes/bwa/0.7.8/meta.yaml +++ b/recipes/bwa/0.7.8/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.7.8" build: - number: 0 + number: 1 source: fn: bwa-0.7.8.tar.bz2 @@ -12,11 +12,12 @@ source: requirements: build: - - gcc - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* about: home: http://bio-bwa.sourceforge.net diff --git a/recipes/bwa/meta.yaml b/recipes/bwa/meta.yaml index f8071094e8fa2..c357a4b4923b8 100644 --- a/recipes/bwa/meta.yaml +++ b/recipes/bwa/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 980b9591b61c60042c4a39b9e31ccaad8d17ff179d44d347997825da3fdf47fd build: - number: 1 + number: 2 requirements: build: diff --git a/recipes/cancerit-allelecount/meta.yaml b/recipes/cancerit-allelecount/meta.yaml index 28dde5885e231..6f4901a533560 100644 --- a/recipes/cancerit-allelecount/meta.yaml +++ b/recipes/cancerit-allelecount/meta.yaml @@ -5,15 +5,15 @@ source: fn: alleleCount-v2.1.2.tar.gz url: https://github.com/cancerit/alleleCount/archive/v2.1.2.tar.gz build: - number: 1 + number: 2 skip: True # [osx] requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: - 'alleleCounter -h' diff --git a/recipes/cansam/meta.yaml b/recipes/cansam/meta.yaml index a2dadc2dff3e3..943c9fcde17c5 100644 --- a/recipes/cansam/meta.yaml +++ b/recipes/cansam/meta.yaml @@ -9,16 +9,19 @@ source: patches: - makefile.patch +build: + number: 1 + requirements: build: - gcc - boost {{CONDA_BOOST}}* - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - boost {{CONDA_BOOST}}* - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/cassiopee/meta.yaml b/recipes/cassiopee/meta.yaml index d0081314c5fbb..e59175bb88835 100644 --- a/recipes/cassiopee/meta.yaml +++ b/recipes/cassiopee/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.0.5" build: - number: 0 + number: 1 source: fn: 1.0.5.tar.gz diff --git a/recipes/cdbtools/meta.yaml b/recipes/cdbtools/meta.yaml index ede82c10c1868..e41c83fd47d2d 100644 --- a/recipes/cdbtools/meta.yaml +++ b/recipes/cdbtools/meta.yaml @@ -11,16 +11,16 @@ source: - zlib.patch build: - number: 1 + number: 2 skip: True # [not linux64 or osx] requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [linux] - llvm # [osx] run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/centrifuge/meta.yaml b/recipes/centrifuge/meta.yaml index f8e48abb9a1e5..5f068922d176d 100644 --- a/recipes/centrifuge/meta.yaml +++ b/recipes/centrifuge/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -17,13 +17,13 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl - python run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl - python diff --git a/recipes/cgat-scripts/meta.yaml b/recipes/cgat-scripts/meta.yaml index d071e0e2eb54b..7bf019f84deba 100644 --- a/recipes/cgat-scripts/meta.yaml +++ b/recipes/cgat-scripts/meta.yaml @@ -10,7 +10,7 @@ source: build: skip: True # [not py3k] - number: 0 + number: 1 entry_points: - cgat = CGAT.cgat:main @@ -43,7 +43,7 @@ requirements: - ucsc-bedgraphtobigwig 357 - ucsc-bedtobigbed 357 - ucsc-wigtobigwig 357 - - zlib 1.2.* + - zlib {{CONDA_ZLIB}}* run: # python dependencies @@ -72,7 +72,7 @@ requirements: - ucsc-bedgraphtobigwig 357 - ucsc-bedtobigbed 357 - ucsc-wigtobigwig 357 - - zlib 1.2.* + - zlib {{CONDA_ZLIB}}* test: diff --git a/recipes/clever-toolkit/meta.yaml b/recipes/clever-toolkit/meta.yaml index d0af48876af4e..b1b4b6f25cca0 100644 --- a/recipes/clever-toolkit/meta.yaml +++ b/recipes/clever-toolkit/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 3 + number: 4 string: py{{CONDA_PY}}_boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx or py2k] @@ -19,12 +19,12 @@ requirements: - gcc - boost {{CONDA_BOOST}}* - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - python - boost {{CONDA_BOOST}}* - - zlib + - zlib {{CONDA_ZLIB}}* - bedtools 2.26.* - samtools 1.* - bcftools 1.* diff --git a/recipes/cmv/meta.yaml b/recipes/cmv/meta.yaml index d676f8b7b2dd7..ba91ed63b98bd 100644 --- a/recipes/cmv/meta.yaml +++ b/recipes/cmv/meta.yaml @@ -12,7 +12,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -21,7 +21,7 @@ requirements: - gmp >=5.0.1,<7 - cairo - pango - - zlib + - zlib {{CONDA_ZLIB}}* - perl - xorg-libxrender - xorg-libsm @@ -32,7 +32,7 @@ requirements: - libgcc - cairo - pango - - zlib + - zlib {{CONDA_ZLIB}}* - xorg-libxrender - xorg-libsm - xorg-libxext diff --git a/recipes/cogent/meta.yaml b/recipes/cogent/meta.yaml index 59d07571ae47f..e66878280db63 100644 --- a/recipes/cogent/meta.yaml +++ b/recipes/cogent/meta.yaml @@ -8,14 +8,14 @@ source: md5: ecdfa0bc89e0c04c9d4d39cac9984498 build: - number: 0 + number: 1 skip: True [py3k or osx] requirements: build: - python - numpy >=1.3 - - zlib + - zlib {{CONDA_ZLIB}}* - matplotlib >=1.1.0 - mpi4py >=1.0 # [not osx] - mysql-python >=1.2.2 # [not osx] @@ -24,7 +24,7 @@ requirements: run: - python - numpy >=1.3 - - zlib + - zlib {{CONDA_ZLIB}}* - matplotlib >=1.1.0 - mpi4py >=1.0 # [not osx] - mysql-python >=1.2.2 # [not osx] diff --git a/recipes/collectl/meta.yaml b/recipes/collectl/meta.yaml index 80a7569c45c2a..655a7462fbdb6 100644 --- a/recipes/collectl/meta.yaml +++ b/recipes/collectl/meta.yaml @@ -9,15 +9,15 @@ source: - usrenvbin.patch build: - number: 1 + number: 2 requirements: build: - perl-threaded - - zlib + - zlib {{CONDA_ZLIB}}* run: - perl-threaded - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/cooler/meta.yaml b/recipes/cooler/meta.yaml index 71c49fc98602b..63183240a20ef 100644 --- a/recipes/cooler/meta.yaml +++ b/recipes/cooler/meta.yaml @@ -10,7 +10,7 @@ source: md5: 4f09de27e1070a86cc7f522b452e6c03 build: - number: 0 + number: 1 entry_points: - cooler = cooler.cli:cli @@ -18,9 +18,10 @@ requirements: build: - python - setuptools + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - hdf5 - python - six diff --git a/recipes/cyvcf2/0.7.2/meta.yaml b/recipes/cyvcf2/0.7.2/meta.yaml index 0fa1ed1d17693..d41cf6ae75d26 100644 --- a/recipes/cyvcf2/0.7.2/meta.yaml +++ b/recipes/cyvcf2/0.7.2/meta.yaml @@ -11,7 +11,7 @@ source: md5: bd42bb44534db93b52ee2e97836abb6c build: - number: 0 + number: 1 requirements: build: @@ -20,7 +20,7 @@ requirements: - cython - numpy - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - cython run: @@ -30,7 +30,7 @@ requirements: - seaborn - pandas - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/cyvcf2/meta.yaml b/recipes/cyvcf2/meta.yaml index 3a781e804aa77..44029d90bc43c 100644 --- a/recipes/cyvcf2/meta.yaml +++ b/recipes/cyvcf2/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ sha256hash }} build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/dazz_db/meta.yaml b/recipes/dazz_db/meta.yaml index 18394d09cd478..1c223d34ab0cd 100644 --- a/recipes/dazz_db/meta.yaml +++ b/recipes/dazz_db/meta.yaml @@ -3,13 +3,13 @@ package: version: "1.0p2" build: - number: 0 + number: 1 + source: fn: dazz_db_V1.0p2.tar.gz sha256: 3e98d10454b12bf0bcba1cdec226882e8214a3040472cbfaec0f9b589099d730 url: https://github.com/thegenemyers/DAZZ_DB/archive/8ab7daf27123a3dfd17189af168ebe22b343170f.tar.gz - requirements: build: - gcc # [not osx] diff --git a/recipes/dbg2olc/meta.yaml b/recipes/dbg2olc/meta.yaml index 4cbc7875f7e9b..0ffc1fc85fe8f 100644 --- a/recipes/dbg2olc/meta.yaml +++ b/recipes/dbg2olc/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 script: "mkdir -p $PREFIX/bin; g++ -O3 -o DBG2OLC *.cpp; mv DBG2OLC $PREFIX/bin" source: @@ -16,16 +16,16 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib - - sparseassembler - - sparc - - assemblyutility + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* + - sparseassembler + - sparc + - assemblyutility test: commands: diff --git a/recipes/dcmtk/meta.yaml b/recipes/dcmtk/meta.yaml index f527d9319105b..8f8c6495e060d 100644 --- a/recipes/dcmtk/meta.yaml +++ b/recipes/dcmtk/meta.yaml @@ -11,7 +11,7 @@ source: sha1: 9daa6b64767443a60d5cb8946905e4e7003d1658 build: - number: 4 + number: 5 requirements: build: @@ -21,7 +21,7 @@ requirements: - libpng - libtiff - libxml2 - - zlib + - zlib {{CONDA_ZLIB}}* - jpeg run: - openssl @@ -29,7 +29,7 @@ requirements: - libtiff - jpeg - libxml2 - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/debwt/meta.yaml b/recipes/debwt/meta.yaml index 93b2171a7ee14..8611ee866bc00 100644 --- a/recipes/debwt/meta.yaml +++ b/recipes/debwt/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.0.1" build: - number: 0 + number: 1 source: git_url: https://github.com/DixianZhu/deBWT.git @@ -12,10 +12,10 @@ source: requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/deepvariant/meta.yaml b/recipes/deepvariant/meta.yaml index b757decf9957d..95f3b372bb2f6 100644 --- a/recipes/deepvariant/meta.yaml +++ b/recipes/deepvariant/meta.yaml @@ -19,14 +19,14 @@ source: md5: 0e3e34e4f5cbfb6d0f3007656a6a2632 build: - number: 0 + number: 1 skip: true # [osx or not py27] requirements: build: - python - unzip - - zip + - zlib {{CONDA_ZLIB}}* - curl # Needed for non-binary build # - google-cloud-sdk @@ -52,7 +52,7 @@ requirements: - six - crcmod - parallel - + test: commands: # Pre-built binaries need GLIBC 2.16 and 2.23 (htslib) so fail diff --git a/recipes/delly/meta.yaml b/recipes/delly/meta.yaml index 70db1753637d7..cdfbd8333ac4a 100644 --- a/recipes/delly/meta.yaml +++ b/recipes/delly/meta.yaml @@ -11,7 +11,7 @@ source: - Makefile.patch build: - number: 0 + number: 1 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/denovogear/meta.yaml b/recipes/denovogear/meta.yaml index 85c17da323e2e..2ab7b39ef3a16 100644 --- a/recipes/denovogear/meta.yaml +++ b/recipes/denovogear/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.1.1" build: - number: 0 + number: 1 skip: True # [osx] string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} @@ -14,19 +14,19 @@ source: requirements: build: - - cmake - - gcc - - boost {{CONDA_BOOST}}* - - eigen - - zlib - - htslib + - cmake + - gcc + - boost {{CONDA_BOOST}}* + - eigen + - zlib {{CONDA_ZLIB}}* + - htslib {{CONDA_HTSLIB}}* run: - - libgcc - - boost {{CONDA_BOOST}}* - - eigen - - zlib - - htslib + - libgcc + - boost {{CONDA_BOOST}}* + - eigen + - zlib {{CONDA_ZLIB}}* + - htslib {{CONDA_HTSLIB}}* test: commands: diff --git a/recipes/detonate/meta.yaml b/recipes/detonate/meta.yaml index 355ec458204c6..13a07f7dd27ff 100644 --- a/recipes/detonate/meta.yaml +++ b/recipes/detonate/meta.yaml @@ -17,7 +17,7 @@ source: # - rsem-eval.Makefile.patch build: - number: 1 + number: 2 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} package: diff --git a/recipes/diamond/0.8.26/meta.yaml b/recipes/diamond/0.8.26/meta.yaml index 0f8ee0198a590..e9492528294d4 100644 --- a/recipes/diamond/0.8.26/meta.yaml +++ b/recipes/diamond/0.8.26/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.27/meta.yaml b/recipes/diamond/0.8.27/meta.yaml index cd76b5dd470b9..0356e5ef002e8 100644 --- a/recipes/diamond/0.8.27/meta.yaml +++ b/recipes/diamond/0.8.27/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.28/meta.yaml b/recipes/diamond/0.8.28/meta.yaml index f8ccc92fc688b..857e3535ca5ba 100644 --- a/recipes/diamond/0.8.28/meta.yaml +++ b/recipes/diamond/0.8.28/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.29/meta.yaml b/recipes/diamond/0.8.29/meta.yaml index 2c26114336ebe..5ca6e0974ac9f 100644 --- a/recipes/diamond/0.8.29/meta.yaml +++ b/recipes/diamond/0.8.29/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.30/meta.yaml b/recipes/diamond/0.8.30/meta.yaml index 1d5ecc725ae73..7cb2e6ea50ecd 100644 --- a/recipes/diamond/0.8.30/meta.yaml +++ b/recipes/diamond/0.8.30/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.31/meta.yaml b/recipes/diamond/0.8.31/meta.yaml index 6c206013d09de..f88d277871d96 100644 --- a/recipes/diamond/0.8.31/meta.yaml +++ b/recipes/diamond/0.8.31/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.8.36/meta.yaml b/recipes/diamond/0.8.36/meta.yaml index b955b510f5a84..9d87d63a9283e 100644 --- a/recipes/diamond/0.8.36/meta.yaml +++ b/recipes/diamond/0.8.36/meta.yaml @@ -11,7 +11,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: False # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/0.9.10/meta.yaml b/recipes/diamond/0.9.10/meta.yaml index 8e43fd12fedf9..118322cac939e 100644 --- a/recipes/diamond/0.9.10/meta.yaml +++ b/recipes/diamond/0.9.10/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: False requirements: @@ -20,10 +20,10 @@ requirements: - gcc # [unix] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [unix] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/diamond/meta.yaml b/recipes/diamond/meta.yaml index 27b46b481699d..7ed3a363e5c35 100644 --- a/recipes/diamond/meta.yaml +++ b/recipes/diamond/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: False requirements: diff --git a/recipes/disco/1.0/meta.yaml b/recipes/disco/1.0/meta.yaml index eaca7a7e22bc0..4712c5283d5d3 100644 --- a/recipes/disco/1.0/meta.yaml +++ b/recipes/disco/1.0/meta.yaml @@ -12,19 +12,18 @@ source: md5: {{ md5 }} build: - number: 0 - skip: False + number: 1 requirements: build: - gcc - openmpi >=1.8 - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - openmpi >=1.8 - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/disco/1.2/meta.yaml b/recipes/disco/1.2/meta.yaml index b45bfc669d9ec..166a532b71fee 100644 --- a/recipes/disco/1.2/meta.yaml +++ b/recipes/disco/1.2/meta.yaml @@ -12,8 +12,7 @@ source: md5: {{ md5 }} build: - number: 0 - skip: False + number: 1 requirements: build: diff --git a/recipes/discosnp/meta.yaml b/recipes/discosnp/meta.yaml index 7ce3abb8c7a8c..92e70796a59a5 100644 --- a/recipes/discosnp/meta.yaml +++ b/recipes/discosnp/meta.yaml @@ -8,7 +8,7 @@ source: md5: "dfc35f6f5b83e7f661f5acbcb3c03bad" build: - number: 4 + number: 5 requirements: build: diff --git a/recipes/discovar-denovo/meta.yaml b/recipes/discovar-denovo/meta.yaml index 5cb14edea528a..55ce74ddb9a08 100644 --- a/recipes/discovar-denovo/meta.yaml +++ b/recipes/discovar-denovo/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'Suitable for de novo assembly of large and small genomes.' build: - number: 0 + number: 1 skip: True # [osx] package: @@ -15,11 +15,11 @@ requirements: build: - gcc - jemalloc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - jemalloc - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: discovardenovo-52488.tar.gz diff --git a/recipes/disty/meta.yaml b/recipes/disty/meta.yaml index 14a4be0b0d40e..f99ad2fa035d4 100644 --- a/recipes/disty/meta.yaml +++ b/recipes/disty/meta.yaml @@ -11,17 +11,17 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib ==1.2.8 + - zlib {{CONDA_ZLIB}}* - libgcc # [not osx] run: - - zlib ==1.2.8 + - zlib {{CONDA_ZLIB}}* - libgcc # [not osx] test: diff --git a/recipes/dsk/meta.yaml b/recipes/dsk/meta.yaml index 580a8b05e328f..1c4268324e5a6 100644 --- a/recipes/dsk/meta.yaml +++ b/recipes/dsk/meta.yaml @@ -10,19 +10,19 @@ source: - install_paths.patch build: - number: 0 + number: 1 requirements: build: - cmake - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - cppunit run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/dsrc/meta.yaml b/recipes/dsrc/meta.yaml index 30516ca651bf8..05e5c098cc82d 100644 --- a/recipes/dsrc/meta.yaml +++ b/recipes/dsrc/meta.yaml @@ -8,18 +8,18 @@ source: build: skip: True # [osx] - number: 1 + number: 2 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - boost {{CONDA_BOOST}}* # [linux] run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - boost {{CONDA_BOOST}}* # [linux] # dsrc -h returns an error so we need some data to test. diff --git a/recipes/dwgsim/meta.yaml b/recipes/dwgsim/meta.yaml index 08a820df5143c..7ac8828d94771 100644 --- a/recipes/dwgsim/meta.yaml +++ b/recipes/dwgsim/meta.yaml @@ -5,7 +5,7 @@ about: summary: 'Whole Genome Simulator for Next-Generation Sequencing' build: - number: 3 + number: 4 package: name: dwgsim @@ -15,11 +15,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses test: diff --git a/recipes/ecopcr/meta.yaml b/recipes/ecopcr/meta.yaml index b323333f5f4cc..7d6f55c61f090 100644 --- a/recipes/ecopcr/meta.yaml +++ b/recipes/ecopcr/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [not py27] source: @@ -17,15 +17,15 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - python - - libgcc [not osx] - - zlib - - reportlab + - python + - libgcc [not osx] + - zlib {{CONDA_ZLIB}}* + - reportlab test: commands: diff --git a/recipes/ecoprimers/meta.yaml b/recipes/ecoprimers/meta.yaml index fcb5939298060..09d4084dccc96 100644 --- a/recipes/ecoprimers/meta.yaml +++ b/recipes/ecoprimers/meta.yaml @@ -6,23 +6,21 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz url: https://git.metabarcoding.org/obitools/ecoprimers/uploads/37c37c8d4dd62f53d66dae7a7f7b2318/ecoPrimers.tar.gz md5: 4c6bcb67f622fdf7dc8b9cc4860d1520 - requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib - + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc [not osx] - - zlib + - libgcc [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: @@ -32,4 +30,3 @@ about: home: https://git.metabarcoding.org/obitools/ecoprimers/wikis/home license: CeCill v2 summary: ecoPrimers is a software that finds primers from a set of sequence. - diff --git a/recipes/embassy-phylip/meta.yaml b/recipes/embassy-phylip/meta.yaml index 3843f6bf5792e..faefc1f2f3167 100644 --- a/recipes/embassy-phylip/meta.yaml +++ b/recipes/embassy-phylip/meta.yaml @@ -3,7 +3,7 @@ package: version: "3.69.650" build: - number: 0 + number: 1 source: fn: PHYLIPNEW-3.69.650.tar.gz @@ -15,10 +15,10 @@ requirements: - gcc # [linux] - llvm # [osx] - python - - zlib + - zlib {{CONDA_ZLIB}}* - emboss run: - - zlib + - zlib {{CONDA_ZLIB}}* - emboss about: diff --git a/recipes/emboss/meta.yaml b/recipes/emboss/meta.yaml index 968f76e017585..5edbc5fa65d5f 100644 --- a/recipes/emboss/meta.yaml +++ b/recipes/emboss/meta.yaml @@ -3,7 +3,7 @@ package: version: "6.5.7" build: - number: 2 + number: 3 source: fn: EMBOSS-6.5.7.tar.gz @@ -12,21 +12,21 @@ source: requirements: build: - - gcc # [linux] - - llvm # [osx] - - python - - zlib + - gcc # [linux] + - llvm # [osx] + - python + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* about: home: http://emboss.open-bio.org/ license: GPL - summary: The European Molecular Biology Open Software Suite + summary: The European Molecular Biology Open Software Suite test: commands: - # test a few tools + # test a few tools - needle --help - transeq --help - sixpack --help diff --git a/recipes/emirge/meta.yaml b/recipes/emirge/meta.yaml index a5b439e40b8d6..a543fc4c53353 100644 --- a/recipes/emirge/meta.yaml +++ b/recipes/emirge/meta.yaml @@ -12,14 +12,14 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: True # [ py3k ] script: python setup.py install --single-version-externally-managed --record record.txt requirements: build: - cython - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [linux] - llvm # [osx] - python @@ -27,7 +27,7 @@ requirements: - numpy run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] - python - numpy diff --git a/recipes/ensembl-vep/meta.yaml b/recipes/ensembl-vep/meta.yaml index 4d114c3115dec..bcc03796ebc73 100644 --- a/recipes/ensembl-vep/meta.yaml +++ b/recipes/ensembl-vep/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 2f8708128d2539c6e313343838ed226b178dfa879e6ec921fe08b9a78228ca57 build: - number: 0 + number: 1 skip: True # [osx] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" diff --git a/recipes/eqtlbma/meta.yaml b/recipes/eqtlbma/meta.yaml index af0cbd3ecdbc7..d8d1c1fab0bb1 100644 --- a/recipes/eqtlbma/meta.yaml +++ b/recipes/eqtlbma/meta.yaml @@ -10,7 +10,7 @@ source: - utils_script.patch build: - number: 1 + number: 2 requirements: build: @@ -18,14 +18,14 @@ requirements: - autoconf 2.69 pl5.* - automake 1.15 pl5.* - libtool - - gsl >=1.15,<2.0 - - zlib + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* - texinfo run: - libgcc - - gsl >=1.15,<2.0 - - zlib + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* - r-base - r-mass - bioconductor-genomicranges diff --git a/recipes/erne/meta.yaml b/recipes/erne/meta.yaml index e591eb6f7cb2e..a0d4e4208ebe0 100644 --- a/recipes/erne/meta.yaml +++ b/recipes/erne/meta.yaml @@ -13,7 +13,7 @@ source: - osxfixes.patch # [osx] build: - number: 0 + number: 1 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} # [linux] requirements: @@ -24,16 +24,16 @@ requirements: - libcxx # [osx] - boost ==1.63.0 # [osx] - boost {{CONDA_BOOST}}* # [linux] - - zlib - - bzip2 + - zlib {{CONDA_ZLIB}}* + - bzip2 {{CONDA_BZIP2}}* run: - libgcc # [linux] - libcxx # [osx] - boost {{CONDA_BOOST}}* # [linux] - boost ==1.63.0 # [osx] - - zlib - - bzip2 + - zlib {{CONDA_ZLIB}}* + - bzip2 {{CONDA_BZIP2}}* test: commands: diff --git a/recipes/extractpirs/meta.yaml b/recipes/extractpirs/meta.yaml index 266a7b0f5712a..b16e043aeb678 100644 --- a/recipes/extractpirs/meta.yaml +++ b/recipes/extractpirs/meta.yaml @@ -8,15 +8,17 @@ source: md5: de81232195f6e2eeed17a3ac028a02b6 build: - number: 0 + number: 1 skip: True # [osx] requirements: build: - - libgcc + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - zlib - - libgcc + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* about: home: https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html diff --git a/recipes/fasta3/meta.yaml b/recipes/fasta3/meta.yaml index 6c6a141764a92..5a4512c423d5a 100644 --- a/recipes/fasta3/meta.yaml +++ b/recipes/fasta3/meta.yaml @@ -14,7 +14,7 @@ source: - libpath.patch build: - number: 1 + number: 2 skip: True # [osx] requirements: diff --git a/recipes/fastool/meta.yaml b/recipes/fastool/meta.yaml index d734dd97f66e9..6aa5f668b48c9 100644 --- a/recipes/fastool/meta.yaml +++ b/recipes/fastool/meta.yaml @@ -8,15 +8,15 @@ source: sha256: f86f02fced9479b77d6d27a442b66e66f0c55d40d5ad2ddd91a752de57024540 build: - number: 1 + number: 2 requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/fastp/meta.yaml b/recipes/fastp/meta.yaml index d81c330681020..7b98570d8aaef 100644 --- a/recipes/fastp/meta.yaml +++ b/recipes/fastp/meta.yaml @@ -9,7 +9,7 @@ source: md5: 399b62c276abd27ae6165d1d4a36b6ba build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/fastq_tools/meta.yaml b/recipes/fastq_tools/meta.yaml index cfb21827c467b..b27de341f166b 100644 --- a/recipes/fastq_tools/meta.yaml +++ b/recipes/fastq_tools/meta.yaml @@ -9,7 +9,7 @@ source: md5: 8d6f3d5e26ac3fd6f07543fdf572404c build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/fermi/meta.yaml b/recipes/fermi/meta.yaml index 7a59f492c6907..3108d2a4fcf7e 100644 --- a/recipes/fermi/meta.yaml +++ b/recipes/fermi/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.1_r751_beta" build: - number: 1 + number: 2 source: fn: fermi_1.1-r751-beta.tar.gz @@ -12,14 +12,14 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - perl-threaded - - zlib + - libgcc # [not osx] + - perl + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/fermi2/meta.yaml b/recipes/fermi2/meta.yaml index 2526c5737ccba..e68661b3a147f 100644 --- a/recipes/fermi2/meta.yaml +++ b/recipes/fermi2/meta.yaml @@ -3,7 +3,7 @@ package: version: "r193" build: - number: 0 + number: 1 source: fn: fermi2_r193.tar.gz @@ -14,14 +14,14 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - bfc - ropebwt2 - perl - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/fermikit/meta.yaml b/recipes/fermikit/meta.yaml index 6f4deee590db4..65533fd03245a 100644 --- a/recipes/fermikit/meta.yaml +++ b/recipes/fermikit/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.14.dev1" build: - number: 0 + number: 1 source: fn: fermikit-0.14.dev1.tar.bz2 @@ -12,22 +12,22 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - perl # For shasum checking - - zlib + - gcc # [not osx] + - llvm # [osx] + - perl # For shasum checking + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - perl - - zlib - - bfc ==r181 - - bwa ==0.7.15 - - fermi2 ==r193 - - htsbox ==r327 - - ropebwt2 ==r187 - - seqtk ==r82 - - trimadap ==r10 + - libgcc # [not osx] + - perl + - zlib {{CONDA_ZLIB}}* + - bfc ==r181 + - bwa ==0.7.15 + - fermi2 ==r193 + - htsbox ==r327 + - ropebwt2 ==r187 + - seqtk ==r82 + - trimadap ==r10 test: source_files: diff --git a/recipes/filtlong/meta.yaml b/recipes/filtlong/meta.yaml index 024cc4aa1d0e7..44b3b906488d0 100644 --- a/recipes/filtlong/meta.yaml +++ b/recipes/filtlong/meta.yaml @@ -12,16 +12,16 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/flexbar/2.5.0/meta.yaml b/recipes/flexbar/2.5.0/meta.yaml index f85b19f1fe508..a95aea95c236e 100644 --- a/recipes/flexbar/2.5.0/meta.yaml +++ b/recipes/flexbar/2.5.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: "{{ sha256 }}" build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -21,13 +21,13 @@ requirements: - cmake - tbb - seqan-library ==1.4.2 - - bzip2 + - bzip2 {{CONDA_BZIP2}}* - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - tbb - seqan-library ==1.4.2 - - bzip2 + - bzip2 {{CONDA_BZIP2}}* - zlib {{CONDA_ZLIB}}* test: diff --git a/recipes/fqtools/meta.yaml b/recipes/fqtools/meta.yaml index aaea3ba3a8cf6..599d9b66b9461 100644 --- a/recipes/fqtools/meta.yaml +++ b/recipes/fqtools/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -18,12 +18,12 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib - - htslib + - zlib {{CONDA_ZLIB}}* + - htslib {{ CONDA_HTSLIB }}* run: - libgcc # [not osx] - - zlib - - htslib + - zlib {{CONDA_ZLIB}}* + - htslib {{ CONDA_HTSLIB }}* test: commands: diff --git a/recipes/freebayes/meta.yaml b/recipes/freebayes/meta.yaml index 3102b4994057e..6b4138b4419b5 100644 --- a/recipes/freebayes/meta.yaml +++ b/recipes/freebayes/meta.yaml @@ -9,7 +9,7 @@ source: - qcfail.diff build: - number: 2 + number: 3 skip: true # [osx] string: "htslib{{ CONDA_HTSLIB }}_{{ PKG_BUILDNUM }}" @@ -28,7 +28,7 @@ requirements: - libgcc # [not osx] - htslib {{ CONDA_HTSLIB }}* - parallel - + test: commands: - freebayes --version diff --git a/recipes/fusion-inspector/meta.yaml b/recipes/fusion-inspector/meta.yaml index 3cd7089351cb2..3f896477d4874 100644 --- a/recipes/fusion-inspector/meta.yaml +++ b/recipes/fusion-inspector/meta.yaml @@ -1,6 +1,6 @@ {% set name = "fusion-inspector" %} {% set version = "1.1.0" %} -{% set build = "1" %} +{% set build = "2" %} package: name: {{ name }} diff --git a/recipes/fwdpp/0.5.3/meta.yaml b/recipes/fwdpp/0.5.3/meta.yaml index 33c1c6917f117..2922a425ba8bf 100644 --- a/recipes/fwdpp/0.5.3/meta.yaml +++ b/recipes/fwdpp/0.5.3/meta.yaml @@ -14,19 +14,22 @@ requirements: #to get the examples/unit tests #compiled. - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* - libsequence - boost >=1.60.0 build: - number: 0 + number: 1 + package: name: fwdpp version: '0.5.3' + test: commands: - fwdppConfig --version | grep 0.5.3 > /dev/null + source: fn: 0.5.3.tar.gz url: http://github.com/molpopgen/fwdpp/archive/0.5.3.tar.gz diff --git a/recipes/fwdpp/0.5.4/meta.yaml b/recipes/fwdpp/0.5.4/meta.yaml index d91338cd70734..0c57133c6ead0 100644 --- a/recipes/fwdpp/0.5.4/meta.yaml +++ b/recipes/fwdpp/0.5.4/meta.yaml @@ -14,19 +14,22 @@ requirements: #to get the examples/unit tests #compiled. - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* - libsequence - boost >=1.60.0 build: - number: 2 + number: 3 + package: name: fwdpp version: '0.5.4' + test: commands: - fwdppConfig --version | grep 0.5.4 > /dev/null + source: fn: 0.5.4.tar.gz url: http://github.com/molpopgen/fwdpp/archive/0.5.4.tar.gz diff --git a/recipes/fwdpp/meta.yaml b/recipes/fwdpp/meta.yaml index dce3d15e8fe07..c6a2e1591bfef 100644 --- a/recipes/fwdpp/meta.yaml +++ b/recipes/fwdpp/meta.yaml @@ -8,7 +8,7 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* - boost >=1.60.0 @@ -17,13 +17,16 @@ requirements: - libgcc # [not osx] build: - number: 0 + number: 1 + package: name: fwdpp version: '0.5.7' + test: commands: - fwdppConfig --version | grep 0.5.7 > /dev/null + source: fn: 0.5.7.tar.gz url: http://github.com/molpopgen/fwdpp/archive/0.5.7.tar.gz diff --git a/recipes/gap2seq/2.0/meta.yaml b/recipes/gap2seq/2.0/meta.yaml index cb76065747fbf..e3c31779f1351 100644 --- a/recipes/gap2seq/2.0/meta.yaml +++ b/recipes/gap2seq/2.0/meta.yaml @@ -3,7 +3,7 @@ package: version: "2.0" build: - number: 6 + number: 7 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} source: @@ -24,7 +24,7 @@ requirements: - libcxx # [osx] - boost ==1.63.0 # [osx] # general build - - zlib + - zlib {{CONDA_ZLIB}}* - cmake - make run: @@ -35,7 +35,7 @@ requirements: - libcxx # [osx] - boost ==1.63.0 # [osx] # general run - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: - GapMerger 2>&1 | grep "USAGE for" > /dev/null diff --git a/recipes/gap2seq/meta.yaml b/recipes/gap2seq/meta.yaml index 1331a734b662d..e565456f77b0b 100644 --- a/recipes/gap2seq/meta.yaml +++ b/recipes/gap2seq/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 2 + number: 3 string: boost{{CONDA_BOOST}}_zlib{{CONDA_ZLIB}}_{{PKG_BUILDNUM}} source: diff --git a/recipes/gat/meta.yaml b/recipes/gat/meta.yaml index 29558c0bac8aa..c055fddcb22cc 100644 --- a/recipes/gat/meta.yaml +++ b/recipes/gat/meta.yaml @@ -9,12 +9,12 @@ source: md5: c0271d7235eddfdc912afa1ee4b7d278 build: - number: 0 + number: 1 requirements: build: - python - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [not osx] - llvm # [osx] - setuptools >=1.1 @@ -25,7 +25,7 @@ requirements: run: - python - - zlib + - zlib {{CONDA_ZLIB}}* - cython >=0.19 - numpy >=1.7 - scipy >=0.11 diff --git a/recipes/gdc-client/meta.yaml b/recipes/gdc-client/meta.yaml index 291b8ce1d764a..cf35b5fa55229 100644 --- a/recipes/gdc-client/meta.yaml +++ b/recipes/gdc-client/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: true # [py3k] source: diff --git a/recipes/genblastg/meta.yaml b/recipes/genblastg/meta.yaml index d351595cbe0e7..6eb8838d5f3d0 100644 --- a/recipes/genblastg/meta.yaml +++ b/recipes/genblastg/meta.yaml @@ -6,7 +6,7 @@ about: produced by local sequence alignment programs such as BLAST and WU-BLAST and identify groups of HSPs.' build: - number: 0 + number: 1 package: name: genblastg @@ -14,18 +14,18 @@ package: requirements: build: - - gcc # [linux] - - llvm # [osx] - - zlib + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [linux] - - zlib - - blast + - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* + - blast source: fn: genblast_v138.zip url: http://genome.sfu.ca/genblast/latest/genblast_v139.zip test: - commands: - - genblastG + commands: + - genblastG diff --git a/recipes/genehunter/3.0/meta.yaml b/recipes/genehunter/3.0/meta.yaml index 66c7e46e28e22..4510275ef2610 100644 --- a/recipes/genehunter/3.0/meta.yaml +++ b/recipes/genehunter/3.0/meta.yaml @@ -5,16 +5,10 @@ package: source: fn: ghm-3.0.tgz url: https://www.helmholtz-muenchen.de/fileadmin/GENEPI/downloads/ghm-3.0.tar.gz - md5: cd7400bbab7f5460fd45b300f57ba659 - # - # TODO: OSX - # - #patches: - # - osx-makefile.patch # [osx] - + md5: cd7400bbab7f5460fd45b300f57ba659 build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -25,6 +19,7 @@ requirements: run: - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/genehunter/3.1/meta.yaml b/recipes/genehunter/3.1/meta.yaml index d41562567fa04..c6d9fe8269d1f 100644 --- a/recipes/genehunter/3.1/meta.yaml +++ b/recipes/genehunter/3.1/meta.yaml @@ -6,15 +6,9 @@ source: fn: ghm-3.1.tgz url: https://www.helmholtz-muenchen.de/fileadmin/GENEPI/downloads/ghm-3.1.tgz md5: 0cfdc1aa80e7501f4766fa9537f96897 - # - # TODO: OSX - # - #patches: - # - osx-makefile.patch # [osx] - build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -25,7 +19,7 @@ requirements: run: - libgcc # [linux] - + - zlib {{CONDA_ZLIB}}* test: commands: - echo "q" | ghm diff --git a/recipes/gmap/2014.12.23/meta.yaml b/recipes/gmap/2014.12.23/meta.yaml index 1bfaec81893d9..6d28cdcf341eb 100644 --- a/recipes/gmap/2014.12.23/meta.yaml +++ b/recipes/gmap/2014.12.23/meta.yaml @@ -8,16 +8,16 @@ source: requirements: build: - perl - - zlib + - zlib {{CONDA_ZLIB}}* run: - perl - - zlib + - zlib {{CONDA_ZLIB}}* about: home: http://research-pub.gene.com/gmap/ license: Non-commercial summary: Genomic mapping and alignment program for mRNA and EST sequences build: - number: 3 + number: 4 skip: True # [osx] binary_has_prefix_files: - bin/atoiindex diff --git a/recipes/gmap/2017.05.08/meta.yaml b/recipes/gmap/2017.05.08/meta.yaml index ebf3f48fbab77..d8a56d5f87d63 100644 --- a/recipes/gmap/2017.05.08/meta.yaml +++ b/recipes/gmap/2017.05.08/meta.yaml @@ -10,19 +10,19 @@ requirements: - gcc # [linux] - llvm # [osx] - perl - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 run: - libgcc # [linux] - perl - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 about: home: http://research-pub.gene.com/gmap/ license: Non-commercial summary: Genomic mapping and alignment program for mRNA and EST sequences build: - number: 0 + number: 1 binary_has_prefix_files: - bin/atoiindex - bin/cmetindex diff --git a/recipes/gmap/2017.09.30/meta.yaml b/recipes/gmap/2017.09.30/meta.yaml index f6837b5a201ab..5ff1ca4576667 100644 --- a/recipes/gmap/2017.09.30/meta.yaml +++ b/recipes/gmap/2017.09.30/meta.yaml @@ -10,19 +10,19 @@ requirements: - gcc # [linux] - llvm # [osx] - perl - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 run: - libgcc # [linux] - perl - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 about: home: http://research-pub.gene.com/gmap/ license: Non-commercial summary: Genomic mapping and alignment program for mRNA and EST sequences build: - number: 0 + number: 1 binary_has_prefix_files: - bin/atoiindex - bin/cmetindex diff --git a/recipes/gmap/meta.yaml b/recipes/gmap/meta.yaml index 77cab7b9507c6..cd8ece74130c2 100644 --- a/recipes/gmap/meta.yaml +++ b/recipes/gmap/meta.yaml @@ -22,7 +22,7 @@ about: license: Non-commercial summary: Genomic mapping and alignment program for mRNA and EST sequences build: - number: 0 + number: 1 binary_has_prefix_files: - bin/atoiindex - bin/cmetindex diff --git a/recipes/gnu-wget/meta.yaml b/recipes/gnu-wget/meta.yaml index 3b0cf8229c538..9b683917336c5 100644 --- a/recipes/gnu-wget/meta.yaml +++ b/recipes/gnu-wget/meta.yaml @@ -8,7 +8,7 @@ source: md5: af9ca95a4bb8ac4a9bf10aeae66fa5ec build: - number: 2 + number: 3 requirements: build: @@ -17,14 +17,14 @@ requirements: # The configure script requires Python 3 for Wget's test suite. The recipe # does not run the tests, but the configure check cannot be turned off. - python >=3 - - zlib + - zlib {{CONDA_ZLIB}}* - openssl - pkg-config - pcre run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - openssl - pcre diff --git a/recipes/gqt/meta.yaml b/recipes/gqt/meta.yaml index 7691863b0a559..a2e57756e6ca5 100644 --- a/recipes/gqt/meta.yaml +++ b/recipes/gqt/meta.yaml @@ -13,7 +13,7 @@ source: - src-makefile.patch build: - number: 0 + number: 1 requirements: build: @@ -21,12 +21,12 @@ requirements: - llvm # [osx] - flex - sqlite - - htslib + - htslib {{ CONDA_HTSLIB }}* run: - libgcc # [not osx] - sqlite - - htslib + - htslib {{ CONDA_HTSLIB }}* test: commands: diff --git a/recipes/grabix/meta.yaml b/recipes/grabix/meta.yaml index 064c231d46e77..7b8f765097449 100644 --- a/recipes/grabix/meta.yaml +++ b/recipes/grabix/meta.yaml @@ -4,7 +4,7 @@ package: version: "0.1.8" build: - number: 2 + number: 3 skip: False source: diff --git a/recipes/graphmap/meta.yaml b/recipes/graphmap/meta.yaml index 69139bdf53c99..bbdd90bb2a434 100644 --- a/recipes/graphmap/meta.yaml +++ b/recipes/graphmap/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -21,11 +21,11 @@ requirements: build: - gnu-wget - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/graphprot/meta.yaml b/recipes/graphprot/meta.yaml index c66578dd43e0a..7722aae242b92 100644 --- a/recipes/graphprot/meta.yaml +++ b/recipes/graphprot/meta.yaml @@ -11,7 +11,7 @@ source: sha256: "{{ sha256 }}" build: - number: 1 + number: 2 skip: True # [osx] requirements: diff --git a/recipes/gubbins/meta.yaml b/recipes/gubbins/meta.yaml index 8519812d35a8d..c84f0df8ac0da 100644 --- a/recipes/gubbins/meta.yaml +++ b/recipes/gubbins/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [py27] source: diff --git a/recipes/gvcftools/meta.yaml b/recipes/gvcftools/meta.yaml index 50f4483233d80..48b7339924682 100644 --- a/recipes/gvcftools/meta.yaml +++ b/recipes/gvcftools/meta.yaml @@ -8,19 +8,19 @@ source: url: https://github.com/sequencing/gvcftools/releases/download/v0.17.0/gvcftools-0.17.0.tar.gz build: - number: 1 + number: 2 skip: True # [not linux] requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - perl - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/hap.py/meta.yaml b/recipes/hap.py/meta.yaml index 1f0216da86465..2242764a7015a 100644 --- a/recipes/hap.py/meta.yaml +++ b/recipes/hap.py/meta.yaml @@ -9,7 +9,7 @@ source: md5: 3052070d05dc08964e355c9da57f37ea build: - number: 0 + number: 1 skip: True # [not py27 or osx] requirements: @@ -17,7 +17,7 @@ requirements: - python - setuptools - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - cython - numpy - pandas @@ -31,7 +31,7 @@ requirements: - python - libgcc - cython - - zlib + - zlib {{CONDA_ZLIB}}* - numpy - pandas - pybedtools diff --git a/recipes/haploclique/1.3.1/meta.yaml b/recipes/haploclique/1.3.1/meta.yaml index 8870d5454b386..6eab5e5b52e17 100644 --- a/recipes/haploclique/1.3.1/meta.yaml +++ b/recipes/haploclique/1.3.1/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name }}-v{{ version }}.tar.bz2 diff --git a/recipes/hera/meta.yaml b/recipes/hera/meta.yaml index 45aad06c1604c..f3b68b2796576 100644 --- a/recipes/hera/meta.yaml +++ b/recipes/hera/meta.yaml @@ -15,31 +15,31 @@ source: - hera.makefile.patch build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* - jemalloc >=4.5.0 - - htslib - - hdf5 + - htslib {{CONDA_HDSLIB}}* + - hdf5 {{CONDA_HDF5}}* - libdivsufsort - - xz - - bzip2 + - xz {{CONDA_XZ}}* + - bzip2 {{CONDA_BZIP2}}* run: - python - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - jemalloc >=4.5.0 - - htslib - - hdf5 + - htslib {{CONDA_HDSLIB}}* + - hdf5 {{CONDA_HDF5}}* - libdivsufsort - - xz - - bzip2 + - xz {{CONDA_XZ}}* + - bzip2 {{CONDA_BZIP2}}* test: commands: diff --git a/recipes/hmmcopy/meta.yaml b/recipes/hmmcopy/meta.yaml index 27d80d018f7c9..f76e0695eef4d 100644 --- a/recipes/hmmcopy/meta.yaml +++ b/recipes/hmmcopy/meta.yaml @@ -1,12 +1,15 @@ package: name: hmmcopy version: 0.1.1 + source: fn: HMMcopy-0.1.1.zip url: http://compbio-bccrc.sites.olt.ubc.ca/files/2013/12/HMMcopy.zip md5: 205a719e7ac9b9f9ba811cdd7cbdae0a + build: - number: 0 + number: 1 + requirements: build: - gcc # [not osx] @@ -15,9 +18,11 @@ requirements: run: - libgcc # [not osx] - zlib {{CONDA_ZLIB}}* + test: commands: - readCounter -h + about: home: http://compbio.bccrc.ca/software/hmmcopy/ license: GPL-3 diff --git a/recipes/hts-nim-tools/meta.yaml b/recipes/hts-nim-tools/meta.yaml index e2f37157dc08c..b2780f32895c7 100644 --- a/recipes/hts-nim-tools/meta.yaml +++ b/recipes/hts-nim-tools/meta.yaml @@ -13,7 +13,7 @@ source: sha256: {{ sha256hash }} build: - number: 0 + number: 1 skip: True # [osx] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" diff --git a/recipes/htsbox/meta.yaml b/recipes/htsbox/meta.yaml index 6d2112bc03f1e..2f7cc79cd430d 100644 --- a/recipes/htsbox/meta.yaml +++ b/recipes/htsbox/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: htsbox_{{ version }}.tar.gz @@ -18,11 +18,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: @@ -32,4 +32,3 @@ about: home: https://github.com/lh3/htsbox license: Unknown summary: HTSbox is a fork of early HTSlib. It is a collection of small experimental tools manipulating HTS-related files. - diff --git a/recipes/imseq/meta.yaml b/recipes/imseq/meta.yaml index f3ee4244bd031..cafa2398ded8c 100644 --- a/recipes/imseq/meta.yaml +++ b/recipes/imseq/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [osx] source: @@ -19,11 +19,11 @@ source: requirements: build: - gcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - cmake run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* about: home: http://www.imtools.org/ diff --git a/recipes/iqtree/1.5.3/meta.yaml b/recipes/iqtree/1.5.3/meta.yaml index 5bff17fd02b40..55b5102114607 100644 --- a/recipes/iqtree/1.5.3/meta.yaml +++ b/recipes/iqtree/1.5.3/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,14 +15,14 @@ source: requirements: build: - - gcc - - cmake - - eigen - - zlib + - gcc + - cmake + - eigen + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/iqtree/meta.yaml b/recipes/iqtree/meta.yaml index 6e644557d67b9..486236247c50c 100644 --- a/recipes/iqtree/meta.yaml +++ b/recipes/iqtree/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,14 +15,14 @@ source: requirements: build: - - gcc - - cmake - - eigen - - zlib + - gcc + - cmake + - eigen + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/itk/4.6.1/meta.yaml b/recipes/itk/4.6.1/meta.yaml index ef764b6f34cdb..7b01644c728d4 100644 --- a/recipes/itk/4.6.1/meta.yaml +++ b/recipes/itk/4.6.1/meta.yaml @@ -11,7 +11,7 @@ source: md5: 2c84eae50ab2452cdad32aaadced3c37 build: - number: 0 + number: 1 requirements: build: @@ -21,11 +21,11 @@ requirements: - libtiff - libpng - jpeg - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - libtiff - libpng - jpeg diff --git a/recipes/itk/meta.yaml b/recipes/itk/meta.yaml index 8ceadfa52e2b1..61469fce7a696 100644 --- a/recipes/itk/meta.yaml +++ b/recipes/itk/meta.yaml @@ -11,7 +11,7 @@ source: md5: f7e7fb92ea3e11c78685c7977e0433d8 build: - number: 1 + number: 2 requirements: build: @@ -21,11 +21,11 @@ requirements: - libtiff - libpng - jpeg - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - libtiff - libpng - jpeg diff --git a/recipes/kallisto/meta.yaml b/recipes/kallisto/meta.yaml index c7df6e0a452f0..86124ef889a01 100644 --- a/recipes/kallisto/meta.yaml +++ b/recipes/kallisto/meta.yaml @@ -10,17 +10,17 @@ source: sha256: 2164938c2c61c04e338c4c132cf749f56d39e6f0b4c517121bca1fbc218e430e build: - number: 0 + number: 1 string: hdf5{{CONDA_HDF5}}_{{PKG_BUILDNUM}} requirements: build: - - hdf5 {{CONDA_HDF5}} + - hdf5 {{CONDA_HDF5}}* - cmake - zlib - gcc run: - - hdf5 {{CONDA_HDF5}} + - hdf5 {{CONDA_HDF5}}* - libgcc test: files: diff --git a/recipes/kat/2.3.4/meta.yaml b/recipes/kat/2.3.4/meta.yaml index d37144f858838..b5512efcc50d6 100644 --- a/recipes/kat/2.3.4/meta.yaml +++ b/recipes/kat/2.3.4/meta.yaml @@ -18,7 +18,7 @@ about: summary: 'KAT is a suite of tools that analyse jellyfish hashes or sequence files (fasta or fastq) using kmer counts' build: - number: 0 + number: 1 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [osx or py2k] @@ -28,7 +28,7 @@ requirements: - llvm # [osx] - libgcc # [not osx] - python - - zlib + - zlib {{CONDA_ZLIB}}* - autoconf - automake - libtool @@ -42,7 +42,7 @@ requirements: run: - python - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - boost {{CONDA_BOOST}}* - gnuplot - jellyfish diff --git a/recipes/kissplice/meta.yaml b/recipes/kissplice/meta.yaml index bdd4daaf9e206..ed65b451796e3 100644 --- a/recipes/kissplice/meta.yaml +++ b/recipes/kissplice/meta.yaml @@ -8,7 +8,7 @@ source: md5: "36ef9e22a0607f0ab4516cc0d4cf9fea" build: - number: 0 + number: 1 skip: True # [py3k] requirements: diff --git a/recipes/kmc/meta.yaml b/recipes/kmc/meta.yaml index 08f0303dd6e95..4be44737a1354 100644 --- a/recipes/kmc/meta.yaml +++ b/recipes/kmc/meta.yaml @@ -15,7 +15,7 @@ source: - 0004-kmc-no-libz-libbz2-static-link.patch build: - number: 0 + number: 1 # this recipe builds kmc without the asmlib speedup string: "noasmlib_{{ PKG_BUILDNUM }}" diff --git a/recipes/kmergenie/meta.yaml b/recipes/kmergenie/meta.yaml index f40ced35e2f67..597273291b1ea 100644 --- a/recipes/kmergenie/meta.yaml +++ b/recipes/kmergenie/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 skip: True # [not py27] source: @@ -20,12 +20,12 @@ requirements: - python - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{ CONDA_ZLIB }}* - r-base run: - python - libgcc # [linux] - - zlib + - zlib {{ CONDA_ZLIB }}* - r-base test: diff --git a/recipes/kraken-ea/meta.yaml b/recipes/kraken-ea/meta.yaml index d235001b1babf..03dd2bace8aa1 100644 --- a/recipes/kraken-ea/meta.yaml +++ b/recipes/kraken-ea/meta.yaml @@ -7,17 +7,17 @@ source: md5: 34dce0103874e199a13eeed9bf20bd73 build: - number: 1 + number: 2 skip: False requirements: build: - perl - - zlib + - zlib {{CONDA_ZLIB}}* - gcc run: - - zlib + - zlib {{CONDA_ZLIB}}* - jellyfish 1.1.11 - perl - libgcc diff --git a/recipes/leptonica/1.73/meta.yaml b/recipes/leptonica/1.73/meta.yaml index 92ad3b0bbb6f0..11b69115b18f5 100644 --- a/recipes/leptonica/1.73/meta.yaml +++ b/recipes/leptonica/1.73/meta.yaml @@ -2,7 +2,7 @@ package: name: leptonica version: 1.73 build: - number: 0 + number: 1 skip: True # [osx] source: fn: leptonica-1.73.tar.gz @@ -14,10 +14,10 @@ requirements: - jpeg - libpng - libtiff - - zlib + - zlib {{CONDA_ZLIB}}* - cmake run: - - zlib + - zlib {{CONDA_ZLIB}}* - jpeg - libpng - libtiff diff --git a/recipes/libbambamc/0.5.00/meta.yaml b/recipes/libbambamc/0.5.00/meta.yaml index 0dfe0a7bf05c4..3c6d2a42ce113 100644 --- a/recipes/libbambamc/0.5.00/meta.yaml +++ b/recipes/libbambamc/0.5.00/meta.yaml @@ -7,13 +7,16 @@ package: name: libbambamc version: 0.0.50 +build: + number: 1 + requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: 0.0.50-release-20140430085950.tar.gz diff --git a/recipes/libbigwig/meta.yaml b/recipes/libbigwig/meta.yaml index 3bd7f81d78f54..07e2a0a1525a3 100644 --- a/recipes/libbigwig/meta.yaml +++ b/recipes/libbigwig/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: libBigWig-{{ version }}.tar.gz diff --git a/recipes/libsequence/meta.yaml b/recipes/libsequence/meta.yaml index a3b6d41a8a087..0bc4933487f6e 100644 --- a/recipes/libsequence/meta.yaml +++ b/recipes/libsequence/meta.yaml @@ -1,32 +1,34 @@ -about: - home: 'https://www.github.com/molpopgen/libsequence' - license: "https://raw.githubusercontent.com/molpopgen/libsequence/master/LICENSE" - summary: "A C++ class library for evolutionary genetics (doi: 10.1093/bioinformatics/btg316)" + +package: + name: libsequence + version: '1.9.2' + +source: + fn: 1.9.2.tar.gz + url: http://github.com/molpopgen/libsequence/archive/1.9.2.tar.gz + md5: e9ac2e624ee5bf93483df01e62429530 + +build: + number: 1 + string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" + requirements: build: - - gcc + - gcc - zlib {{ CONDA_ZLIB }}* - tbb - htslib {{CONDA_HTSLIB}}* - run: + run: - libgcc - zlib {{ CONDA_ZLIB }}* - tbb - htslib {{CONDA_HTSLIB}}* -build: - number: 0 - string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" -package: - name: libsequence - version: '1.9.2' + test: commands: - libsequenceConfig --version | grep 1.9.2 > /dev/null + about: home: http://http://molpopgen.github.io/libsequence/ license: GNU Lesser General Public License v2 or later (LGPLv2+) summary: 'A C++ class library for evolutionary genetics.' -source: - fn: 1.9.2.tar.gz - url: http://github.com/molpopgen/libsequence/archive/1.9.2.tar.gz - md5: e9ac2e624ee5bf93483df01e62429530 diff --git a/recipes/lighter/meta.yaml b/recipes/lighter/meta.yaml index df4baeaf8b6b5..6a0785c9dd722 100644 --- a/recipes/lighter/meta.yaml +++ b/recipes/lighter/meta.yaml @@ -7,15 +7,15 @@ source: url: https://github.com/mourisl/Lighter/archive/v1.1.1.tar.gz build: - number: 1 + number: 2 requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/lordec/meta.yaml b/recipes/lordec/meta.yaml index ed7cdee9b623c..8f3c8af8b65a0 100644 --- a/recipes/lordec/meta.yaml +++ b/recipes/lordec/meta.yaml @@ -8,7 +8,7 @@ source: md5: "6b82f9e232eb886293411e3f0d090ab0" build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/lorma/meta.yaml b/recipes/lorma/meta.yaml index 2de748ce3fe3b..844153fba6fdc 100644 --- a/recipes/lorma/meta.yaml +++ b/recipes/lorma/meta.yaml @@ -8,7 +8,7 @@ source: md5: "3a59e427374ffbb84430528bc1430f64" build: - number: 1 + number: 2 skip: True # [osx] requirements: diff --git a/recipes/lumpy-sv/meta.yaml b/recipes/lumpy-sv/meta.yaml index 63c3f2d5701ad..3515b476076e7 100644 --- a/recipes/lumpy-sv/meta.yaml +++ b/recipes/lumpy-sv/meta.yaml @@ -9,16 +9,16 @@ source: sha256: 1a7a5d18875b297acaa68ee1e864ca048654ebc85348920b518dc689d2b7a3cf build: - number: 0 + number: 1 skip: True # [not py27] requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc run: - - zlib + - zlib {{CONDA_ZLIB}}* - python - samtools - gawk diff --git a/recipes/mappy/meta.yaml b/recipes/mappy/meta.yaml index 6f91b4c6f69a3..2662737354215 100644 --- a/recipes/mappy/meta.yaml +++ b/recipes/mappy/meta.yaml @@ -10,7 +10,7 @@ source: sha256: c690b8a5aff8dc450d4cb7d5b2013330e0fa6340612fa5f7aaa74f0f5085e4a8 build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/mapsembler2/meta.yaml b/recipes/mapsembler2/meta.yaml index bf8f03a341090..c8b3a63467c68 100644 --- a/recipes/mapsembler2/meta.yaml +++ b/recipes/mapsembler2/meta.yaml @@ -8,7 +8,7 @@ source: md5: "2165dfa0372356aac2b0a50f53a838ff" build: - number: 1 + number: 2 requirements: build: diff --git a/recipes/mapsplice/meta.yaml b/recipes/mapsplice/meta.yaml index 92daca797178a..9bc96509e2fbf 100644 --- a/recipes/mapsplice/meta.yaml +++ b/recipes/mapsplice/meta.yaml @@ -19,12 +19,12 @@ build: requirements: build: - python - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* run: - python - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* test: diff --git a/recipes/mash/meta.yaml b/recipes/mash/meta.yaml index 78342cf63cb22..b739e6b4d132e 100644 --- a/recipes/mash/meta.yaml +++ b/recipes/mash/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 7bea8cd3c266640bbd97f2e1c9d0168892915c1c14f7d03a9751bf7a3709dd01 build: - number: 0 + number: 1 string: gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} requirements: diff --git a/recipes/mashmap/meta.yaml b/recipes/mashmap/meta.yaml index 5f378e6a17481..34ccbcf0533e1 100644 --- a/recipes/mashmap/meta.yaml +++ b/recipes/mashmap/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 string: gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} source: @@ -16,18 +16,18 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - autoconf - - automake - - perl - - zlib - - gsl {{ CONDA_GSL }}* + - gcc # [not osx] + - llvm # [osx] + - autoconf + - automake + - perl + - zlib {{CONDA_ZLIB}}* + - gsl {{ CONDA_GSL }}* run: - - libgcc # [not osx] - - zlib - - gsl {{ CONDA_GSL }}* + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* + - gsl {{ CONDA_GSL }}* test: commands: diff --git a/recipes/megagta/meta.yaml b/recipes/megagta/meta.yaml index 866d6f889ff25..0a51917bf365f 100644 --- a/recipes/megagta/meta.yaml +++ b/recipes/megagta/meta.yaml @@ -1,9 +1,14 @@ package: name: megagta version: "0.1_alpha" + source: fn: megagta-v0.1alpha-src.tar.gz url: https://github.com/HKU-BAL/megagta/releases/download/v0.1-alpha/megagta-v0.1alpha-src.tar.gz + +build: + number: 1 + requirements: build: - automake @@ -11,20 +16,23 @@ requirements: - m4 - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ant run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - python >=2.7,<3 - hmmer >=3.1b2 + build: skip: True # [osx] + test: requires: - python >=2.7,<3 commands: - megagta.py -v > /dev/null + about: home: https://github.com/HKU-BAL/megagta license: "GNU General Public License v3 (GPLv3" diff --git a/recipes/megahit/meta.yaml b/recipes/megahit/meta.yaml index 9b131a0e3712f..dc96ca5c88bb7 100644 --- a/recipes/megahit/meta.yaml +++ b/recipes/megahit/meta.yaml @@ -3,39 +3,39 @@ {% set sha256 = "d0d3965dd49c6fdaea958ef66146cb6b30b7d51acbbfe94194c437f15a424cb5" %} package: - name: {{ name }} - version: {{ version }} + name: {{ name }} + version: {{ version }} source: - fn: v{{ version }}.tar.gz - sha256: {{ sha256 }} - url: https://github.com/voutcn/{{ name }}/archive/v{{ version }}.tar.gz + fn: v{{ version }}.tar.gz + sha256: {{ sha256 }} + url: https://github.com/voutcn/{{ name }}/archive/v{{ version }}.tar.gz build: - number: 0 + number: 1 requirements: - build: - # megahit requires openpm, which is not available in clang < 3.7 - - gcc - - zlib 1.2.8 - run: - - libgcc # for gomp - - zlib 1.2.8 - - python + build: + # megahit requires openpm, which is not available in clang < 3.7 + - gcc + - zlib {{CONDA_ZLIB}}* + run: + - libgcc # for gomp + - zlib {{CONDA_ZLIB}}* + - python test: - commands: - # Run one of the examples provided with megahit to make sure the - # binaries actually work. - # The output has to be removed to prevent permission failure during - # cleanup after mulled-build. - - megahit --12 $PREFIX/share/megahit/example/readsInterleaved1.fa.gz && rm -r megahit_out + commands: + # Run one of the examples provided with megahit to make sure the + # binaries actually work. + # The output has to be removed to prevent permission failure during + # cleanup after mulled-build. + - megahit --12 $PREFIX/share/megahit/example/readsInterleaved1.fa.gz && rm -r megahit_out about: - home: https://github.com/voutcn/megahit - license: GPL3 - summary: | - MEGAHIT: An ultra-fast single-node solution for large and complex - metagenomics assembly via succinct de Bruijn graph + home: https://github.com/voutcn/megahit + license: GPL3 + summary: | + MEGAHIT: An ultra-fast single-node solution for large and complex + metagenomics assembly via succinct de Bruijn graph diff --git a/recipes/meme/4.11.1/meta.yaml b/recipes/meme/4.11.1/meta.yaml index 261095b40b2e1..580746067f4ea 100644 --- a/recipes/meme/4.11.1/meta.yaml +++ b/recipes/meme/4.11.1/meta.yaml @@ -10,7 +10,7 @@ package: version: 4.11.1 build: - number: 2 + number: 3 skip: True # [osx or py3k] detect_binary_files_with_prefix: True diff --git a/recipes/meme/meta.yaml b/recipes/meme/meta.yaml index abb5f59c0c253..2dc3147492b14 100644 --- a/recipes/meme/meta.yaml +++ b/recipes/meme/meta.yaml @@ -12,7 +12,7 @@ source: - mast.patch build: - number: 0 + number: 1 detect_binary_files_with_prefix: True requirements: diff --git a/recipes/merlin/meta.yaml b/recipes/merlin/meta.yaml index 8ba59aba75799..c70dca0b37087 100644 --- a/recipes/merlin/meta.yaml +++ b/recipes/merlin/meta.yaml @@ -9,15 +9,18 @@ source: sha1: d5227276eae862506c7ed4475255c9be182585df sha256: aa3c087b1c717209389705bf2ace4c24884575014a561dff250c0be93fe1e411 +build: + number: 1 + requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/metavelvet-sl/meta.yaml b/recipes/metavelvet-sl/meta.yaml index bbea85cce30c0..a638838a3858e 100644 --- a/recipes/metavelvet-sl/meta.yaml +++ b/recipes/metavelvet-sl/meta.yaml @@ -15,19 +15,19 @@ source: - run-annoIS.pl.patch build: - number: 2 + number: 3 skip: True # [osx] requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-app-cpanminus - perl-module-build run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-app-cpanminus - perl-module-build diff --git a/recipes/metavelvet/1.1.01/meta.yaml b/recipes/metavelvet/1.1.01/meta.yaml index 83ad3b36ec7f8..c1be5cead293c 100644 --- a/recipes/metavelvet/1.1.01/meta.yaml +++ b/recipes/metavelvet/1.1.01/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'MetaVelvet : An extension of Velvet assembler to de novo metagenome assembly from short sequence reads' build: - number: 0 + number: 1 skip: True # [osx] package: @@ -15,10 +15,10 @@ requirements: build: - libgcc - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* - velvet - metavelvet-annois diff --git a/recipes/metavelvet/meta.yaml b/recipes/metavelvet/meta.yaml index d4908ed9e39cb..a308a4193f3dd 100644 --- a/recipes/metavelvet/meta.yaml +++ b/recipes/metavelvet/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'MetaVelvet : An extension of Velvet assembler to de novo metagenome assembly from short sequence reads' build: - number: 1 + number: 2 skip: True # [osx] package: @@ -15,13 +15,13 @@ requirements: build: - libgcc - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - perl-module-build - - perl-threaded + - perl run: - libgcc - - zlib - - perl-threaded + - zlib {{CONDA_ZLIB}}* + - perl - perl-module-build - velvet diff --git a/recipes/methyldackel/meta.yaml b/recipes/methyldackel/meta.yaml index 1d264d60e853c..8181e617360e6 100644 --- a/recipes/methyldackel/meta.yaml +++ b/recipes/methyldackel/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.3.0" build: - number: 0 + number: 1 skip: False source: @@ -13,11 +13,11 @@ source: requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [not osx] - llvm # [osx] run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [not osx] test: diff --git a/recipes/micro_razers/meta.yaml b/recipes/micro_razers/meta.yaml index 40fe90c70f538..0950052ad9c00 100644 --- a/recipes/micro_razers/meta.yaml +++ b/recipes/micro_razers/meta.yaml @@ -8,7 +8,7 @@ source: sha256: df083d5939d7e73fd00bbc6bb291ac7ea7b8d446cf89a9758fdffdc0eca9ec1c build: - number: 0 + number: 1 skip: True # [osx] requirements: diff --git a/recipes/minialign/meta.yaml b/recipes/minialign/meta.yaml index a0f7493ec2a60..45235e4fee763 100644 --- a/recipes/minialign/meta.yaml +++ b/recipes/minialign/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,13 +15,13 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/miniasm/meta.yaml b/recipes/miniasm/meta.yaml index ac751d3a9e220..4165c1ef1fcf8 100644 --- a/recipes/miniasm/meta.yaml +++ b/recipes/miniasm/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -16,11 +16,11 @@ source: requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/minimap2/meta.yaml b/recipes/minimap2/meta.yaml index 27269701d55bf..2aeb09b2f0826 100644 --- a/recipes/minimap2/meta.yaml +++ b/recipes/minimap2/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ hash }} build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/minvar/1.2a3/meta.yaml b/recipes/minvar/1.2a3/meta.yaml index 8802995e177c3..81a0d0954bb25 100644 --- a/recipes/minvar/1.2a3/meta.yaml +++ b/recipes/minvar/1.2a3/meta.yaml @@ -1,5 +1,5 @@ {% set version = "1.2a3" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/minvar/1.2b/meta.yaml b/recipes/minvar/1.2b/meta.yaml index 64e13d16049e5..be99acfe4400a 100644 --- a/recipes/minvar/1.2b/meta.yaml +++ b/recipes/minvar/1.2b/meta.yaml @@ -1,5 +1,5 @@ {% set version = "1.2b" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/minvar/2.0/meta.yaml b/recipes/minvar/2.0/meta.yaml index bcfb53dbf74ca..51255308e39bf 100644 --- a/recipes/minvar/2.0/meta.yaml +++ b/recipes/minvar/2.0/meta.yaml @@ -1,5 +1,5 @@ {% set version = "2.0" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/minvar/2.1.1/meta.yaml b/recipes/minvar/2.1.1/meta.yaml index 7c2203f541512..84eccef119033 100644 --- a/recipes/minvar/2.1.1/meta.yaml +++ b/recipes/minvar/2.1.1/meta.yaml @@ -1,5 +1,5 @@ {% set version = "2.1.1" %} -{% set build = 1 %} +{% set build = 2 %} package: name: minvar diff --git a/recipes/minvar/2.1.2/meta.yaml b/recipes/minvar/2.1.2/meta.yaml index 6e114098a0a23..f6b6655d88233 100644 --- a/recipes/minvar/2.1.2/meta.yaml +++ b/recipes/minvar/2.1.2/meta.yaml @@ -1,5 +1,5 @@ {% set version = "2.1.2" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/minvar/2.1/meta.yaml b/recipes/minvar/2.1/meta.yaml index a93f3a0d0e84c..40b753c1a4795 100644 --- a/recipes/minvar/2.1/meta.yaml +++ b/recipes/minvar/2.1/meta.yaml @@ -1,5 +1,5 @@ {% set version = "2.1" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/minvar/meta.yaml b/recipes/minvar/meta.yaml index a27a7b522680b..8d3a1dc8388cb 100644 --- a/recipes/minvar/meta.yaml +++ b/recipes/minvar/meta.yaml @@ -1,5 +1,5 @@ {% set version = "2.1.3" %} -{% set build = 0 %} +{% set build = 1 %} package: name: minvar diff --git a/recipes/mosaik/meta.yaml b/recipes/mosaik/meta.yaml index 310866f06cc6e..a0111165a0936 100644 --- a/recipes/mosaik/meta.yaml +++ b/recipes/mosaik/meta.yaml @@ -17,10 +17,10 @@ source: requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc test: @@ -28,5 +28,5 @@ test: - MosaikAligner --help | grep Usage > /dev/null build: - number: 2 + number: 3 skip: False diff --git a/recipes/mosdepth/meta.yaml b/recipes/mosdepth/meta.yaml index 189c3f1883198..8dddbae9fbe05 100644 --- a/recipes/mosdepth/meta.yaml +++ b/recipes/mosdepth/meta.yaml @@ -17,7 +17,7 @@ source: - install.diff build: - number: 0 + number: 1 skip: True # [osx] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" diff --git a/recipes/mothur/1.25.0/meta.yaml b/recipes/mothur/1.25.0/meta.yaml index 50ec7a4d5f814..4b62261c9bee9 100644 --- a/recipes/mothur/1.25.0/meta.yaml +++ b/recipes/mothur/1.25.0/meta.yaml @@ -16,12 +16,10 @@ build: requirements: build: - # - zlib - ncurses {{CONDA_NCURSES}}* - readline run: - # - zlib - ncurses {{CONDA_NCURSES}}* - readline diff --git a/recipes/mothur/1.36.1/meta.yaml b/recipes/mothur/1.36.1/meta.yaml index 2bba8856e5dac..9c6d872434d04 100644 --- a/recipes/mothur/1.36.1/meta.yaml +++ b/recipes/mothur/1.36.1/meta.yaml @@ -11,7 +11,7 @@ source: - Build-Flags.patch build: - number: 3 + number: 4 string: boost1.60_{{PKG_BUILDNUM}} skip: True # [not linux64 or osx] @@ -19,14 +19,14 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - readline - boost >=1.55,1.60* # does not work with boost >1.60 - blast-legacy run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - readline - boost 1.60* diff --git a/recipes/mothur/meta.yaml b/recipes/mothur/meta.yaml index d27fd94db7f06..033e52a6b1386 100644 --- a/recipes/mothur/meta.yaml +++ b/recipes/mothur/meta.yaml @@ -10,7 +10,7 @@ source: - Build-Flags.patch build: - number: 0 + number: 1 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} skip: True # [not linux64 or osx] @@ -18,14 +18,14 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - readline - boost >=1.55,{{CONDA_BOOST}}* - blast-legacy run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses - readline - boost {{CONDA_BOOST}}* @@ -39,4 +39,4 @@ about: home: http://www.mothur.org license: GPL license_file: LICENSE.md - summary: This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. \ No newline at end of file + summary: This project seeks to develop a single piece of open-source, expandable software to fill the bioinformatics needs of the microbial ecology community. diff --git a/recipes/muse/meta.yaml b/recipes/muse/meta.yaml index 7299f99c090b6..2c4d3e88a58e4 100644 --- a/recipes/muse/meta.yaml +++ b/recipes/muse/meta.yaml @@ -7,7 +7,7 @@ source: url: https://github.com/danielfan/MuSE/archive/v1.0-rc.tar.gz build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/nanopolish/0.4.0/meta.yaml b/recipes/nanopolish/0.4.0/meta.yaml index 2a2f64908835e..8943d1ea402e8 100644 --- a/recipes/nanopolish/0.4.0/meta.yaml +++ b/recipes/nanopolish/0.4.0/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.4.0" build: - number: 0 + number: 1 skip: True # [osx] source: @@ -18,14 +18,14 @@ requirements: build: - gcc - fast5 - - htslib - - hdf5 + - htslib {{ CONDA_HTSLIB }}* + - hdf5 {{ CONDA_HDF5 }}* run: - libgcc - fast5 - - htslib - - hdf5 + - htslib {{ CONDA_HTSLIB }}* + - hdf5 {{ CONDA_HDF5 }}* - biopython test: @@ -37,4 +37,3 @@ about: license: MIT license_file: LICENSE summary: Signal-level algorithms for MinION data - diff --git a/recipes/nanopolish/meta.yaml b/recipes/nanopolish/meta.yaml index 4da2b281a562f..0dada866c7639 100644 --- a/recipes/nanopolish/meta.yaml +++ b/recipes/nanopolish/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 3 + number: 4 string: "ncurses{{CONDA_NCURSES}}_{{PKG_BUILDNUM}}" source: diff --git a/recipes/netreg/meta.yaml b/recipes/netreg/meta.yaml index f971244b5dc5a..f029e899c1070 100644 --- a/recipes/netreg/meta.yaml +++ b/recipes/netreg/meta.yaml @@ -10,7 +10,7 @@ about: doc_url: https://dirmeier.github.io/netReg/ build: - number: 0 + number: 1 package: name: {{ name }} diff --git a/recipes/ngless/meta.yaml b/recipes/ngless/meta.yaml index 1c93f2065b1d1..2c4bee2ae38ec 100644 --- a/recipes/ngless/meta.yaml +++ b/recipes/ngless/meta.yaml @@ -12,7 +12,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -23,7 +23,7 @@ requirements: - zlib {{CONDA_ZLIB}}* - perl - wget - - xz 5.2.* + - xz {{CONDA_XZ}}* - gcc # necessary for megahit run: - python @@ -31,7 +31,7 @@ requirements: - gmp {{CONDA_GMP}}* - zlib {{CONDA_ZLIB}}* - libgcc # for gomp (megahit) - - xz 5.2.* + - xz {{CONDA_XZ}}* test: diff --git a/recipes/ngmlr/0.2.2/meta.yaml b/recipes/ngmlr/0.2.2/meta.yaml index 328807031dd3c..36a7eb95b5ca4 100644 --- a/recipes/ngmlr/0.2.2/meta.yaml +++ b/recipes/ngmlr/0.2.2/meta.yaml @@ -8,16 +8,16 @@ source: md5: "449f0d972c907c64c6ddee08c2308826" build: - number: 0 + number: 1 requirements: build: - gcc >=4.8.2 # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/ngmlr/0.2.3/meta.yaml b/recipes/ngmlr/0.2.3/meta.yaml index 9643d7c5f8bbe..8b0a39077b86c 100644 --- a/recipes/ngmlr/0.2.3/meta.yaml +++ b/recipes/ngmlr/0.2.3/meta.yaml @@ -4,7 +4,7 @@ about: license: MIT summary: "ngmlr is a long-read mapper desigend to align PacBilo or Oxford Nanopore to a reference genome optimized for structural variation detection" build: - number: 0 + number: 1 package: name: ngmlr version: "0.2.3" @@ -13,9 +13,9 @@ requirements: - gcc >=4.8.2 # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] source: fn: ngmlr-v0.2.3.tar.gz diff --git a/recipes/ngmlr/0.2.4/meta.yaml b/recipes/ngmlr/0.2.4/meta.yaml index acc8c227f74e6..c4b46366449d1 100644 --- a/recipes/ngmlr/0.2.4/meta.yaml +++ b/recipes/ngmlr/0.2.4/meta.yaml @@ -4,7 +4,7 @@ about: license: MIT summary: "ngmlr is a long-read mapper designed to align PacBio or Oxford Nanopore reads to a reference genome and optimized for structural variation detection" build: - number: 0 + number: 1 package: name: ngmlr version: "0.2.4" @@ -13,9 +13,9 @@ requirements: - gcc >=4.8.2 # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] source: fn: ngmlr-v0.2.4.tar.gz diff --git a/recipes/ngmlr/meta.yaml b/recipes/ngmlr/meta.yaml index 2315c9a58ce9b..4cc2f24d68648 100644 --- a/recipes/ngmlr/meta.yaml +++ b/recipes/ngmlr/meta.yaml @@ -10,16 +10,16 @@ source: url: "https://github.com/philres/ngmlr/archive/v{{ version }}.tar.gz" build: - number: 0 + number: 1 requirements: build: - gcc >=4.8.2 # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/novobreak/meta.yaml b/recipes/novobreak/meta.yaml index 7acf565df37f8..6e8596d4680f3 100644 --- a/recipes/novobreak/meta.yaml +++ b/recipes/novobreak/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: novobreak-{{ version }}.zip diff --git a/recipes/nspdk/meta.yaml b/recipes/nspdk/meta.yaml index 3636eff37e84e..c0c597ecd3e1c 100644 --- a/recipes/nspdk/meta.yaml +++ b/recipes/nspdk/meta.yaml @@ -8,17 +8,17 @@ source: sha256: 90955549e7d3e268d194cb89a38018a323f050c1c524d35630733f4cd97664a6 build: - number: 0 + number: 1 skip: True # [not linux64 or osx] requirements: build: - gcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/ntcard/meta.yaml b/recipes/ntcard/meta.yaml index c00244c7597d2..60de79b0c0548 100644 --- a/recipes/ntcard/meta.yaml +++ b/recipes/ntcard/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -15,15 +15,15 @@ source: requirements: build: - - gcc - - automake - - autoconf - - perl - - zlib + - gcc + - automake + - autoconf + - perl + - zlib {{CONDA_ZLIB}}* run: - - libgcc - - zlib + - libgcc + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/nucleoatac/meta.yaml b/recipes/nucleoatac/meta.yaml index 047366bbc470c..f368675516bcc 100644 --- a/recipes/nucleoatac/meta.yaml +++ b/recipes/nucleoatac/meta.yaml @@ -17,7 +17,7 @@ source: md5: 668525f351241d71ce5263dba0464317 build: - number: 0 + number: 1 skip: True # [not py27] requirements: @@ -28,7 +28,7 @@ requirements: - scipy - matplotlib - pysam >=0.8.1 - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - cython >=0.22 @@ -36,11 +36,11 @@ requirements: - scipy - matplotlib - pysam >=0.8.1 - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: - nucleoatac run --help - pyatac --help import: - - pyatac.fragmentsizes \ No newline at end of file + - pyatac.fragmentsizes diff --git a/recipes/ococo/meta.yaml b/recipes/ococo/meta.yaml index edf369769115d..50bec78559a80 100644 --- a/recipes/ococo/meta.yaml +++ b/recipes/ococo/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: ococo-{{ version }}.tar.gz diff --git a/recipes/openbabel/2.3.2/meta.yaml b/recipes/openbabel/2.3.2/meta.yaml index cb8faa40f48f8..de9aeaa306958 100644 --- a/recipes/openbabel/2.3.2/meta.yaml +++ b/recipes/openbabel/2.3.2/meta.yaml @@ -8,25 +8,26 @@ about: build: skip: True # [not py27 or osx] - number: 1 + number: 2 package: name: openbabel version: 2.3.2 requirements: - build: - - python - - gcc # [linux] - - llvm # [osx] - - cmake - - eigen - - libxml2 - - zlib - - cairo - run: - - python - - libgcc # [linux] + build: + - python + - gcc # [linux] + - llvm # [osx] + - cmake + - eigen + - libxml2 + - zlib {{CONDA_ZLIB}}* + - cairo + run: + - python + - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* source: fn: openbabel-2.3.2.tar.gz diff --git a/recipes/openbabel/2.4.1/meta.yaml b/recipes/openbabel/2.4.1/meta.yaml index e20a0f6051acd..03d1646d0a7ce 100644 --- a/recipes/openbabel/2.4.1/meta.yaml +++ b/recipes/openbabel/2.4.1/meta.yaml @@ -18,7 +18,7 @@ source: build: # https://bugs.archlinux.org/task/52409 skip: true # [not py2k and not py35] - number: 1 + number: 2 detect_binary_files_with_prefix: true requirements: @@ -26,7 +26,7 @@ requirements: - gcc # [linux] - llvm # [osx] - cmake - - zlib + - zlib {{CONDA_ZLIB}}* - swig - eigen - bzip2 @@ -36,7 +36,7 @@ requirements: run: - python - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - libxml2 - cairo # [linux] - xorg-libxau diff --git a/recipes/openms/2.2.0/meta.yaml b/recipes/openms/2.2.0/meta.yaml index 4f544fa2dac26..db050b09967e5 100644 --- a/recipes/openms/2.2.0/meta.yaml +++ b/recipes/openms/2.2.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: 61e7d24890abb6f462e2f026efb0dc88b84639b228d96e919c8074d3b11d286e build: - number: 0 + number: 1 string: py{{CONDA_PY}}_boost{{ boost }}_{{PKG_BUILDNUM}} skip: True # [py3k] diff --git a/recipes/openms/meta.yaml b/recipes/openms/meta.yaml index 52bb443401238..40516d0a75c8e 100644 --- a/recipes/openms/meta.yaml +++ b/recipes/openms/meta.yaml @@ -11,7 +11,7 @@ source: sha256: 574c3ea73ec3e57f87446a86563d2c954baa290b3cf72aff8fa149c2a086bba4 build: - number: 0 + number: 1 string: py{{CONDA_PY}}_boost{{ boost }}_{{PKG_BUILDNUM}} # osx times out on travis skip: True # [py3k or osx] diff --git a/recipes/openslide/meta.yaml b/recipes/openslide/meta.yaml index ed6ce0e48fe4e..a0696057e20ff 100644 --- a/recipes/openslide/meta.yaml +++ b/recipes/openslide/meta.yaml @@ -5,7 +5,7 @@ package: version: {{OPENSLIDE_VERSION}} build: - number: 2 + number: 3 skip: True # [py3k] source: @@ -21,7 +21,7 @@ requirements: - perl - gcc >=4.7 # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - jpeg - libtiff >=4 - openjpeg >=2.1 @@ -39,7 +39,7 @@ requirements: run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - jpeg - libpng - libtiff >=4 diff --git a/recipes/osra/2.1.0/meta.yaml b/recipes/osra/2.1.0/meta.yaml index 3674ca2b20b1c..ae04107f09466 100644 --- a/recipes/osra/2.1.0/meta.yaml +++ b/recipes/osra/2.1.0/meta.yaml @@ -3,7 +3,7 @@ package: version: 2.1.0 build: - number: 0 + number: 1 skip: True # [not py27 or osx] source: @@ -25,7 +25,7 @@ requirements: - cmake - eigen - libxml2 - - zlib + - zlib {{CONDA_ZLIB}}* - cairo - wget @@ -37,6 +37,7 @@ requirements: - graphicsmagick >=1.3.26 - tesseract - ocrad + - zlib {{CONDA_ZLIB}}* - poppler test: diff --git a/recipes/pairix/meta.yaml b/recipes/pairix/meta.yaml index 5e15770840cc4..03156913a1e3b 100644 --- a/recipes/pairix/meta.yaml +++ b/recipes/pairix/meta.yaml @@ -16,7 +16,6 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib - python - setuptools diff --git a/recipes/paladin/meta.yaml b/recipes/paladin/meta.yaml index f68d0b40243c3..905b3d37589f3 100644 --- a/recipes/paladin/meta.yaml +++ b/recipes/paladin/meta.yaml @@ -14,18 +14,18 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - curl run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - curl test: diff --git a/recipes/pandaseq/meta.yaml b/recipes/pandaseq/meta.yaml index eed57af0e72cd..2c7cd25057849 100644 --- a/recipes/pandaseq/meta.yaml +++ b/recipes/pandaseq/meta.yaml @@ -1,37 +1,39 @@ package: - name: pandaseq - version: "2.11" + name: pandaseq + version: "2.11" build: - number: 1 - skip: False + number: 2 + skip: False source: - fn: pandaseq_v2.11.tar.gz - url: https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz - md5: a8ae0e938bac592fc07dfa668147d80b + fn: pandaseq_v2.11.tar.gz + url: https://github.com/neufeld/pandaseq/archive/v2.11.tar.gz + md5: a8ae0e938bac592fc07dfa668147d80b requirements: - build: - - gcc [linux] - - llvm [osx] - - autoconf 2.69 pl5.* - - automake 1.15 pl5.* - - zlib - - pkg-config - - libtool - - bzip2 + build: + - gcc [linux] + - llvm [osx] + - autoconf 2.69 pl5.* + - automake 1.15 pl5.* + - zlib {{CONDA_ZLIB}}* + - pkg-config + - libtool + - bzip2 {{CONDA_BZIP2}}* - run: - - libtool [linux] - - libgcc [linux] + run: + - libtool [linux] + - libgcc [linux] + - zlib {{CONDA_ZLIB}}* + - bzip2 {{CONDA_BZIP2}}* test: - commands: - - pandaseq -v 2>&1 | grep "pandaseq" > /dev/null + commands: + - pandaseq -v 2>&1 | grep "pandaseq" > /dev/null about: - home: https://github.com/neufeld/pandaseq - license: GPL3 - license_file: COPYING - summary: PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. + home: https://github.com/neufeld/pandaseq + license: GPL3 + license_file: COPYING + summary: PANDASEQ is a program to align Illumina reads, optionally with PCR primers embedded in the sequence, and reconstruct an overlapping sequence. diff --git a/recipes/parafly/meta.yaml b/recipes/parafly/meta.yaml index 542bf283caab1..379ef1a502d00 100644 --- a/recipes/parafly/meta.yaml +++ b/recipes/parafly/meta.yaml @@ -8,15 +8,15 @@ source: sha256: 64cf7ac2d4af0801b78d58f4057a1489d76b2b8ae59c78997f434d1239fa4abe build: - number: 0 + number: 1 requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/pbbam/meta.yaml b/recipes/pbbam/meta.yaml index 0d56ece30fa1a..9e2419a5bb8f5 100644 --- a/recipes/pbbam/meta.yaml +++ b/recipes/pbbam/meta.yaml @@ -6,26 +6,26 @@ package: version: {{ version }} build: - number: 1 - skip: False - string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} + number: 2 + skip: False + string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} source: - git_url: https://github.com/PacificBiosciences/{{ name }}.git - git_rev: 928605a86ac024aced821fe4a4bce0b43d5ee680 - + git_url: https://github.com/PacificBiosciences/{{ name }}.git + git_rev: 928605a86ac024aced821fe4a4bce0b43d5ee680 + requirements: - build: - - llvm # [osx] - - gcc # [linux] - - cmake - - boost {{CONDA_BOOST}}* - - zlib + build: + - llvm # [osx] + - gcc # [linux] + - cmake + - boost {{CONDA_BOOST}}* + - zlib {{CONDA_ZLIB}}* - run: - - libgcc # [linux] - - htslib - - zlib + run: + - libgcc # [linux] + - htslib + - zlib {{CONDA_ZLIB}}* test: commands: @@ -38,4 +38,3 @@ about: home: https://github.com/PacificBiosciences/{{ name }} license: BSD-3-Clause-Clear summary: PacBio BAM C++ library, with SWIG bindings - diff --git a/recipes/peakranger/meta.yaml b/recipes/peakranger/meta.yaml index 9844d2270f48c..f82c179a6d5dc 100644 --- a/recipes/peakranger/meta.yaml +++ b/recipes/peakranger/meta.yaml @@ -10,7 +10,7 @@ source: - makefile.patch build: - number: 1 + number: 2 skip: True # [osx] string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} diff --git a/recipes/pear/meta.yaml b/recipes/pear/meta.yaml index 781d76737906b..badbddea6c473 100644 --- a/recipes/pear/meta.yaml +++ b/recipes/pear/meta.yaml @@ -13,19 +13,19 @@ source: url: http://sco.h-its.org/exelixis/web/software/pear/files/pear-0.9.6-src.tar.gz build: - number: 2 + number: 3 requirements: build: - gcc # [not osx] - llvm # [osx] - pkgconfig - - zlib - - bzip2 + - zlib {{CONDA_ZLIB}}* + - bzip2 {{CONDA_BZIP2}}* run: - libgcc # [not osx] - - zlib - - bzip2 + - zlib {{CONDA_ZLIB}}* + - bzip2 {{CONDA_BZIP2}}* test: commands: diff --git a/recipes/percolator/meta.yaml b/recipes/percolator/meta.yaml index 957c9aeff631b..78ab516b83f9a 100644 --- a/recipes/percolator/meta.yaml +++ b/recipes/percolator/meta.yaml @@ -8,7 +8,7 @@ source: md5: fcb37bc5fcd0149cc775c3e72ff3dc24 build: - number: 3 + number: 4 string: boost_1.62{{PKG_BUILDNUM}} skip: True # [osx] diff --git a/recipes/perl-bio-db-hts/meta.yaml b/recipes/perl-bio-db-hts/meta.yaml index 18bbff80e468c..f3fdc01aac597 100644 --- a/recipes/perl-bio-db-hts/meta.yaml +++ b/recipes/perl-bio-db-hts/meta.yaml @@ -10,19 +10,19 @@ source: md5: a09468d02a7e58673b177e60915f28b0 build: - number: 0 + number: 1 skip: true # [osx] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-module-build - perl-bioperl - htslib {{CONDA_HTSLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-bioperl - htslib {{CONDA_HTSLIB}}* diff --git a/recipes/perl-bio-samtools/meta.yaml b/recipes/perl-bio-samtools/meta.yaml index 99a8dbf3cbc71..18a1266b2b881 100644 --- a/recipes/perl-bio-samtools/meta.yaml +++ b/recipes/perl-bio-samtools/meta.yaml @@ -18,12 +18,12 @@ requirements: - perl-bioperl-core - perl-module-build - samtools <=0.1.17 - - zlib + - zlib {{CONDA_ZLIB}}* run: - perl-threaded - perl-bioperl-core - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/perl-compress-raw-zlib/meta.yaml b/recipes/perl-compress-raw-zlib/meta.yaml index 5d15b7c522eec..146cc890c96e6 100644 --- a/recipes/perl-compress-raw-zlib/meta.yaml +++ b/recipes/perl-compress-raw-zlib/meta.yaml @@ -7,17 +7,17 @@ source: url: https://cpan.metacpan.org/authors/id/P/PM/PMQS/Compress-Raw-Zlib-2.069.tar.gz build: - number: 3 + number: 4 requirements: build: - gcc - - perl-threaded + - perl - perl-app-cpanminus - perl-module-build run: - libgcc - - perl-threaded + - perl test: imports: diff --git a/recipes/perl-devel-symdump/2.18/meta.yaml b/recipes/perl-devel-symdump/2.18/meta.yaml index 49c602317f044..6ec289908c4a0 100644 --- a/recipes/perl-devel-symdump/2.18/meta.yaml +++ b/recipes/perl-devel-symdump/2.18/meta.yaml @@ -20,13 +20,8 @@ requirements: build: - perl - perl-extutils-makemaker - #- perl-compress-zlib - #- perl-test-more - run: - perl - #- perl-compress-zlib - #- perl-test-more test: # Perl 'use' tests diff --git a/recipes/perl-io-compress/meta.yaml b/recipes/perl-io-compress/meta.yaml index 433ace5fdadd3..edb1c325e941d 100644 --- a/recipes/perl-io-compress/meta.yaml +++ b/recipes/perl-io-compress/meta.yaml @@ -8,18 +8,18 @@ source: md5: b26925161e3f01919f60344d1bbb49c4 build: - number: 1 + number: 2 requirements: build: - - perl-threaded + - perl - perl-compress-raw-zlib - perl-compress-raw-bzip2 >=2.069 - perl-scalar-list-utils - perl-extutils-makemaker run: - - perl-threaded + - perl - perl-compress-raw-zlib - perl-compress-raw-bzip2 >=2.069 - perl-scalar-list-utils diff --git a/recipes/perl-io-gzip/meta.yaml b/recipes/perl-io-gzip/meta.yaml index f2202f1399fb5..90b1aa8fa0516 100644 --- a/recipes/perl-io-gzip/meta.yaml +++ b/recipes/perl-io-gzip/meta.yaml @@ -8,7 +8,7 @@ source: md5: 0393eae5d0b23df6cf40ed44af7d711c build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/perl-net-ssleay/meta.yaml b/recipes/perl-net-ssleay/meta.yaml index dd04398a3ce4d..12ec056404d98 100644 --- a/recipes/perl-net-ssleay/meta.yaml +++ b/recipes/perl-net-ssleay/meta.yaml @@ -7,19 +7,19 @@ source: url: https://cpan.metacpan.org/authors/id/M/MI/MIKEM/Net-SSLeay-1.74.tar.gz build: - number: 0 + number: 1 requirements: build: - perl-threaded - gcc - openssl - - zlib + - zlib {{CONDA_ZLIB}}* run: - perl-threaded - openssl - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc test: diff --git a/recipes/perl-perlio-gzip/meta.yaml b/recipes/perl-perlio-gzip/meta.yaml index 70ce23f2db0c4..9ddf4b047f39b 100644 --- a/recipes/perl-perlio-gzip/meta.yaml +++ b/recipes/perl-perlio-gzip/meta.yaml @@ -8,16 +8,16 @@ source: md5: "dbcfc1450f6b593b65048b8ced061c98" build: - number: 1 + number: 2 requirements: build: - perl - - zlib + - zlib {{CONDA_ZLIB}}* run: - perl - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/pileometh/meta.yaml b/recipes/pileometh/meta.yaml index 0021d6890931f..9bce0340a689b 100644 --- a/recipes/pileometh/meta.yaml +++ b/recipes/pileometh/meta.yaml @@ -3,7 +3,7 @@ package: version: "0.1.13" build: - number: 0 + number: 1 skip: False source: @@ -13,10 +13,10 @@ source: requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/pindel/meta.yaml b/recipes/pindel/meta.yaml index 818f264cea582..31d452734b0a0 100644 --- a/recipes/pindel/meta.yaml +++ b/recipes/pindel/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [osx] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" diff --git a/recipes/plastid/meta.yaml b/recipes/plastid/meta.yaml index be61e8779a702..206fb3b8388b6 100644 --- a/recipes/plastid/meta.yaml +++ b/recipes/plastid/meta.yaml @@ -7,7 +7,7 @@ source: md5: 1a1c750b9081d46fa688cf8fcbaa2ad3 build: - number: 0 + number: 1 requirements: build: @@ -23,7 +23,7 @@ requirements: - matplotlib >=1.4.0 - biopython >=1.64 - twobitreader >=3.0.0 - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [not osx] - llvm # [osx] @@ -40,7 +40,7 @@ requirements: - matplotlib >=1.4.0 - biopython >=1.64 - twobitreader >=3.0.0 - - zlib + - zlib {{CONDA_ZLIB}}* - bowtie - ucsc-bedtobigbed - fastx_toolkit diff --git a/recipes/platypus-variant/meta.yaml b/recipes/platypus-variant/meta.yaml index 1e713d48698af..329c3b003b01d 100644 --- a/recipes/platypus-variant/meta.yaml +++ b/recipes/platypus-variant/meta.yaml @@ -7,7 +7,7 @@ package: name: platypus-variant version: {{ version }} build: - number: 0 + number: 1 skip: True # [not py27] string: "htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" source: diff --git a/recipes/plink/meta.yaml b/recipes/plink/meta.yaml index 2c91f7926c9a9..78faff418f9cd 100644 --- a/recipes/plink/meta.yaml +++ b/recipes/plink/meta.yaml @@ -9,16 +9,19 @@ source: sha1: 9f41c77daa84c365aa659adf0619197fde1337bf sha256: af7bfa27bb303f9bf19b15d4a99e5e8f85de76013b54c05f3479385830598b4d +build: + number: 1 + requirements: build: - gcc # [not osx] - llvm # [osx] - openblas # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - openblas # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/preseq/meta.yaml b/recipes/preseq/meta.yaml index 6e661caf68d2b..dd9574819394c 100644 --- a/recipes/preseq/meta.yaml +++ b/recipes/preseq/meta.yaml @@ -10,19 +10,19 @@ source: - makefile.patch build: - number: 0 + number: 1 string: "gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}}" requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* test: diff --git a/recipes/prophyle/0.1.0/meta.yaml b/recipes/prophyle/0.1.0/meta.yaml index f3a820cee3297..d0ca2667b233f 100644 --- a/recipes/prophyle/0.1.0/meta.yaml +++ b/recipes/prophyle/0.1.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: True # [py27] script: python setup.py install diff --git a/recipes/prophyle/0.2.0/meta.yaml b/recipes/prophyle/0.2.0/meta.yaml index ae255c8ea7394..4f4eb7be2b1e2 100644 --- a/recipes/prophyle/0.2.0/meta.yaml +++ b/recipes/prophyle/0.2.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: True # [py27] script: $PYTHON setup.py install --single-version-externally-managed --record=record.txt diff --git a/recipes/prophyle/0.2.1/meta.yaml b/recipes/prophyle/0.2.1/meta.yaml index daa7a94e26a61..49af1b09cffe2 100644 --- a/recipes/prophyle/0.2.1/meta.yaml +++ b/recipes/prophyle/0.2.1/meta.yaml @@ -11,7 +11,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 skip: True # [py27] script: entry_points: diff --git a/recipes/prophyle/0.3.0/meta.yaml b/recipes/prophyle/0.3.0/meta.yaml index 97991afb2e95d..88aabc178c9cc 100644 --- a/recipes/prophyle/0.3.0/meta.yaml +++ b/recipes/prophyle/0.3.0/meta.yaml @@ -11,7 +11,7 @@ source: sha256: {{ sha256 }} build: - number: 1 + number: 2 skip: True # [py27] script: entry_points: diff --git a/recipes/prophyle/meta.yaml b/recipes/prophyle/meta.yaml index d1edb23199992..786258db12e8c 100644 --- a/recipes/prophyle/meta.yaml +++ b/recipes/prophyle/meta.yaml @@ -11,7 +11,7 @@ source: sha256: {{ sha256 }} build: - number: 1 + number: 2 skip: True # [py27] script: entry_points: diff --git a/recipes/prosic/meta.yaml b/recipes/prosic/meta.yaml index 754d5c403d401..5e747aa88dad4 100644 --- a/recipes/prosic/meta.yaml +++ b/recipes/prosic/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 string: "gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}}" source: @@ -19,11 +19,11 @@ requirements: - gcc 4.8.2* # work around broken 4.8.5 - rust >=1.12 - gsl {{CONDA_GSL}}* - - zlib + - zlib {{CONDA_ZLIB}}* run: - gsl {{CONDA_GSL}}* - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/prosolo/meta.yaml b/recipes/prosolo/meta.yaml index 5d432d1076eef..fe9c7b98f3f0c 100644 --- a/recipes/prosolo/meta.yaml +++ b/recipes/prosolo/meta.yaml @@ -8,7 +8,7 @@ build: # only on OSX, `cargo install` fails with: `thread 'main' panicked at 'assertion failed: src_path.is_absolute()', src/tools/cargo/src/cargo/core/manifest.rs:311` # looks like a `cargo` bug, that may go away with newer `rust` versions; check osx with rust>1.21 when available skip: True # [not linux64] - number: 0 + number: 1 string: "gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}}" source: @@ -25,7 +25,7 @@ requirements: - zlib {{ CONDA_ZLIB }}* # new cram dependencies for rust-htslib 0.16.0 - bzip2 {{ CONDA_BZIP2 }}* # [linux] - - xz + - xz {{CONDA_XZ}}* - clangdev run: - gsl {{CONDA_GSL}}* @@ -33,7 +33,7 @@ requirements: - zlib {{ CONDA_ZLIB }}* # new cram dependencies for rust-htslib 0.16.0 - bzip2 {{ CONDA_BZIP2 }}* # [linux] - - xz + - xz {{CONDA_XZ}}* - clangdev test: diff --git a/recipes/pullseq/meta.yaml b/recipes/pullseq/meta.yaml index 177eb06469768..4b30b83b8f6ba 100644 --- a/recipes/pullseq/meta.yaml +++ b/recipes/pullseq/meta.yaml @@ -8,7 +8,7 @@ source: md5: a4ef6e5b4b5c77be2ef5d444c44fb6c0 build: - number: 1 + number: 2 requirements: build: @@ -18,12 +18,12 @@ requirements: - autoconf 2.69 pl5.* - automake 1.15 pl5.* - libtool - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - pcre - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/pybedtools/0.6.9/meta.yaml b/recipes/pybedtools/0.6.9/meta.yaml index d8bac6708afbe..c0c2c03de7679 100644 --- a/recipes/pybedtools/0.6.9/meta.yaml +++ b/recipes/pybedtools/0.6.9/meta.yaml @@ -8,7 +8,7 @@ source: md5: a24e4bcd0c89beb9535295db964f6a4a build: - number: 0 + number: 1 skip: True # [py3k] requirements: diff --git a/recipes/pybedtools/meta.yaml b/recipes/pybedtools/meta.yaml index 16c5242264701..51d6af7bd1747 100644 --- a/recipes/pybedtools/meta.yaml +++ b/recipes/pybedtools/meta.yaml @@ -8,7 +8,7 @@ source: md5: f003c67e22c48b77f070538368ece70c build: - number: 1 + number: 2 requirements: build: @@ -20,7 +20,7 @@ requirements: - cython - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python @@ -29,6 +29,7 @@ requirements: - pysam >=0.8.1 - pandas - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/pymvpa/2.6.0/meta.yaml b/recipes/pymvpa/2.6.0/meta.yaml index 4984d70ce011d..75fc75c17e1ce 100644 --- a/recipes/pymvpa/2.6.0/meta.yaml +++ b/recipes/pymvpa/2.6.0/meta.yaml @@ -14,7 +14,7 @@ source: # If this is a new build for the same version, increment the build # number. If you do not include this key, it defaults to 0. build: - number: 0 + number: 1 requirements: build: @@ -25,11 +25,11 @@ requirements: - scipy - numpy - swig - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - - zlib + - zlib {{CONDA_ZLIB}}* - libsvm ==3.21 - matplotlib - scipy diff --git a/recipes/pysam/0.10.0/meta.yaml b/recipes/pysam/0.10.0/meta.yaml index 1137b85b24e4f..088c9a8decd9d 100644 --- a/recipes/pysam/0.10.0/meta.yaml +++ b/recipes/pysam/0.10.0/meta.yaml @@ -10,7 +10,7 @@ source: - osx_rpath.patch [osx] build: - number: 3 + number: 4 skip: False binary_relocation: False # [linux] @@ -24,7 +24,7 @@ requirements: - cython - python - setuptools - - zlib + - zlib {{CONDA_ZLIB}}* - curl run: @@ -33,7 +33,7 @@ requirements: - samtools >=1.3,<1.4 - bcftools >=1.3,<1.4 - python - - zlib + - zlib {{CONDA_ZLIB}}* - curl test: diff --git a/recipes/pysam/0.7.7/meta.yaml b/recipes/pysam/0.7.7/meta.yaml index c045904a3669c..ac18cd47455c6 100644 --- a/recipes/pysam/0.7.7/meta.yaml +++ b/recipes/pysam/0.7.7/meta.yaml @@ -1,13 +1,16 @@ package: name: pysam version: "0.7.7" + source: fn: pysam-0.7.7.tar.gz url: https://pypi.python.org/packages/source/p/pysam/pysam-0.7.7.tar.gz sha256: c9f3018482eec99ee199dda3fdef2aa7424dde6574672a4c0d209a10985755cc + build: - number: 0 + number: 1 skip: True # [not py27] + requirements: build: - python @@ -15,14 +18,16 @@ requirements: - cython - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python <3.0.0 - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* + test: imports: - pysam + about: home: https://github.com/pysam-developers/pysam license: MIT diff --git a/recipes/pysam/0.8.3/meta.yaml b/recipes/pysam/0.8.3/meta.yaml index 3443685381849..e097ac5e20969 100644 --- a/recipes/pysam/0.8.3/meta.yaml +++ b/recipes/pysam/0.8.3/meta.yaml @@ -1,12 +1,15 @@ package: name: pysam version: "0.8.3" + source: fn: pysam-0.8.3.tar.gz url: https://pypi.python.org/packages/source/p/pysam/pysam-0.8.3.tar.gz md5: b1ae2a8ec3c6d20be30b2bc1aa995bbf + build: - number: 2 + number: 3 + requirements: build: - python @@ -14,11 +17,12 @@ requirements: - cython - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* + test: # Python imports imports: @@ -28,6 +32,7 @@ test: # - pysam.include.htslib.htslib # - pysam.include.samtools # - pysam.include.samtools.win32 + about: home: https://github.com/pysam-developers/pysam license: MIT diff --git a/recipes/pysam/0.9.1/meta.yaml b/recipes/pysam/0.9.1/meta.yaml index 1736c57da5ec8..dedc17c6710e8 100644 --- a/recipes/pysam/0.9.1/meta.yaml +++ b/recipes/pysam/0.9.1/meta.yaml @@ -8,7 +8,7 @@ source: md5: d87765ad1e0afe534255c20cce5478e4 build: - number: 2 + number: 3 skip: False requirements: @@ -21,7 +21,7 @@ requirements: - cython - python - setuptools - - zlib + - zlib {{CONDA_ZLIB}}* - curl run: @@ -30,7 +30,7 @@ requirements: - samtools ==1.3.1 - bcftools ==1.3.1 - python - - zlib + - zlib {{CONDA_ZLIB}}* - curl test: diff --git a/recipes/pysam/meta.yaml b/recipes/pysam/meta.yaml index 9f35b88d3804d..97ab57c672dd6 100644 --- a/recipes/pysam/meta.yaml +++ b/recipes/pysam/meta.yaml @@ -1,18 +1,18 @@ package: - name: pysam - version: 0.13.0 + name: pysam + version: 0.13.0 source: - fn: v0.13.0.tar.gz - url: https://github.com/pysam-developers/pysam/archive/v0.13.0.tar.gz - md5: 2a7456eaf8b30f5a2668667b24aa89ce + fn: v0.13.0.tar.gz + url: https://github.com/pysam-developers/pysam/archive/v0.13.0.tar.gz + md5: 2a7456eaf8b30f5a2668667b24aa89ce build: - number: 0 - skip: False - binary_relocation: False # [linux] - string: "py{{CONDA_PY}}_htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" + number: 1 + skip: False + binary_relocation: False # [linux] + string: "py{{CONDA_PY}}_htslib{{CONDA_HTSLIB}}_{{PKG_BUILDNUM}}" extra: skip-lints: @@ -20,33 +20,31 @@ extra: - missing_hash requirements: - build: - - gcc # [linux] - - llvm # [osx] - - htslib {{CONDA_HTSLIB}}* - - samtools {{CONDA_HTSLIB}}* - - bcftools {{CONDA_HTSLIB}}* - - cython - - python - - setuptools - - zlib - - curl - - run: - - libgcc # [linux] - - htslib {{CONDA_HTSLIB}}* - - samtools {{CONDA_HTSLIB}}* - - bcftools {{CONDA_HTSLIB}}* - - python - - zlib - - curl + build: + - gcc # [linux] + - llvm # [osx] + - htslib {{CONDA_HTSLIB}}* + - samtools {{CONDA_HTSLIB}}* + - bcftools {{CONDA_HTSLIB}}* + - cython + - python + - setuptools + - zlib {{CONDA_ZLIB}}* + - curl + run: + - libgcc # [linux] + - htslib {{CONDA_HTSLIB}}* + - samtools {{CONDA_HTSLIB}}* + - bcftools {{CONDA_HTSLIB}}* + - python + - zlib {{CONDA_ZLIB}}* + - curl test: - - imports: - - pysam + imports: + - pysam about: - home: https://github.com/pysam-developers/pysam - license: MIT - summary: "Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix." + home: https://github.com/pysam-developers/pysam + license: MIT + summary: "Pysam is a python module for reading and manipulating Samfiles. It is a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix." diff --git a/recipes/pysamstats/meta.yaml b/recipes/pysamstats/meta.yaml index 3e105e7633a44..84d3f1b4d3106 100644 --- a/recipes/pysamstats/meta.yaml +++ b/recipes/pysamstats/meta.yaml @@ -8,7 +8,7 @@ source: md5: db8a5ad0db0027f55fd954a5510a797a build: - number: 0 + number: 1 # skip: True # [osx or not py35 or not py27] requirements: @@ -16,7 +16,7 @@ requirements: - python - cython - pysam >=0.11 - - zlib + - zlib {{CONDA_ZLIB}}* - gcc - numpy - pytables @@ -25,7 +25,7 @@ requirements: run: - python - pysam >=0.11 - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc - numpy - pytables diff --git a/recipes/pytabix/meta.yaml b/recipes/pytabix/meta.yaml index eb9b1b2a6d85d..dca0bbef11a5d 100644 --- a/recipes/pytabix/meta.yaml +++ b/recipes/pytabix/meta.yaml @@ -3,7 +3,7 @@ package: version: 0.0.2 build: - number: 2 + number: 3 skip: True # [osx] source: @@ -15,11 +15,11 @@ requirements: build: - python - setuptools - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/pythonnet/meta.yaml b/recipes/pythonnet/meta.yaml index 1141656de4d1d..a71485c9f2590 100644 --- a/recipes/pythonnet/meta.yaml +++ b/recipes/pythonnet/meta.yaml @@ -18,7 +18,7 @@ requirements: - ca-certificates - mono - clangdev - - zlib 1.2.11 + - zlib {{CONDA_ZLIB}}* - setuptools - sqlite 3.20.* - readline diff --git a/recipes/r-spp/meta.yaml b/recipes/r-spp/meta.yaml index 4a08089c65ec5..51223d06ab818 100644 --- a/recipes/r-spp/meta.yaml +++ b/recipes/r-spp/meta.yaml @@ -10,7 +10,7 @@ source: - Makevars.patch # [osx] build: - number: 0 + number: 1 string: r_{{CONDA_R}}_boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} # This is required to make R link correctly on Linux. @@ -26,7 +26,7 @@ requirements: - bioconductor-rsamtools - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 run: @@ -35,7 +35,7 @@ requirements: - r-catools - bioconductor-rsamtools - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - bzip2 test: diff --git a/recipes/racon/meta.yaml b/recipes/racon/meta.yaml index 4e36c7350c961..e5047c555cd42 100644 --- a/recipes/racon/meta.yaml +++ b/recipes/racon/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 source: fn: {{ name|lower }}_{{ version }}.tar.gz diff --git a/recipes/rascaf/meta.yaml b/recipes/rascaf/meta.yaml index 93e3cfacaa9dc..5b890ec952d1b 100644 --- a/recipes/rascaf/meta.yaml +++ b/recipes/rascaf/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 script: "mkdir -p $PREFIX/bin; make; mv *.pl $PREFIX/bin; mv rascaf $PREFIX/bin; mv rascaf-join $PREFIX/bin" source: @@ -16,13 +16,13 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/razers3/meta.yaml b/recipes/razers3/meta.yaml index dcb9b305da0e7..36296077d811d 100644 --- a/recipes/razers3/meta.yaml +++ b/recipes/razers3/meta.yaml @@ -8,7 +8,7 @@ source: sha256: df083d5939d7e73fd00bbc6bb291ac7ea7b8d446cf89a9758fdffdc0eca9ec1c build: - number: 0 + number: 1 skip: True # [osx] requirements: diff --git a/recipes/reaper/meta.yaml b/recipes/reaper/meta.yaml index 52d0ead6f76b1..5f0fb19f39476 100644 --- a/recipes/reaper/meta.yaml +++ b/recipes/reaper/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version|replace("-", ".") }} build: - number: 0 + number: 1 source: fn: reaper-{{ version }}.tgz diff --git a/recipes/rgi/3.1.1/meta.yaml b/recipes/rgi/3.1.1/meta.yaml index 8f0229ba90c37..a83c1adcefbf9 100644 --- a/recipes/rgi/3.1.1/meta.yaml +++ b/recipes/rgi/3.1.1/meta.yaml @@ -13,7 +13,7 @@ source: build: skip: True # [py3k] - number: 1 + number: 2 requirements: build: @@ -22,14 +22,14 @@ requirements: - six >=1.7.0 - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - blast - biopython - six >=1.7.0 - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - prodigal test: diff --git a/recipes/rgi/3.1.2/meta.yaml b/recipes/rgi/3.1.2/meta.yaml index 82221bf06d85c..aeeb663e7bee6 100644 --- a/recipes/rgi/3.1.2/meta.yaml +++ b/recipes/rgi/3.1.2/meta.yaml @@ -13,7 +13,7 @@ source: build: skip: True # [py3k] - number: 1 + number: 2 # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. requirements: @@ -23,14 +23,14 @@ requirements: - six >=1.7.0 - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - blast - biopython - six >=1.7.0 - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - prodigal - diamond >=0.8.24.86 diff --git a/recipes/rgi/3.2.0/meta.yaml b/recipes/rgi/3.2.0/meta.yaml index 3e2700ef3cb4c..e4b30607c121b 100644 --- a/recipes/rgi/3.2.0/meta.yaml +++ b/recipes/rgi/3.2.0/meta.yaml @@ -13,7 +13,7 @@ source: build: skip: True # [py3k] - number: 1 + number: 2 # We pin on gcc version to avoid gcc-5 dual ABI issues depending on boost. requirements: @@ -23,14 +23,14 @@ requirements: - six >=1.7.0 - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - blast - biopython - six >=1.7.0 - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - prodigal - diamond >=0.8.24.86 diff --git a/recipes/rgi/3.2.1/meta.yaml b/recipes/rgi/3.2.1/meta.yaml index 80f0a098e88d3..99502911fe5fb 100644 --- a/recipes/rgi/3.2.1/meta.yaml +++ b/recipes/rgi/3.2.1/meta.yaml @@ -13,7 +13,7 @@ source: build: skip: True # [py3k] - number: 2 + number: 3 requirements: build: @@ -22,14 +22,14 @@ requirements: - six >=1.7.0 - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - python - blast - biopython - six >=1.7.0 - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - prodigal - diamond >=0.8.24.86 diff --git a/recipes/rmblast/meta.yaml b/recipes/rmblast/meta.yaml index 96929bb473373..641823ef877d0 100644 --- a/recipes/rmblast/meta.yaml +++ b/recipes/rmblast/meta.yaml @@ -10,7 +10,7 @@ source: md5: 421c5ddf2c425800d934562c965e8706 # [osx] build: - number: 2 + number: 3 requirements: build: diff --git a/recipes/rnalien/meta.yaml b/recipes/rnalien/meta.yaml index 0a8497598f3cf..fd77199f5791e 100644 --- a/recipes/rnalien/meta.yaml +++ b/recipes/rnalien/meta.yaml @@ -12,14 +12,14 @@ source: md5: {{ md5 }} build: - number: 3 + number: 4 skip: True # [osx] requirements: build: - stack >=1.3.2 - gmp - - zlib + - zlib {{CONDA_ZLIB}}* - perl run: @@ -31,7 +31,7 @@ requirements: - gmp - perl - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* - openssl test: diff --git a/recipes/rnftools/0.3.0.2/meta.yaml b/recipes/rnftools/0.3.0.2/meta.yaml index f4b24a1cf6025..bea766da3ff59 100644 --- a/recipes/rnftools/0.3.0.2/meta.yaml +++ b/recipes/rnftools/0.3.0.2/meta.yaml @@ -25,7 +25,6 @@ requirements: - python - samtools - pysam - - zlib - wgsim - dwgsim - art @@ -33,6 +32,7 @@ requirements: - curesim - snakemake - argparse + test: commands: - rnftools -h diff --git a/recipes/rnftools/0.3.1.0/meta.yaml b/recipes/rnftools/0.3.1.0/meta.yaml index 0f07edf6cede7..1cb0bfc189915 100644 --- a/recipes/rnftools/0.3.1.0/meta.yaml +++ b/recipes/rnftools/0.3.1.0/meta.yaml @@ -26,7 +26,6 @@ requirements: - python - samtools - pysam - - zlib - wgsim - dwgsim - art diff --git a/recipes/rnftools/0.3.1.1/meta.yaml b/recipes/rnftools/0.3.1.1/meta.yaml index 509cfc2df217d..e89d855bc0795 100644 --- a/recipes/rnftools/0.3.1.1/meta.yaml +++ b/recipes/rnftools/0.3.1.1/meta.yaml @@ -25,7 +25,6 @@ requirements: - python - samtools - pysam - - zlib - wgsim - dwgsim - art diff --git a/recipes/rnftools/meta.yaml b/recipes/rnftools/meta.yaml index 9a3fd10e26d31..b5848cd25276f 100644 --- a/recipes/rnftools/meta.yaml +++ b/recipes/rnftools/meta.yaml @@ -25,7 +25,6 @@ requirements: - python - samtools - pysam - - zlib - wgsim - dwgsim - art diff --git a/recipes/ropebwt2/meta.yaml b/recipes/ropebwt2/meta.yaml index 1194efd691581..87c558681be6c 100644 --- a/recipes/ropebwt2/meta.yaml +++ b/recipes/ropebwt2/meta.yaml @@ -3,7 +3,7 @@ package: version: "r187" build: - number: 1 + number: 2 source: fn: ropebwt2_r187.tar.gz @@ -14,12 +14,12 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - llvm - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/rseg/meta.yaml b/recipes/rseg/meta.yaml index 1eb08f92ee8ae..053ee9964f740 100644 --- a/recipes/rseg/meta.yaml +++ b/recipes/rseg/meta.yaml @@ -15,12 +15,12 @@ build: requirements: build: - - zlib - - gcc + - zlib {{CONDA_ZLIB}}* + - gcc run: - - zlib - - libgcc + - zlib {{CONDA_ZLIB}}* + - libgcc test: commands: diff --git a/recipes/rsem/meta.yaml b/recipes/rsem/meta.yaml index 7e79614b2d4f6..fd10002b0d3e5 100644 --- a/recipes/rsem/meta.yaml +++ b/recipes/rsem/meta.yaml @@ -15,7 +15,7 @@ build: rpaths: - lib/R/lib/ - lib/ - number: 2 + number: 3 skip: False string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} diff --git a/recipes/ruby/1.9/meta.yaml b/recipes/ruby/1.9/meta.yaml index 0209b317ac343..978f9e70de17e 100644 --- a/recipes/ruby/1.9/meta.yaml +++ b/recipes/ruby/1.9/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 skip: True # [osx] # Based on channel tswicegood @@ -26,9 +26,9 @@ requirements: - readline ==6.2 - yaml - openssl 1.0.1g - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* about: home: https://www.ruby-lang.org/ diff --git a/recipes/ruby/2.0/meta.yaml b/recipes/ruby/2.0/meta.yaml index e1e81b4f4d26c..1c8a0eea9d5ee 100644 --- a/recipes/ruby/2.0/meta.yaml +++ b/recipes/ruby/2.0/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 skip: True # [osx] # Based on channel tswicegood @@ -26,9 +26,9 @@ requirements: - readline ==6.2 - yaml - openssl 1.0.1g - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* about: home: https://www.ruby-lang.org/ diff --git a/recipes/ruby/2.1.7/meta.yaml b/recipes/ruby/2.1.7/meta.yaml index cc57ae00ba661..b137ed92d4086 100644 --- a/recipes/ruby/2.1.7/meta.yaml +++ b/recipes/ruby/2.1.7/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 skip: True # [osx] # Based on channel tswicegood @@ -26,9 +26,9 @@ requirements: - readline ==6.2 - yaml - openssl 1.0.1g - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* about: home: https://www.ruby-lang.org/ diff --git a/recipes/ruby/meta.yaml b/recipes/ruby/meta.yaml index b352c8958c760..426ed7f00bda5 100644 --- a/recipes/ruby/meta.yaml +++ b/recipes/ruby/meta.yaml @@ -3,7 +3,7 @@ package: version: 2.2.3 build: - number: 1 + number: 2 source: fn: ruby-2.2.3.tar.gz @@ -16,7 +16,7 @@ requirements: - openssl 1.0.* - readline 6.2* - yaml - - zlib 1.2.* + - zlib {{CONDA_ZLIB}}* - gmp >=5.0.1,<7 - gcc # [linux] - llvm # [osx] @@ -27,7 +27,7 @@ requirements: - readline 6.2* - yaml - gmp >=5.0.1,<7 - - zlib 1.2.* + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/rust-bio-tools/meta.yaml b/recipes/rust-bio-tools/meta.yaml index af7caa917ef06..e4a4e55f99270 100644 --- a/recipes/rust-bio-tools/meta.yaml +++ b/recipes/rust-bio-tools/meta.yaml @@ -5,7 +5,7 @@ package: version: {{version}} build: - number: 0 + number: 1 skip: true # [osx] source: diff --git a/recipes/rust-overlaps/meta.yaml b/recipes/rust-overlaps/meta.yaml index de0e16a1eab18..16d8e31507a12 100644 --- a/recipes/rust-overlaps/meta.yaml +++ b/recipes/rust-overlaps/meta.yaml @@ -5,7 +5,7 @@ package: version: {{version}} build: - number: 0 + number: 1 skip: True # [osx] source: @@ -17,9 +17,9 @@ requirements: build: - rust >=1.18.0 - gcc 4.8.2 - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc test: diff --git a/recipes/salmon/meta.yaml b/recipes/salmon/meta.yaml index 2bf5581c82a37..eaf02f98ef365 100644 --- a/recipes/salmon/meta.yaml +++ b/recipes/salmon/meta.yaml @@ -2,7 +2,7 @@ {% set llvm_version = "4.0.0" %} build: - number: 0 + number: 1 # OSX failing due to libary issues even though shipping with Salmon binary # dyld: Library not loaded: /usr/local/opt/tbb/lib/libtbbmalloc_proxy.dylib # https://travis-ci.org/bioconda/bioconda-recipes/jobs/211785820#L295 diff --git a/recipes/samtools/0.1.12/meta.yaml b/recipes/samtools/0.1.12/meta.yaml index fb87eb20dbb34..11736fc757bd7 100644 --- a/recipes/samtools/0.1.12/meta.yaml +++ b/recipes/samtools/0.1.12/meta.yaml @@ -3,7 +3,7 @@ about: license: MIT summary: Tools for dealing with SAM and BAM files build: - number: 1 + number: 2 package: name: samtools version: 0.1.12 diff --git a/recipes/samtools/0.1.13/meta.yaml b/recipes/samtools/0.1.13/meta.yaml index 8083dd777427f..c14f192e70f9a 100644 --- a/recipes/samtools/0.1.13/meta.yaml +++ b/recipes/samtools/0.1.13/meta.yaml @@ -3,7 +3,7 @@ about: license: MIT summary: Tools for dealing with SAM and BAM files build: - number: 0 + number: 1 package: name: samtools version: 0.1.13 diff --git a/recipes/samtools/0.1.14/meta.yaml b/recipes/samtools/0.1.14/meta.yaml index cc831572982bb..cd291f7d48831 100644 --- a/recipes/samtools/0.1.14/meta.yaml +++ b/recipes/samtools/0.1.14/meta.yaml @@ -3,7 +3,7 @@ about: license: MIT summary: Tools for dealing with SAM and BAM files build: - number: 0 + number: 1 package: name: samtools version: 0.1.14 diff --git a/recipes/samtools/0.1.17/meta.yaml b/recipes/samtools/0.1.17/meta.yaml index d858639397806..76cefded5d8bf 100644 --- a/recipes/samtools/0.1.17/meta.yaml +++ b/recipes/samtools/0.1.17/meta.yaml @@ -6,10 +6,10 @@ requirements: build: - gcc - pkg-config - - zlib + - zlib {{CONDA_ZLIB}}* run: - pkg-config - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: samtools-0.1.17.tar.bz2 @@ -22,7 +22,7 @@ source: - sources.patch build: - number: 0 + number: 1 about: home: http://samtools.sourceforge.net/ diff --git a/recipes/samtools/0.1.19/meta.yaml b/recipes/samtools/0.1.19/meta.yaml index e548d13bbbba8..6ef1537b5abc8 100644 --- a/recipes/samtools/0.1.19/meta.yaml +++ b/recipes/samtools/0.1.19/meta.yaml @@ -3,7 +3,7 @@ about: license: MIT summary: Tools for dealing with SAM and BAM files build: - number: 2 + number: 3 package: name: samtools version: 0.1.19 @@ -12,11 +12,11 @@ requirements: - gcc # [not osx] - llvm # [osx] - ncurses - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - ncurses - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: samtools-0.1.19.tar.bz2 sha256: d080c9d356e5f0ad334007e4461cbcee3c4ca97b8a7a5a48c44883cf9dee63d4 diff --git a/recipes/samtools/1.0/meta.yaml b/recipes/samtools/1.0/meta.yaml index 4c5f571272270..0d9d798ac54b5 100644 --- a/recipes/samtools/1.0/meta.yaml +++ b/recipes/samtools/1.0/meta.yaml @@ -2,22 +2,27 @@ about: home: https://github.com/samtools/samtools license: MIT summary: Tools for dealing with SAM, BAM and CRAM files + build: - number: 0 + number: 1 + package: name: samtools version: '1.0' + requirements: build: - - ncurses ==5.9 - - zlib ==1.2.8 + - ncurses {{CONDA_NCURSES}}* + - zlib {{CONDA_ZLIB}}* run: - - ncurses ==5.9 - - zlib ==1.2.8 + - ncurses {{CONDA_NCURSES}}* + - zlib {{CONDA_ZLIB}}* + source: fn: samtools-1.0.tar.bz2 sha256: 7340b843663c3f54a902a06f2f73c68198f3a62d29a2ed20671139957f7fd7c0 url: http://downloads.sourceforge.net/project/samtools/samtools/1.0/samtools-1.0.tar.bz2 + test: commands: - "samtools view --help 2>&1 | grep Notes > /dev/null" diff --git a/recipes/samtools/1.1/meta.yaml b/recipes/samtools/1.1/meta.yaml index fb2d10ed74c60..33834190010ed 100644 --- a/recipes/samtools/1.1/meta.yaml +++ b/recipes/samtools/1.1/meta.yaml @@ -3,17 +3,17 @@ about: license: MIT summary: Tools for dealing with SAM, BAM and CRAM files build: - number: 0 + number: 1 package: name: samtools version: '1.1' requirements: build: - - ncurses ==5.9 - - zlib ==1.2.8 + - ncurses {{CONDA_NCURSES}}* + - zlib {{CONDA_ZLIB}}* run: - - ncurses ==5.9 - - zlib ==1.2.8 + - ncurses {{CONDA_NCURSES}}* + - zlib {{CONDA_ZLIB}}* source: fn: samtools-1.1.tar.bz2 sha256: c24d26c303153d72b5bf3cc11f72c6c375a4ca1140cc485648c8c5473414b7f8 diff --git a/recipes/samtools/meta.yaml b/recipes/samtools/meta.yaml index 9f40d9385858b..87e298055c36e 100644 --- a/recipes/samtools/meta.yaml +++ b/recipes/samtools/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: samtools-{{ version }}.tar.bz2 diff --git a/recipes/segemehl/meta.yaml b/recipes/segemehl/meta.yaml index 46f858d770d88..34f63217f5a13 100644 --- a/recipes/segemehl/meta.yaml +++ b/recipes/segemehl/meta.yaml @@ -7,7 +7,7 @@ about: summary: Short read mapping with gaps build: - number: 2 + number: 3 source: fn: segemehl_0_2_0.tar.gz @@ -18,11 +18,11 @@ requirements: build: - llvm # [osx] - gcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* test: diff --git a/recipes/selectsequencesfrommsa/meta.yaml b/recipes/selectsequencesfrommsa/meta.yaml index 4355107875608..ed8646794a0dd 100644 --- a/recipes/selectsequencesfrommsa/meta.yaml +++ b/recipes/selectsequencesfrommsa/meta.yaml @@ -12,21 +12,21 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: True # [osx] requirements: build: - stack >=1.3.2 - gmp - - zlib + - zlib {{CONDA_ZLIB}}* - perl run: - gmp - perl - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/selscan/meta.yaml b/recipes/selscan/meta.yaml index b6013d0ea4528..746f8505a09f4 100644 --- a/recipes/selscan/meta.yaml +++ b/recipes/selscan/meta.yaml @@ -2,7 +2,7 @@ package: name: selscan version: "1.1.0b" build: - number: 0 + number: 1 skip: False source: fn: 1.1.0b.zip @@ -16,12 +16,12 @@ requirements: - gcc #- openblas #- gsl - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc #- openblas #- gsl - - zlib + - zlib {{CONDA_ZLIB}}* #- perl-threaded test: commands: diff --git a/recipes/sentieon/meta.yaml b/recipes/sentieon/meta.yaml index 2975acf6947bf..002a96ca0be19 100644 --- a/recipes/sentieon/meta.yaml +++ b/recipes/sentieon/meta.yaml @@ -17,7 +17,7 @@ source: - bwa_symlinks.patch build: - number: 1 + number: 2 # Currently failing on OSX when copying and fixing shared libraries # included with sentieon package. I don't understand problem: # https://travis-ci.org/bioconda/bioconda-recipes/jobs/141822657 diff --git a/recipes/seqan_tcoffee/meta.yaml b/recipes/seqan_tcoffee/meta.yaml index 9f07323bd1c3c..ee6ff19b11973 100755 --- a/recipes/seqan_tcoffee/meta.yaml +++ b/recipes/seqan_tcoffee/meta.yaml @@ -8,7 +8,7 @@ source: sha256: df083d5939d7e73fd00bbc6bb291ac7ea7b8d446cf89a9758fdffdc0eca9ec1c build: - number: 0 + number: 1 skip: True # [osx] requirements: diff --git a/recipes/seqprep/1.1/meta.yaml b/recipes/seqprep/1.1/meta.yaml index f4088bfe2d66b..f7e8ccac74efb 100644 --- a/recipes/seqprep/1.1/meta.yaml +++ b/recipes/seqprep/1.1/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 skip: True # [osx] package: @@ -16,9 +16,9 @@ source: requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/seqprep/meta.yaml b/recipes/seqprep/meta.yaml index 48cc394e09c46..c7ee37bfbf6e2 100644 --- a/recipes/seqprep/meta.yaml +++ b/recipes/seqprep/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 skip: True # [osx] source: @@ -20,9 +20,9 @@ source: requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/seqtk/meta.yaml b/recipes/seqtk/meta.yaml index b0243201d6464..1e617b5e68cc1 100644 --- a/recipes/seqtk/meta.yaml +++ b/recipes/seqtk/meta.yaml @@ -8,15 +8,15 @@ source: md5: 255ffe05bf2f073dc57abcff97f11a37 build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* about: diff --git a/recipes/seqtk/r82/meta.yaml b/recipes/seqtk/r82/meta.yaml index 698ff6722eb92..6bc15852e4bfe 100644 --- a/recipes/seqtk/r82/meta.yaml +++ b/recipes/seqtk/r82/meta.yaml @@ -8,17 +8,17 @@ source: sha256: dd4b54a3ba57279659153204aa59aa1d5efe4d307549ac7b8e93b67eb9d3248f build: - number: 0 + number: 1 skip: False requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* about: home: https://github.com/lh3/seqtk diff --git a/recipes/sga/meta.yaml b/recipes/sga/meta.yaml index 545306e4ad96c..b6527db6b30a3 100644 --- a/recipes/sga/meta.yaml +++ b/recipes/sga/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 1b18996e6ec47985bc4889a8cbc3cd4dd3a8c7d385ae9f450bd474e36342558b build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/shorah/1.0.0/meta.yaml b/recipes/shorah/1.0.0/meta.yaml index ecc59977468a5..32e0e8b780267 100644 --- a/recipes/shorah/1.0.0/meta.yaml +++ b/recipes/shorah/1.0.0/meta.yaml @@ -4,7 +4,7 @@ package: build: skip: True # [py3k] - number: 0 + number: 1 source: fn: shorah-1.0.0.tar.bz2 @@ -13,17 +13,17 @@ source: requirements: build: - - gcc # [linux] - - llvm # [osx] - - python - - gsl - - zlib + - gcc # [linux] + - llvm # [osx] + - python + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* run: - - python - - samtools - - biopython - - gsl - - zlib + - python + - samtools + - biopython + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* about: home: https://github.com/cbg-ethz/shorah diff --git a/recipes/shorah/1.1.0/meta.yaml b/recipes/shorah/1.1.0/meta.yaml index af7ebe279f9be..5a42bf9c1c0ef 100644 --- a/recipes/shorah/1.1.0/meta.yaml +++ b/recipes/shorah/1.1.0/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.1.0" build: - number: 0 + number: 1 source: fn: shorah-1.1.0.tar.bz2 @@ -12,18 +12,18 @@ source: requirements: build: - - gcc # [linux] - - llvm # [osx] - - python - - gsl - - zlib + - gcc # [linux] + - llvm # [osx] + - python + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* run: - - python - - samtools - - biopython - - numpy - - gsl - - zlib + - python + - samtools + - biopython + - numpy + - gsl {{CONDA_GSL}}* + - zlib {{CONDA_ZLIB}}* about: home: https://github.com/cbg-ethz/shorah diff --git a/recipes/shorah/1.1.2/meta.yaml b/recipes/shorah/1.1.2/meta.yaml index 5c8ee8670b292..c5eb1bce0fcb8 100644 --- a/recipes/shorah/1.1.2/meta.yaml +++ b/recipes/shorah/1.1.2/meta.yaml @@ -13,7 +13,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name }}-{{ version }}.tar.bz2 diff --git a/recipes/short-read-connector/meta.yaml b/recipes/short-read-connector/meta.yaml index 007727409912b..e9a4868164757 100644 --- a/recipes/short-read-connector/meta.yaml +++ b/recipes/short-read-connector/meta.yaml @@ -8,7 +8,7 @@ source: md5: "dfb9ea38a562df02c5046574d1bba1bb" build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/sickle-trim/meta.yaml b/recipes/sickle-trim/meta.yaml index 02118cc7fd308..31a849e690512 100644 --- a/recipes/sickle-trim/meta.yaml +++ b/recipes/sickle-trim/meta.yaml @@ -11,13 +11,13 @@ source: sha256: {{ sha256 }} build: - number: 1 + number: 2 requirements: build: - - zlib 1.2.8 + - zlib {{CONDA_ZLIB}}* run: - - zlib 1.2.8 + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/slang/meta.yaml b/recipes/slang/meta.yaml index 5023004aa34c2..a8355eb08ec3d 100644 --- a/recipes/slang/meta.yaml +++ b/recipes/slang/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 skip: True # [osx] string: "ncurses{{CONDA_NCURSES}}_{{PKG_BUILDNUM}}" @@ -17,12 +17,12 @@ requirements: - readline - ncurses {{CONDA_NCURSES}}* - libpng - - zlib + - zlib {{CONDA_ZLIB}}* run: - readline - ncurses {{CONDA_NCURSES}}* - libpng - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/slclust/meta.yaml b/recipes/slclust/meta.yaml index 461259279d43e..3f9e0619d3db6 100644 --- a/recipes/slclust/meta.yaml +++ b/recipes/slclust/meta.yaml @@ -8,16 +8,16 @@ source: sha256: 9e21b65288e7fc35647721380cfedffd68608e164b4240c692c511c18c1620f8 build: - number: 1 + number: 2 requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/smalt/meta.yaml b/recipes/smalt/meta.yaml index ffb73d966cb46..84138eb593fc6 100644 --- a/recipes/smalt/meta.yaml +++ b/recipes/smalt/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 package: name: smalt @@ -15,12 +15,12 @@ requirements: - libtool - pkg-config - bambamc - - zlib + - zlib {{CONDA_ZLIB}}* - python >=2.6,<3 # used by 'make check' - samtools # used by 'make check' run: - bambamc - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc test: commands: diff --git a/recipes/sniffles/meta.yaml b/recipes/sniffles/meta.yaml index ce9fe528e4e05..54bb4e57b2602 100644 --- a/recipes/sniffles/meta.yaml +++ b/recipes/sniffles/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ hash }} build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/snippy/3.0/meta.yaml b/recipes/snippy/3.0/meta.yaml index faed7008b5fc3..3dd1b2a948166 100644 --- a/recipes/snippy/3.0/meta.yaml +++ b/recipes/snippy/3.0/meta.yaml @@ -13,7 +13,7 @@ build: requirements: build: - - perl-threaded + - perl - perl-bioperl - perl-app-cpanminus - perl-module-build @@ -25,7 +25,7 @@ requirements: - vcftools - snpeff run: - - perl-threaded + - perl - perl-bioperl - bwa - samtools diff --git a/recipes/snoscan/meta.yaml b/recipes/snoscan/meta.yaml index 9208b69f562bb..8d49eb6cd6d81 100644 --- a/recipes/snoscan/meta.yaml +++ b/recipes/snoscan/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -21,14 +21,14 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-app-cpanminus - perl-module-build run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl test: diff --git a/recipes/snp-dists/meta.yaml b/recipes/snp-dists/meta.yaml index 4835fb669cb66..9896fad623bb7 100644 --- a/recipes/snp-dists/meta.yaml +++ b/recipes/snp-dists/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name }}_v{{ version }}.tar.gz diff --git a/recipes/snp-sites/meta.yaml b/recipes/snp-sites/meta.yaml index 29268e1d207fa..9537c1f1ee883 100644 --- a/recipes/snp-sites/meta.yaml +++ b/recipes/snp-sites/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name|lower }}_{{ version }}.tar.gz @@ -22,11 +22,11 @@ requirements: - automake - autoconf - libtool - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/soapdenovo-trans/meta.yaml b/recipes/soapdenovo-trans/meta.yaml index 3775ca41bd7d7..d0d62490ba113 100644 --- a/recipes/soapdenovo-trans/meta.yaml +++ b/recipes/soapdenovo-trans/meta.yaml @@ -10,7 +10,7 @@ source: - makefile.patch build: - number: 0 + number: 1 # The source package includes a static library with ELF object files, which is linked during compilation. # The C source files aren't included, so rebuilding in Mach-O format isn't possible. skip: True # [osx] @@ -19,11 +19,11 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/soapdenovo2-errorcorrection/meta.yaml b/recipes/soapdenovo2-errorcorrection/meta.yaml index 6378559a4d856..4607ba60692ba 100644 --- a/recipes/soapdenovo2-errorcorrection/meta.yaml +++ b/recipes/soapdenovo2-errorcorrection/meta.yaml @@ -4,20 +4,20 @@ about: summary: 'Error correction for soapdenovo2.' build: - number: 0 + number: 1 package: name: soapdenovo2-errorcorrection version: '2.0' requirements: - build: - - gcc # [linux] - - llvm # [osx] - - zlib - run: - - libgcc # [linux] - - zlib + build: + - gcc # [linux] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* + run: + - libgcc # [linux] + - zlib {{CONDA_ZLIB}}* source: fn: errorcorrection.tar.gz diff --git a/recipes/soapdenovo2-gapcloser/meta.yaml b/recipes/soapdenovo2-gapcloser/meta.yaml index 1b3e0fd98a866..d1fb1c7c11a3d 100644 --- a/recipes/soapdenovo2-gapcloser/meta.yaml +++ b/recipes/soapdenovo2-gapcloser/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'a tool named GapCloser for SOAPdenovo.' build: - number: 0 + number: 1 package: name: soapdenovo2-gapcloser @@ -14,10 +14,10 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: gapcloser.tar.gz diff --git a/recipes/soapdenovo2-prepare/meta.yaml b/recipes/soapdenovo2-prepare/meta.yaml index 2bcfb7259605c..8a4b45a9aa59f 100644 --- a/recipes/soapdenovo2-prepare/meta.yaml +++ b/recipes/soapdenovo2-prepare/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'SoapDenovo2 Data prepare module using assembled contig to do scaffold assembly' build: - number: 0 + number: 1 package: name: soapdenovo2-prepare @@ -14,10 +14,10 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: soapdenovo2-prepare.tar.gz diff --git a/recipes/soapdenovo2/meta.yaml b/recipes/soapdenovo2/meta.yaml index 5fd1e0a02075e..3453aa9439d1e 100644 --- a/recipes/soapdenovo2/meta.yaml +++ b/recipes/soapdenovo2/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes.' build: - number: 0 + number: 1 package: name: soapdenovo2 @@ -14,11 +14,11 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* - samtools ==0.1.19 run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - samtools ==0.1.19 source: diff --git a/recipes/soapec/meta.yaml b/recipes/soapec/meta.yaml index 98de2f124e787..e546e9e161ea2 100644 --- a/recipes/soapec/meta.yaml +++ b/recipes/soapec/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'a correction tool for SOAPdenovo' build: - number: 1 + number: 2 skip: True # [osx] package: @@ -15,10 +15,10 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: soapec_v2.03.tar.gz url: https://sourceforge.net/projects/soapdenovo2/files/ErrorCorrection/SOAPec_src_v2.03.tgz/download diff --git a/recipes/soapsplice/meta.yaml b/recipes/soapsplice/meta.yaml index 3b05b6d60dbbc..c13b230bea2ee 100644 --- a/recipes/soapsplice/meta.yaml +++ b/recipes/soapsplice/meta.yaml @@ -11,13 +11,13 @@ source: build: skip: True # [osx] - number: 0 + number: 1 requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/somatic-sniper/meta.yaml b/recipes/somatic-sniper/meta.yaml index 0955d58dde577..b662df03fa700 100644 --- a/recipes/somatic-sniper/meta.yaml +++ b/recipes/somatic-sniper/meta.yaml @@ -7,16 +7,16 @@ source: url: https://github.com/genome/somatic-sniper/archive/v1.0.5.0.tar.gz build: - number: 0 + number: 1 skip: False requirements: build: - cmake - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/sortmerna/2.0/meta.yaml b/recipes/sortmerna/2.0/meta.yaml index 49438df8e4ed2..c912fe4ab47ac 100644 --- a/recipes/sortmerna/2.0/meta.yaml +++ b/recipes/sortmerna/2.0/meta.yaml @@ -8,16 +8,16 @@ source: md5: f233f7734105c75c14bd4c2fa4e2aefe build: - number: 1 + number: 2 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/sortmerna/2.1b/meta.yaml b/recipes/sortmerna/2.1b/meta.yaml index da06e04461236..e857cb559ae9f 100644 --- a/recipes/sortmerna/2.1b/meta.yaml +++ b/recipes/sortmerna/2.1b/meta.yaml @@ -8,16 +8,16 @@ source: sha256: b3d122776c323813971b35991cda21a2c2f3ce817daba68a4c4e09d4367c0abe build: - number: 1 + number: 2 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/spades/meta.yaml b/recipes/spades/meta.yaml index a108cf9d3a712..8056461ea18a5 100644 --- a/recipes/spades/meta.yaml +++ b/recipes/spades/meta.yaml @@ -13,7 +13,7 @@ source: sha256: 3ab85d86bf7d595bd8adf11c971f5d258bbbd2574b7c1703b16d6639a725b474 # [linux] build: - number: 0 + number: 1 string: py{{CONDA_PY}}_zlib{{CONDA_ZLIB}}_{{PKG_BUILDNUM}} # [linux] requirements: @@ -21,13 +21,13 @@ requirements: - gcc >=4.8.2 # [linux] - cmake >=2.8.12 # [linux] - zlib {{CONDA_ZLIB}}* # [linux] - - bzip2 1.0.* # [linux] + - bzip2 {{CONDA_BZIP2}}* # [linux] run: - python - libgcc # [linux] - zlib {{CONDA_ZLIB}}* # [linux] - - bzip2 1.0.* # [linux] + - bzip2 {{CONDA_BZIP2}}* # [linux] test: commands: diff --git a/recipes/sparc/meta.yaml b/recipes/sparc/meta.yaml index fdc068a02bcaf..79067cbdcd6f7 100644 --- a/recipes/sparc/meta.yaml +++ b/recipes/sparc/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 script: "mkdir -p $PREFIX/bin; g++ -O3 -o Sparc *.cpp; mv Sparc $PREFIX/bin" source: @@ -15,13 +15,13 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/sparseassembler/meta.yaml b/recipes/sparseassembler/meta.yaml index 5cbf76e2bfb2c..85f1d7131b4b2 100644 --- a/recipes/sparseassembler/meta.yaml +++ b/recipes/sparseassembler/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 script: "mkdir -p $PREFIX/bin; g++ -O3 -o SparseAssembler *.cpp; mv SparseAssembler $PREFIX/bin" source: @@ -18,11 +18,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/squeakr/meta.yaml b/recipes/squeakr/meta.yaml index c311794123c93..2763c3f7e3e78 100644 --- a/recipes/squeakr/meta.yaml +++ b/recipes/squeakr/meta.yaml @@ -12,19 +12,19 @@ source: md5 : {{ md5 }} build: - number : 0 + number : 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - bzip2 + - bzip2 {{CONDA_BZIP2}}* - zlib {{CONDA_ZLIB}}* - boost {{CONDA_BOOST}}* - openssl run: - libgcc # [not osx] - - bzip2 + - bzip2 {{CONDA_ZLIB}}* - zlib {{CONDA_ZLIB}}* - boost {{CONDA_BOOST}}* - openssl diff --git a/recipes/stacks/1.40/meta.yaml b/recipes/stacks/1.40/meta.yaml index 61077d93aca50..a2ecc33e78679 100644 --- a/recipes/stacks/1.40/meta.yaml +++ b/recipes/stacks/1.40/meta.yaml @@ -2,7 +2,7 @@ package: name: stacks version: "1.40" build: - number: 1 + number: 2 skip: True # [osx] source: fn: stacks-1.40.tar.gz @@ -11,14 +11,14 @@ source: requirements: build: - gcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - samtools 0.1.19 - sparsehash run: - perl-threaded - velvet - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - samtools 0.1.19 - sparsehash test: diff --git a/recipes/stacks/1.42/meta.yaml b/recipes/stacks/1.42/meta.yaml index 5de67afbd5a0b..4762ef6d4e304 100644 --- a/recipes/stacks/1.42/meta.yaml +++ b/recipes/stacks/1.42/meta.yaml @@ -2,7 +2,7 @@ package: name: stacks version: "1.42" build: - number: 3 + number: 4 skip: True # [osx] source: fn: stacks-1.42.tar.gz @@ -11,13 +11,13 @@ source: requirements: build: - gcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash run: - perl-threaded - velvet - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash test: commands: diff --git a/recipes/stacks/1.43/meta.yaml b/recipes/stacks/1.43/meta.yaml index a294321963c80..4b743ba4e330a 100644 --- a/recipes/stacks/1.43/meta.yaml +++ b/recipes/stacks/1.43/meta.yaml @@ -2,7 +2,7 @@ package: name: stacks version: "1.43" build: - number: 0 + number: 1 skip: True # [osx] source: fn: stacks-1.43.tar.gz @@ -11,13 +11,13 @@ source: requirements: build: - gcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash run: - perl-threaded - velvet - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash test: commands: diff --git a/recipes/stacks/1.44/meta.yaml b/recipes/stacks/1.44/meta.yaml index bcbe01d6a28f7..a0455dab5ea97 100644 --- a/recipes/stacks/1.44/meta.yaml +++ b/recipes/stacks/1.44/meta.yaml @@ -2,7 +2,7 @@ package: name: stacks version: "1.44" build: - number: 1 + number: 2 skip: True # [osx] source: fn: stacks-1.44.tar.gz @@ -11,13 +11,13 @@ source: requirements: build: - gcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash run: - perl - velvet - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* - sparsehash test: commands: diff --git a/recipes/stacks/meta.yaml b/recipes/stacks/meta.yaml index db62c55352ab1..1730e63d87823 100644 --- a/recipes/stacks/meta.yaml +++ b/recipes/stacks/meta.yaml @@ -3,7 +3,7 @@ package: version: "1.47" build: - number: 0 + number: 1 skip: True # [osx] string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} diff --git a/recipes/stride/meta.yaml b/recipes/stride/meta.yaml index 365cb721fd33c..3f3c6820cbb68 100644 --- a/recipes/stride/meta.yaml +++ b/recipes/stride/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 2 + number: 3 skip: True # [osx] source: @@ -24,10 +24,10 @@ requirements: - automake - m4 - perl - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - + - zlib {{CONDA_ZLIB}}* test: commands: - stride 2>&1 | grep "stride" diff --git a/recipes/stringtie/1.0.1/meta.yaml b/recipes/stringtie/1.0.1/meta.yaml index a73a8f02dcfd4..1128dc046bd00 100644 --- a/recipes/stringtie/1.0.1/meta.yaml +++ b/recipes/stringtie/1.0.1/meta.yaml @@ -3,15 +3,16 @@ about: license: Artistic License 2.0 summary: Transcriptome assembly and quantification for RNA-seq build: - number: 0 + number: 1 skip: True # [osx] package: name: stringtie version: 1.0.1 requirements: build: - - zlib - run: [] + - zlib {{CONDA_ZLIB}}* + run: + - zlib {{CONDA_ZLIB}}* source: fn: stringtie-1.0.1.tar.gz sha256: b0750b40214814270f7380d04efa350d57ef781eb67cf6f4cf168040e93fd98f diff --git a/recipes/stringtie/1.2.4/meta.yaml b/recipes/stringtie/1.2.4/meta.yaml index c573133b82536..8cc0c1ede22f9 100644 --- a/recipes/stringtie/1.2.4/meta.yaml +++ b/recipes/stringtie/1.2.4/meta.yaml @@ -3,7 +3,7 @@ about: license: Artistic License 2.0 summary: Transcriptome assembly and quantification for RNA-seq build: - number: 0 + number: 1 skip: True # [osx] package: name: stringtie @@ -12,10 +12,10 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: stringtie-1.2.4.tar.gz sha256: 7fcd64c3ad73816cdb446c5d703a1c46cf828db88871221267532355168b0dc9 diff --git a/recipes/stringtie/1.3.0/meta.yaml b/recipes/stringtie/1.3.0/meta.yaml index 6e05617415ffe..a1412bfd754e4 100644 --- a/recipes/stringtie/1.3.0/meta.yaml +++ b/recipes/stringtie/1.3.0/meta.yaml @@ -4,7 +4,7 @@ about: summary: Transcriptome assembly and quantification for RNA-seq build: - number: 0 + number: 1 package: name: stringtie @@ -14,10 +14,10 @@ requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [linux] - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: stringtie-1.3.0.tar.gz diff --git a/recipes/stringtie/meta.yaml b/recipes/stringtie/meta.yaml index 207a1fe409540..b40e165c452c2 100644 --- a/recipes/stringtie/meta.yaml +++ b/recipes/stringtie/meta.yaml @@ -3,7 +3,7 @@ package: version: 1.3.3 build: - number: 2 + number: 3 requirements: build: diff --git a/recipes/subread/meta.yaml b/recipes/subread/meta.yaml index 763f5f35561da..ba86c60ab808c 100644 --- a/recipes/subread/meta.yaml +++ b/recipes/subread/meta.yaml @@ -7,7 +7,8 @@ package: version: 1.6.0 build: - number: 1 + number: 2 + source: fn: subread-1.6.0-source.tar.gz url: https://downloads.sourceforge.net/project/subread/subread-1.6.0/subread-1.6.0-source.tar.gz diff --git a/recipes/suma_package/meta.yaml b/recipes/suma_package/meta.yaml index d162a85052bb5..233ed43338d0b 100644 --- a/recipes/suma_package/meta.yaml +++ b/recipes/suma_package/meta.yaml @@ -10,14 +10,17 @@ source: - ldflags.patch build: - number: 0 + number: 1 skip: True # [not linux64 or osx] requirements: build: - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/t_coffee/meta.yaml b/recipes/t_coffee/meta.yaml index 75ffc8a3bfb87..88aa85193788b 100644 --- a/recipes/t_coffee/meta.yaml +++ b/recipes/t_coffee/meta.yaml @@ -8,7 +8,7 @@ source: md5: 2e375405c9ebb977adf87c145ca698bb build: - number: 2 + number: 3 skip: True # [osx] entry_points: - t_coffee = t_coffee.__main__:main @@ -18,13 +18,13 @@ requirements: - curl - openssl - python - - zlib + - zlib {{CONDA_ZLIB}}* run: - curl - openssl - - perl-threaded + - perl - python - - zlib + - zlib {{CONDA_ZLIB}}* test: imports: diff --git a/recipes/tabix/0.2.5/meta.yaml b/recipes/tabix/0.2.5/meta.yaml index 77383cfab75b3..027109c1782f6 100644 --- a/recipes/tabix/0.2.5/meta.yaml +++ b/recipes/tabix/0.2.5/meta.yaml @@ -7,15 +7,15 @@ source: sha256: 6ce0da41a7ef82aa34db413602cc7cd11c08d606f36ebba793da41ec402e2f86 build: - number: 0 + number: 1 requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - gcc # [linux] - llvm # [osx] run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/tadarida-d/meta.yaml b/recipes/tadarida-d/meta.yaml index c311d5955c50f..512749da5ee6f 100644 --- a/recipes/tadarida-d/meta.yaml +++ b/recipes/tadarida-d/meta.yaml @@ -12,7 +12,7 @@ source: md5: {{ md5 }} build: - number: 0 + number: 1 skip: True # [osx] requirements: @@ -21,13 +21,13 @@ requirements: - fftw 3.3.4 - libsndfile 1.0.27 - gcc - - zlib + - zlib {{CONDA_ZLIB}}* run: - qt 4.8.7 - fftw 3.3.4 - libsndfile 1.0.27 - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* - xorg-libsm - xorg-libxrender - xorg-libxext diff --git a/recipes/takeabreak/meta.yaml b/recipes/takeabreak/meta.yaml index dde161f6bbe29..0a56b4d3cb98a 100644 --- a/recipes/takeabreak/meta.yaml +++ b/recipes/takeabreak/meta.yaml @@ -8,7 +8,7 @@ source: md5: "9170a6d61f51e53189822df830648fd0" build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/tepid/meta.yaml b/recipes/tepid/meta.yaml index 62da1ea9dad76..0b9d14b32e45a 100644 --- a/recipes/tepid/meta.yaml +++ b/recipes/tepid/meta.yaml @@ -25,7 +25,6 @@ requirements: - bedtools ==2.25.0 run: - libgcc - - zlib - python - pybedtools - numpy ==1.9.2 diff --git a/recipes/tesseract/3.04.01/meta.yaml b/recipes/tesseract/3.04.01/meta.yaml index bab56d65ed8d4..ead1f26ad6a47 100644 --- a/recipes/tesseract/3.04.01/meta.yaml +++ b/recipes/tesseract/3.04.01/meta.yaml @@ -2,7 +2,7 @@ package: name: tesseract version: 3.04.01 build: - number: 0 + number: 1 skip: True # [osx] source: fn: 3.04.01.tar.gz @@ -14,14 +14,14 @@ requirements: - libpng - jpeg - libtiff - - zlib + - zlib {{CONDA_ZLIB}}* - leptonica run: - libgcc # [linux] - libpng - jpeg - libtiff - - zlib + - zlib {{CONDA_ZLIB}}* - leptonica test: commands: diff --git a/recipes/transabyss/meta.yaml b/recipes/transabyss/meta.yaml index db6da4407de66..dff176380e616 100644 --- a/recipes/transabyss/meta.yaml +++ b/recipes/transabyss/meta.yaml @@ -4,7 +4,8 @@ about: summary: 'de novo assembly of RNA-Seq data using ABySS' build: - number: 1 + skip: True # [py3k] + number: 2 package: name: transabyss @@ -12,7 +13,7 @@ package: requirements: build: - - python <3 + - python run: - zlib {{ CONDA_ZLIB }}* - abyss 1.5.2 @@ -20,7 +21,7 @@ requirements: - samtools 1.3.1 - bowtie2 - blat - - python <3 + - python - libiconv source: diff --git a/recipes/transcomb/meta.yaml b/recipes/transcomb/meta.yaml index 42d50be1c9db4..a3b152ecba2ba 100644 --- a/recipes/transcomb/meta.yaml +++ b/recipes/transcomb/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 string: boost{{CONDA_BOOST}}_{{PKG_BUILDNUM}} source: @@ -18,20 +18,20 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - boost {{CONDA_BOOST}}* - - bamtools - - samtools ==0.1.19 - - zlib - - cmake + - gcc # [not osx] + - llvm # [osx] + - boost {{CONDA_BOOST}}* + - bamtools + - samtools ==0.1.19 + - zlib {{CONDA_ZLIB}}* # [linux] + - cmake run: - - libgcc # [not osx] - - zlib - - boost {{CONDA_BOOST}}* - - bamtools - - samtools + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* # [linux] + - boost {{CONDA_BOOST}}* + - bamtools + - samtools test: commands: diff --git a/recipes/transrate-tools/meta.yaml b/recipes/transrate-tools/meta.yaml index ab215a829743c..8ba249cd0f81c 100644 --- a/recipes/transrate-tools/meta.yaml +++ b/recipes/transrate-tools/meta.yaml @@ -4,7 +4,7 @@ package: build: skip: True #[osx] - number: 0 + number: 1 string: {{PKG_BUILDNUM}} source: @@ -17,14 +17,15 @@ requirements: - gcc >=4.8 - libgcc - bamtools - - zlib + - zlib {{CONDA_ZLIB}}* - cmake - make - gnu-wget run: - libgcc - bamtools - - zlib + - zlib {{CONDA_ZLIB}}* + test: commands: - bam-read 2>&1 | grep "bam-read version" > /dev/null diff --git a/recipes/treemix/meta.yaml b/recipes/treemix/meta.yaml index 92d4e76fd808f..a9807a088f3bd 100644 --- a/recipes/treemix/meta.yaml +++ b/recipes/treemix/meta.yaml @@ -3,7 +3,7 @@ package: version: 1.12 build: - number: 0 + number: 1 skip: True # [osx] string: boost{{CONDA_BOOST}}__gsl{{CONDA_GSL}}_{{PKG_BUILDNUM}} @@ -16,13 +16,13 @@ source: requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* - boost {{CONDA_BOOST}}* run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* - gsl {{CONDA_GSL}}* about: diff --git a/recipes/trimadap/meta.yaml b/recipes/trimadap/meta.yaml index 603845c9cc922..14a66b85532f6 100644 --- a/recipes/trimadap/meta.yaml +++ b/recipes/trimadap/meta.yaml @@ -3,7 +3,7 @@ package: version: "r10" build: - number: 0 + number: 1 source: fn: trimadap_r10.tar.gz @@ -12,13 +12,13 @@ source: requirements: build: - - gcc # [not osx] - - llvm # [osx] - - zlib + - gcc # [not osx] + - llvm # [osx] + - zlib {{CONDA_ZLIB}}* run: - - libgcc # [not osx] - - zlib + - libgcc # [not osx] + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/trinity/2.1.1/date.2011_11_26/meta.yaml b/recipes/trinity/2.1.1/date.2011_11_26/meta.yaml index 59c0c1330dd00..df56fa7e430bb 100644 --- a/recipes/trinity/2.1.1/date.2011_11_26/meta.yaml +++ b/recipes/trinity/2.1.1/date.2011_11_26/meta.yaml @@ -3,7 +3,7 @@ about: license: "https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/master/LICENSE.txt" summary: "Trinity assembles transcript sequences from Illumina RNA-Seq data" build: - number: 4 + number: 5 string: ncurses{{CONDA_NCURSES}}_{{PKG_BUILDNUM}} package: name: trinity @@ -18,18 +18,18 @@ source: - samtools_makefile.patch # patch samtools Makefile due to missing curses.h requirements: build: - - perl-threaded + - perl - gcc - java-jdk >=6 - - bzip2 - - zlib + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* run: - - perl-threaded + - perl - libgcc - java-jdk >=6 - - bzip2 - - zlib + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* extra: notes: "Trinity version date.2011_11_26 relies on a custom wrapper script, symlinked to bin/: Trinity-runner.sh. This script changes the current working directory to that of the Trinity.pl perl script before calling Trinity, so relative paths work as expected (particularly for Trinity plugins). All arguments are passed to Trinity.pl (via $@)" diff --git a/recipes/trinity/2.1.1/meta.yaml b/recipes/trinity/2.1.1/meta.yaml index 18551c41f0320..4e7dee195f885 100644 --- a/recipes/trinity/2.1.1/meta.yaml +++ b/recipes/trinity/2.1.1/meta.yaml @@ -3,7 +3,7 @@ about: license: "https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/master/LICENSE.txt" summary: "Trinity assembles transcript sequences from Illumina RNA-Seq data" build: - number: 6 + number: 7 skip: True # [osx] package: name: trinity @@ -14,23 +14,23 @@ source: url: https://github.com/trinityrnaseq/trinityrnaseq/archive/v2.1.1.tar.gz requirements: build: - - perl-threaded - - java-jdk + - perl + - openjdk - trimmomatic - samtools - jellyfish - - htslib + - htslib {{ CONDA_HTSLIB }}* - collectl - fastool - parafly - slclust run: - - perl-threaded - - java-jdk + - perl + - openjdk - trimmomatic - samtools - jellyfish - - htslib + - htslib {{ CONDA_HTSLIB }}* - collectl - fastool - parafly diff --git a/recipes/trinity/2.2.0/meta.yaml b/recipes/trinity/2.2.0/meta.yaml index 9425f4d98dd71..8fe23ccb55376 100644 --- a/recipes/trinity/2.2.0/meta.yaml +++ b/recipes/trinity/2.2.0/meta.yaml @@ -4,7 +4,7 @@ about: summary: 'Trinity RNA-Seq de novo transcriptome assembly' build: - number: 6 + number: 7 skip: True # [osx] @@ -20,7 +20,7 @@ requirements: - perl-module-build - perl-file-find-rule - java-jdk - - zlib + - zlib {{CONDA_ZLIB}}* - jellyfish 2.2.3 - samtools 0.1.19 - trimmomatic @@ -33,7 +33,7 @@ requirements: - perl-module-build - perl-file-find-rule - java-jdk - - zlib + - zlib {{CONDA_ZLIB}}* - jellyfish 2.2.3 - samtools 0.1.19 - trimmomatic diff --git a/recipes/trinity/2.3.2/meta.yaml b/recipes/trinity/2.3.2/meta.yaml index 8e173e98c3ef2..c4c87b2f1957a 100644 --- a/recipes/trinity/2.3.2/meta.yaml +++ b/recipes/trinity/2.3.2/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 skip: True # [osx] source: @@ -23,7 +23,7 @@ requirements: - perl-module-build - perl-file-find-rule - java-jdk - - zlib + - zlib {{CONDA_ZLIB}}* - jellyfish 2.2.3 - samtools 0.1.19 - trimmomatic @@ -39,7 +39,7 @@ requirements: - perl-module-build - perl-file-find-rule - java-jdk - - zlib + - zlib {{CONDA_ZLIB}}* - jellyfish 2.2.3 - samtools 0.1.19 - trimmomatic diff --git a/recipes/trinity/date.2011_11_26/meta.yaml b/recipes/trinity/date.2011_11_26/meta.yaml index 5b09e724e611c..0e0a3a12db805 100644 --- a/recipes/trinity/date.2011_11_26/meta.yaml +++ b/recipes/trinity/date.2011_11_26/meta.yaml @@ -3,7 +3,7 @@ about: license: "https://raw.githubusercontent.com/trinityrnaseq/trinityrnaseq/master/LICENSE.txt" summary: "Trinity assembles transcript sequences from Illumina RNA-Seq data" build: - number: 7 + number: 8 string: ncurses{{CONDA_NCURSES}}_{{PKG_BUILDNUM}} package: name: trinity @@ -25,15 +25,15 @@ requirements: - perl - gcc - openjdk >=6 - - bzip2 - - zlib + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* run: - perl - libgcc - openjdk >=6 - - bzip2 - - zlib + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* - ncurses {{CONDA_NCURSES}}* extra: notes: "Trinity version date.2011_11_26 relies on a custom wrapper script, symlinked to bin/: Trinity-runner.sh. This script changes the current working directory to that of the Trinity.pl perl script before calling Trinity, so relative paths work as expected (particularly for Trinity plugins). All arguments are passed to Trinity.pl (via $@)" diff --git a/recipes/trinity/meta.yaml b/recipes/trinity/meta.yaml index 3e11c6475729c..64570e4434955 100644 --- a/recipes/trinity/meta.yaml +++ b/recipes/trinity/meta.yaml @@ -1,5 +1,5 @@ build: - number: 0 + number: 1 # OSX build skipped because of this error: https://gist.github.com/pvanheus/2fbce93b326a3edb1a57aaebc8ca749e skip: True # [osx] @@ -21,7 +21,7 @@ requirements: - samtools >=1.3 - slclust - trimmomatic >=0.36 - - zlib + - zlib {{CONDA_ZLIB}}* run: - bowtie @@ -37,7 +37,7 @@ requirements: - samtools >=1.3 - slclust - trimmomatic >=0.36 - - zlib + - zlib {{CONDA_ZLIB}}* source: fn: Trinity-v2.5.1.tar.gz diff --git a/recipes/ucsc-addcols/meta.yaml b/recipes/ucsc-addcols/meta.yaml index ef6099652ae0c..d30f09dd95470 100644 --- a/recipes/ucsc-addcols/meta.yaml +++ b/recipes/ucsc-addcols/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ameme/meta.yaml b/recipes/ucsc-ameme/meta.yaml index 7bc18315c45cc..6568126f8d96a 100644 --- a/recipes/ucsc-ameme/meta.yaml +++ b/recipes/ucsc-ameme/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-autodtd/meta.yaml b/recipes/ucsc-autodtd/meta.yaml index f06354a23f49b..10d76bc76fb88 100644 --- a/recipes/ucsc-autodtd/meta.yaml +++ b/recipes/ucsc-autodtd/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-autosql/meta.yaml b/recipes/ucsc-autosql/meta.yaml index 40d8d2a4c7efa..5389c4de5482e 100644 --- a/recipes/ucsc-autosql/meta.yaml +++ b/recipes/ucsc-autosql/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-autoxml/meta.yaml b/recipes/ucsc-autoxml/meta.yaml index 468a5a8a5df31..3db948419df9e 100644 --- a/recipes/ucsc-autoxml/meta.yaml +++ b/recipes/ucsc-autoxml/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-avecols/meta.yaml b/recipes/ucsc-avecols/meta.yaml index fa088b366c9b6..bcaed58518a73 100644 --- a/recipes/ucsc-avecols/meta.yaml +++ b/recipes/ucsc-avecols/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-axtchain/meta.yaml b/recipes/ucsc-axtchain/meta.yaml index 09cd4960ece36..4d10180f2d48f 100644 --- a/recipes/ucsc-axtchain/meta.yaml +++ b/recipes/ucsc-axtchain/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-axtsort/meta.yaml b/recipes/ucsc-axtsort/meta.yaml index a0a30a78d4254..ae29ea817a99d 100644 --- a/recipes/ucsc-axtsort/meta.yaml +++ b/recipes/ucsc-axtsort/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-axtswap/meta.yaml b/recipes/ucsc-axtswap/meta.yaml index f2a0a2ff9c4f7..400fea3079a81 100644 --- a/recipes/ucsc-axtswap/meta.yaml +++ b/recipes/ucsc-axtswap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] test: commands: diff --git a/recipes/ucsc-axttomaf/meta.yaml b/recipes/ucsc-axttomaf/meta.yaml index fce51fc2ce32e..bc62a05d7739d 100644 --- a/recipes/ucsc-axttomaf/meta.yaml +++ b/recipes/ucsc-axttomaf/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-axttopsl/meta.yaml b/recipes/ucsc-axttopsl/meta.yaml index 04b8a8a84497e..572fb058d1f50 100644 --- a/recipes/ucsc-axttopsl/meta.yaml +++ b/recipes/ucsc-axttopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bamtopsl/meta.yaml b/recipes/ucsc-bamtopsl/meta.yaml index fe4263aff2998..48d19f870bd58 100644 --- a/recipes/ucsc-bamtopsl/meta.yaml +++ b/recipes/ucsc-bamtopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedclip/meta.yaml b/recipes/ucsc-bedclip/meta.yaml index b8a836739ad82..ddd92fd216af3 100644 --- a/recipes/ucsc-bedclip/meta.yaml +++ b/recipes/ucsc-bedclip/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedcommonregions/meta.yaml b/recipes/ucsc-bedcommonregions/meta.yaml index 8a25bfc23a07a..a18a8009a9739 100644 --- a/recipes/ucsc-bedcommonregions/meta.yaml +++ b/recipes/ucsc-bedcommonregions/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedcoverage/meta.yaml b/recipes/ucsc-bedcoverage/meta.yaml index c4f2a1d5b66de..62ac3088793de 100644 --- a/recipes/ucsc-bedcoverage/meta.yaml +++ b/recipes/ucsc-bedcoverage/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedextendranges/meta.yaml b/recipes/ucsc-bedextendranges/meta.yaml index 31b78be78aeb4..e44c79cae060b 100644 --- a/recipes/ucsc-bedextendranges/meta.yaml +++ b/recipes/ucsc-bedextendranges/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedgeneparts/meta.yaml b/recipes/ucsc-bedgeneparts/meta.yaml index 2d3a4bdc63207..3fb9c1697da78 100644 --- a/recipes/ucsc-bedgeneparts/meta.yaml +++ b/recipes/ucsc-bedgeneparts/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedgraphpack/meta.yaml b/recipes/ucsc-bedgraphpack/meta.yaml index e8c1df2d66de0..71e295597dd2c 100644 --- a/recipes/ucsc-bedgraphpack/meta.yaml +++ b/recipes/ucsc-bedgraphpack/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedgraphtobigwig/meta.yaml b/recipes/ucsc-bedgraphtobigwig/meta.yaml index 1115d120fce7d..92a27f91daf6d 100644 --- a/recipes/ucsc-bedgraphtobigwig/meta.yaml +++ b/recipes/ucsc-bedgraphtobigwig/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] test: commands: diff --git a/recipes/ucsc-bedintersect/meta.yaml b/recipes/ucsc-bedintersect/meta.yaml index 7a7bba3620946..c8e11ba7c6b0c 100644 --- a/recipes/ucsc-bedintersect/meta.yaml +++ b/recipes/ucsc-bedintersect/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-beditemoverlapcount/meta.yaml b/recipes/ucsc-beditemoverlapcount/meta.yaml index f8ce0849e7636..00bbc80873bb4 100644 --- a/recipes/ucsc-beditemoverlapcount/meta.yaml +++ b/recipes/ucsc-beditemoverlapcount/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedpileups/meta.yaml b/recipes/ucsc-bedpileups/meta.yaml index 4735bb847cc2e..4ae3404db5614 100644 --- a/recipes/ucsc-bedpileups/meta.yaml +++ b/recipes/ucsc-bedpileups/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedremoveoverlap/meta.yaml b/recipes/ucsc-bedremoveoverlap/meta.yaml index 8d6adb4c2f0e7..15a4cb839ace5 100644 --- a/recipes/ucsc-bedremoveoverlap/meta.yaml +++ b/recipes/ucsc-bedremoveoverlap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedrestricttopositions/meta.yaml b/recipes/ucsc-bedrestricttopositions/meta.yaml index 2f72c96933707..54dc7601bc852 100644 --- a/recipes/ucsc-bedrestricttopositions/meta.yaml +++ b/recipes/ucsc-bedrestricttopositions/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedsort/meta.yaml b/recipes/ucsc-bedsort/meta.yaml index 99ad61b73203b..16e9493815894 100644 --- a/recipes/ucsc-bedsort/meta.yaml +++ b/recipes/ucsc-bedsort/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedtobigbed/meta.yaml b/recipes/ucsc-bedtobigbed/meta.yaml index 3238b59608238..02b59eef5950f 100644 --- a/recipes/ucsc-bedtobigbed/meta.yaml +++ b/recipes/ucsc-bedtobigbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedtogenepred/meta.yaml b/recipes/ucsc-bedtogenepred/meta.yaml index 85d0fb291d8f0..e034217ed72d5 100644 --- a/recipes/ucsc-bedtogenepred/meta.yaml +++ b/recipes/ucsc-bedtogenepred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedtopsl/meta.yaml b/recipes/ucsc-bedtopsl/meta.yaml index ecea64e3b591c..78e0b7998428b 100644 --- a/recipes/ucsc-bedtopsl/meta.yaml +++ b/recipes/ucsc-bedtopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bedweedoverlapping/meta.yaml b/recipes/ucsc-bedweedoverlapping/meta.yaml index 885c4ebf4723e..6666947a50a9a 100644 --- a/recipes/ucsc-bedweedoverlapping/meta.yaml +++ b/recipes/ucsc-bedweedoverlapping/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigbedinfo/meta.yaml b/recipes/ucsc-bigbedinfo/meta.yaml index 2c8a15506efce..522182e04e998 100644 --- a/recipes/ucsc-bigbedinfo/meta.yaml +++ b/recipes/ucsc-bigbedinfo/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigbednameditems/meta.yaml b/recipes/ucsc-bigbednameditems/meta.yaml index 34ba4fc067ea6..0392bf57df97e 100644 --- a/recipes/ucsc-bigbednameditems/meta.yaml +++ b/recipes/ucsc-bigbednameditems/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigbedsummary/meta.yaml b/recipes/ucsc-bigbedsummary/meta.yaml index 8c65e74774926..6554d7210f6f3 100644 --- a/recipes/ucsc-bigbedsummary/meta.yaml +++ b/recipes/ucsc-bigbedsummary/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigbedtobed/meta.yaml b/recipes/ucsc-bigbedtobed/meta.yaml index 7eab4de1f4466..6c9f325f75b40 100644 --- a/recipes/ucsc-bigbedtobed/meta.yaml +++ b/recipes/ucsc-bigbedtobed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigmaftomaf/meta.yaml b/recipes/ucsc-bigmaftomaf/meta.yaml index cd6a999aa5d6b..5885285a9e273 100644 --- a/recipes/ucsc-bigmaftomaf/meta.yaml +++ b/recipes/ucsc-bigmaftomaf/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigpsltopsl/meta.yaml b/recipes/ucsc-bigpsltopsl/meta.yaml index c1ab2d3eb04f9..6158c668c2305 100644 --- a/recipes/ucsc-bigpsltopsl/meta.yaml +++ b/recipes/ucsc-bigpsltopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigaverageoverbed/meta.yaml b/recipes/ucsc-bigwigaverageoverbed/meta.yaml index 6a22edb10f8b5..c3a177b11bb89 100644 --- a/recipes/ucsc-bigwigaverageoverbed/meta.yaml +++ b/recipes/ucsc-bigwigaverageoverbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigcat/meta.yaml b/recipes/ucsc-bigwigcat/meta.yaml index 12de04a26fef0..07a09d5b68524 100644 --- a/recipes/ucsc-bigwigcat/meta.yaml +++ b/recipes/ucsc-bigwigcat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigcluster/meta.yaml b/recipes/ucsc-bigwigcluster/meta.yaml index c79e10028bb23..a67a4cd244907 100644 --- a/recipes/ucsc-bigwigcluster/meta.yaml +++ b/recipes/ucsc-bigwigcluster/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigcorrelate/meta.yaml b/recipes/ucsc-bigwigcorrelate/meta.yaml index 7cb2d3b66266a..18d481837fa5a 100644 --- a/recipes/ucsc-bigwigcorrelate/meta.yaml +++ b/recipes/ucsc-bigwigcorrelate/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwiginfo/meta.yaml b/recipes/ucsc-bigwiginfo/meta.yaml index 859033ac857a4..ad3381803e138 100644 --- a/recipes/ucsc-bigwiginfo/meta.yaml +++ b/recipes/ucsc-bigwiginfo/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigmerge/meta.yaml b/recipes/ucsc-bigwigmerge/meta.yaml index 4f682d0fea122..5076403708176 100644 --- a/recipes/ucsc-bigwigmerge/meta.yaml +++ b/recipes/ucsc-bigwigmerge/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigsummary/meta.yaml b/recipes/ucsc-bigwigsummary/meta.yaml index 1c61e61518a14..916ba05c7601a 100644 --- a/recipes/ucsc-bigwigsummary/meta.yaml +++ b/recipes/ucsc-bigwigsummary/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigtobedgraph/meta.yaml b/recipes/ucsc-bigwigtobedgraph/meta.yaml index 776a517075258..1b55021062391 100644 --- a/recipes/ucsc-bigwigtobedgraph/meta.yaml +++ b/recipes/ucsc-bigwigtobedgraph/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-bigwigtowig/meta.yaml b/recipes/ucsc-bigwigtowig/meta.yaml index 82e8e511d34cc..3c6c245ef0bcf 100644 --- a/recipes/ucsc-bigwigtowig/meta.yaml +++ b/recipes/ucsc-bigwigtowig/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-blasttopsl/meta.yaml b/recipes/ucsc-blasttopsl/meta.yaml index 70b953be4470a..3f1136d4281c9 100644 --- a/recipes/ucsc-blasttopsl/meta.yaml +++ b/recipes/ucsc-blasttopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-blat/meta.yaml b/recipes/ucsc-blat/meta.yaml index a9655233646b6..da21feffdcd68 100644 --- a/recipes/ucsc-blat/meta.yaml +++ b/recipes/ucsc-blat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-catdir/meta.yaml b/recipes/ucsc-catdir/meta.yaml index cad4945642a98..ee46ba64545b1 100644 --- a/recipes/ucsc-catdir/meta.yaml +++ b/recipes/ucsc-catdir/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-catuncomment/meta.yaml b/recipes/ucsc-catuncomment/meta.yaml index a055a7f939dbe..0f85435733ae8 100644 --- a/recipes/ucsc-catuncomment/meta.yaml +++ b/recipes/ucsc-catuncomment/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainantirepeat/meta.yaml b/recipes/ucsc-chainantirepeat/meta.yaml index bec60b5f4cd9e..9d219cbd3e89a 100644 --- a/recipes/ucsc-chainantirepeat/meta.yaml +++ b/recipes/ucsc-chainantirepeat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainfilter/meta.yaml b/recipes/ucsc-chainfilter/meta.yaml index c3e230b861e42..ea94030b760f6 100644 --- a/recipes/ucsc-chainfilter/meta.yaml +++ b/recipes/ucsc-chainfilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainmergesort/meta.yaml b/recipes/ucsc-chainmergesort/meta.yaml index 98426b3c194ca..eac7f1616874f 100644 --- a/recipes/ucsc-chainmergesort/meta.yaml +++ b/recipes/ucsc-chainmergesort/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainnet/meta.yaml b/recipes/ucsc-chainnet/meta.yaml index a6d31aca16e1a..5e8a094ac9dd5 100644 --- a/recipes/ucsc-chainnet/meta.yaml +++ b/recipes/ucsc-chainnet/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainprenet/meta.yaml b/recipes/ucsc-chainprenet/meta.yaml index 908817a5ff389..89c8b0956fd34 100644 --- a/recipes/ucsc-chainprenet/meta.yaml +++ b/recipes/ucsc-chainprenet/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainsort/meta.yaml b/recipes/ucsc-chainsort/meta.yaml index e8a48768d48e0..d02667b5327d5 100644 --- a/recipes/ucsc-chainsort/meta.yaml +++ b/recipes/ucsc-chainsort/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainsplit/meta.yaml b/recipes/ucsc-chainsplit/meta.yaml index e2581aa8d5789..6e61862334b37 100644 --- a/recipes/ucsc-chainsplit/meta.yaml +++ b/recipes/ucsc-chainsplit/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainstitchid/meta.yaml b/recipes/ucsc-chainstitchid/meta.yaml index 5a18ed40cd098..038772ad65591 100644 --- a/recipes/ucsc-chainstitchid/meta.yaml +++ b/recipes/ucsc-chainstitchid/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chainswap/meta.yaml b/recipes/ucsc-chainswap/meta.yaml index 91622196da274..88b316021b6dc 100644 --- a/recipes/ucsc-chainswap/meta.yaml +++ b/recipes/ucsc-chainswap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chaintoaxt/meta.yaml b/recipes/ucsc-chaintoaxt/meta.yaml index 3193a2aec8c24..e6e769576d3bc 100644 --- a/recipes/ucsc-chaintoaxt/meta.yaml +++ b/recipes/ucsc-chaintoaxt/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chaintopsl/meta.yaml b/recipes/ucsc-chaintopsl/meta.yaml index 798caa00bd458..f0d0daca7db88 100644 --- a/recipes/ucsc-chaintopsl/meta.yaml +++ b/recipes/ucsc-chaintopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chaintopslbasic/meta.yaml b/recipes/ucsc-chaintopslbasic/meta.yaml index 6aea6552ac0ce..1cd3d0bce5bf3 100644 --- a/recipes/ucsc-chaintopslbasic/meta.yaml +++ b/recipes/ucsc-chaintopslbasic/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-checkagpandfa/meta.yaml b/recipes/ucsc-checkagpandfa/meta.yaml index b751de1cac1f9..964b3cf39c984 100644 --- a/recipes/ucsc-checkagpandfa/meta.yaml +++ b/recipes/ucsc-checkagpandfa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-checkcoveragegaps/meta.yaml b/recipes/ucsc-checkcoveragegaps/meta.yaml index 8749d2670d6dd..b81ea39fc4124 100644 --- a/recipes/ucsc-checkcoveragegaps/meta.yaml +++ b/recipes/ucsc-checkcoveragegaps/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-checkhgfindspec/meta.yaml b/recipes/ucsc-checkhgfindspec/meta.yaml index 8cb6017e473a9..71c26012fff9e 100644 --- a/recipes/ucsc-checkhgfindspec/meta.yaml +++ b/recipes/ucsc-checkhgfindspec/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-checktablecoords/meta.yaml b/recipes/ucsc-checktablecoords/meta.yaml index 1cce3c934e66a..474fb83f880e3 100644 --- a/recipes/ucsc-checktablecoords/meta.yaml +++ b/recipes/ucsc-checktablecoords/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chopfalines/meta.yaml b/recipes/ucsc-chopfalines/meta.yaml index a07a3b2efaec3..4d5c6f38ba283 100644 --- a/recipes/ucsc-chopfalines/meta.yaml +++ b/recipes/ucsc-chopfalines/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chromgraphfrombin/meta.yaml b/recipes/ucsc-chromgraphfrombin/meta.yaml index 0245e5af876f8..2d8a73ccba2a2 100644 --- a/recipes/ucsc-chromgraphfrombin/meta.yaml +++ b/recipes/ucsc-chromgraphfrombin/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-chromgraphtobin/meta.yaml b/recipes/ucsc-chromgraphtobin/meta.yaml index 35585e38ad988..76e7601fe5d90 100644 --- a/recipes/ucsc-chromgraphtobin/meta.yaml +++ b/recipes/ucsc-chromgraphtobin/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-coltransform/meta.yaml b/recipes/ucsc-coltransform/meta.yaml index b4f00d89880a8..60a3be577cece 100644 --- a/recipes/ucsc-coltransform/meta.yaml +++ b/recipes/ucsc-coltransform/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-countchars/meta.yaml b/recipes/ucsc-countchars/meta.yaml index f9dcfcf2eda06..e594a9c995b0e 100644 --- a/recipes/ucsc-countchars/meta.yaml +++ b/recipes/ucsc-countchars/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-crtreeindexbed/meta.yaml b/recipes/ucsc-crtreeindexbed/meta.yaml index 32a7515221a1c..39bac2d6ae7c6 100644 --- a/recipes/ucsc-crtreeindexbed/meta.yaml +++ b/recipes/ucsc-crtreeindexbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-crtreesearchbed/meta.yaml b/recipes/ucsc-crtreesearchbed/meta.yaml index fa13c09a3570e..c659025642d51 100644 --- a/recipes/ucsc-crtreesearchbed/meta.yaml +++ b/recipes/ucsc-crtreesearchbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-dbsnoop/meta.yaml b/recipes/ucsc-dbsnoop/meta.yaml index 15e6f46a8d7bb..b55bddb13a52c 100644 --- a/recipes/ucsc-dbsnoop/meta.yaml +++ b/recipes/ucsc-dbsnoop/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-dbtrash/meta.yaml b/recipes/ucsc-dbtrash/meta.yaml index e3ce911309f38..ebe56990ce597 100644 --- a/recipes/ucsc-dbtrash/meta.yaml +++ b/recipes/ucsc-dbtrash/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-estorient/meta.yaml b/recipes/ucsc-estorient/meta.yaml index 9e8a7123a6def..95db61771c186 100644 --- a/recipes/ucsc-estorient/meta.yaml +++ b/recipes/ucsc-estorient/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-expmatrixtobarchartbed/meta.yaml b/recipes/ucsc-expmatrixtobarchartbed/meta.yaml index 009f62d0d0ae4..452e0ca80fe5e 100644 --- a/recipes/ucsc-expmatrixtobarchartbed/meta.yaml +++ b/recipes/ucsc-expmatrixtobarchartbed/meta.yaml @@ -19,7 +19,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -28,7 +28,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -37,7 +37,7 @@ requirements: - mysql-connector-c # [linux] - openssl # [linux] - python # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-faalign/meta.yaml b/recipes/ucsc-faalign/meta.yaml index 5765c1e2f345c..c48f81f660a42 100644 --- a/recipes/ucsc-faalign/meta.yaml +++ b/recipes/ucsc-faalign/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-facmp/meta.yaml b/recipes/ucsc-facmp/meta.yaml index 1cc0e6ff230ee..e688b7dcc7698 100644 --- a/recipes/ucsc-facmp/meta.yaml +++ b/recipes/ucsc-facmp/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-facount/meta.yaml b/recipes/ucsc-facount/meta.yaml index 65957e4a81ff1..cb7686eb8546d 100644 --- a/recipes/ucsc-facount/meta.yaml +++ b/recipes/ucsc-facount/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fafilter/meta.yaml b/recipes/ucsc-fafilter/meta.yaml index 65d9da2c8164d..cc30056de80ab 100644 --- a/recipes/ucsc-fafilter/meta.yaml +++ b/recipes/ucsc-fafilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fafiltern/meta.yaml b/recipes/ucsc-fafiltern/meta.yaml index b73fe4c6eeffb..5b2a80ca90786 100644 --- a/recipes/ucsc-fafiltern/meta.yaml +++ b/recipes/ucsc-fafiltern/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fafrag/meta.yaml b/recipes/ucsc-fafrag/meta.yaml index e8245cb07cd48..f09d24a8435da 100644 --- a/recipes/ucsc-fafrag/meta.yaml +++ b/recipes/ucsc-fafrag/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fanoise/meta.yaml b/recipes/ucsc-fanoise/meta.yaml index 1e6addbc26485..bb733b3b2a5b4 100644 --- a/recipes/ucsc-fanoise/meta.yaml +++ b/recipes/ucsc-fanoise/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-faonerecord/meta.yaml b/recipes/ucsc-faonerecord/meta.yaml index 009af246af8e8..254d96698ce54 100644 --- a/recipes/ucsc-faonerecord/meta.yaml +++ b/recipes/ucsc-faonerecord/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fapolyasizes/meta.yaml b/recipes/ucsc-fapolyasizes/meta.yaml index 4fb02a1b63da0..9a068b7645cb2 100644 --- a/recipes/ucsc-fapolyasizes/meta.yaml +++ b/recipes/ucsc-fapolyasizes/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-farandomize/meta.yaml b/recipes/ucsc-farandomize/meta.yaml index 4b92134c563a3..b3d717832e323 100644 --- a/recipes/ucsc-farandomize/meta.yaml +++ b/recipes/ucsc-farandomize/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] test: commands: diff --git a/recipes/ucsc-farc/meta.yaml b/recipes/ucsc-farc/meta.yaml index 4e754a3ac23de..b571b17d41636 100644 --- a/recipes/ucsc-farc/meta.yaml +++ b/recipes/ucsc-farc/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fasize/meta.yaml b/recipes/ucsc-fasize/meta.yaml index 28c204cf1c250..be55b0b535edd 100644 --- a/recipes/ucsc-fasize/meta.yaml +++ b/recipes/ucsc-fasize/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fasomerecords/meta.yaml b/recipes/ucsc-fasomerecords/meta.yaml index a7ef05769a793..e699684a3b4c6 100644 --- a/recipes/ucsc-fasomerecords/meta.yaml +++ b/recipes/ucsc-fasomerecords/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fasplit/meta.yaml b/recipes/ucsc-fasplit/meta.yaml index ddea7cb7a581d..d5cebd6ad1625 100644 --- a/recipes/ucsc-fasplit/meta.yaml +++ b/recipes/ucsc-fasplit/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{ CONDA_ZLIB }}* # [linux] test: commands: diff --git a/recipes/ucsc-fastqstatsandsubsample/meta.yaml b/recipes/ucsc-fastqstatsandsubsample/meta.yaml index b674b5adbad1c..eaee6951fb3e0 100644 --- a/recipes/ucsc-fastqstatsandsubsample/meta.yaml +++ b/recipes/ucsc-fastqstatsandsubsample/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fastqtofa/meta.yaml b/recipes/ucsc-fastqtofa/meta.yaml index a2f7160d4877b..442566a07714e 100644 --- a/recipes/ucsc-fastqtofa/meta.yaml +++ b/recipes/ucsc-fastqtofa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fatofastq/meta.yaml b/recipes/ucsc-fatofastq/meta.yaml index 9bfcb89cb8013..3ea0792b773a5 100644 --- a/recipes/ucsc-fatofastq/meta.yaml +++ b/recipes/ucsc-fatofastq/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fatotab/meta.yaml b/recipes/ucsc-fatotab/meta.yaml index 57075e7b8cccd..d40445f8fad7b 100644 --- a/recipes/ucsc-fatotab/meta.yaml +++ b/recipes/ucsc-fatotab/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fatotwobit/meta.yaml b/recipes/ucsc-fatotwobit/meta.yaml index e8cd7e22af2c5..0747dcdfbe62a 100644 --- a/recipes/ucsc-fatotwobit/meta.yaml +++ b/recipes/ucsc-fatotwobit/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fatrans/meta.yaml b/recipes/ucsc-fatrans/meta.yaml index 6cc5e268e8128..5f5aba9be1a8f 100644 --- a/recipes/ucsc-fatrans/meta.yaml +++ b/recipes/ucsc-fatrans/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-featurebits/meta.yaml b/recipes/ucsc-featurebits/meta.yaml index 657ff4720ebae..011f7835cfc92 100644 --- a/recipes/ucsc-featurebits/meta.yaml +++ b/recipes/ucsc-featurebits/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-fetchchromsizes/meta.yaml b/recipes/ucsc-fetchchromsizes/meta.yaml index 88a186d6ee2ab..91c5af62cbcb3 100644 --- a/recipes/ucsc-fetchchromsizes/meta.yaml +++ b/recipes/ucsc-fetchchromsizes/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-findmotif/meta.yaml b/recipes/ucsc-findmotif/meta.yaml index ace6fba17934f..27516ff8038e1 100644 --- a/recipes/ucsc-findmotif/meta.yaml +++ b/recipes/ucsc-findmotif/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-gaptolift/meta.yaml b/recipes/ucsc-gaptolift/meta.yaml index e4d24a806b61a..3827102ad0d08 100644 --- a/recipes/ucsc-gaptolift/meta.yaml +++ b/recipes/ucsc-gaptolift/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredcheck/meta.yaml b/recipes/ucsc-genepredcheck/meta.yaml index 6436313805afd..9008ad4eef4d5 100644 --- a/recipes/ucsc-genepredcheck/meta.yaml +++ b/recipes/ucsc-genepredcheck/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredfilter/meta.yaml b/recipes/ucsc-genepredfilter/meta.yaml index 56393a6c8ec6c..3e24db54d8e97 100644 --- a/recipes/ucsc-genepredfilter/meta.yaml +++ b/recipes/ucsc-genepredfilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredhisto/meta.yaml b/recipes/ucsc-genepredhisto/meta.yaml index d3efdaf7ec653..0e1f12f377647 100644 --- a/recipes/ucsc-genepredhisto/meta.yaml +++ b/recipes/ucsc-genepredhisto/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredsinglecover/meta.yaml b/recipes/ucsc-genepredsinglecover/meta.yaml index 47f7a0d8064d6..cdd08e4414206 100644 --- a/recipes/ucsc-genepredsinglecover/meta.yaml +++ b/recipes/ucsc-genepredsinglecover/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtobed/meta.yaml b/recipes/ucsc-genepredtobed/meta.yaml index 7100c956c2bee..af49a871ee175 100644 --- a/recipes/ucsc-genepredtobed/meta.yaml +++ b/recipes/ucsc-genepredtobed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtobiggenepred/meta.yaml b/recipes/ucsc-genepredtobiggenepred/meta.yaml index 99592640c1eea..5faddf80d5c12 100644 --- a/recipes/ucsc-genepredtobiggenepred/meta.yaml +++ b/recipes/ucsc-genepredtobiggenepred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtofakepsl/meta.yaml b/recipes/ucsc-genepredtofakepsl/meta.yaml index 1550a4d2ed0ef..01b548e228f22 100644 --- a/recipes/ucsc-genepredtofakepsl/meta.yaml +++ b/recipes/ucsc-genepredtofakepsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtogtf/meta.yaml b/recipes/ucsc-genepredtogtf/meta.yaml index 07660475811c8..398e13320a016 100644 --- a/recipes/ucsc-genepredtogtf/meta.yaml +++ b/recipes/ucsc-genepredtogtf/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtomafframes/meta.yaml b/recipes/ucsc-genepredtomafframes/meta.yaml index fab7a0e5ef8ee..95188f558a4b6 100644 --- a/recipes/ucsc-genepredtomafframes/meta.yaml +++ b/recipes/ucsc-genepredtomafframes/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-genepredtoprot/meta.yaml b/recipes/ucsc-genepredtoprot/meta.yaml index b5c59f4cf2c22..39848c6946767 100644 --- a/recipes/ucsc-genepredtoprot/meta.yaml +++ b/recipes/ucsc-genepredtoprot/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-getrna/meta.yaml b/recipes/ucsc-getrna/meta.yaml index d254f3840c6c4..d97ade1b7c05c 100644 --- a/recipes/ucsc-getrna/meta.yaml +++ b/recipes/ucsc-getrna/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-getrnapred/meta.yaml b/recipes/ucsc-getrnapred/meta.yaml index 14f880b144808..09372a2190ba9 100644 --- a/recipes/ucsc-getrnapred/meta.yaml +++ b/recipes/ucsc-getrnapred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-gff3togenepred/meta.yaml b/recipes/ucsc-gff3togenepred/meta.yaml index 892e9290dd67c..926ed47307b94 100644 --- a/recipes/ucsc-gff3togenepred/meta.yaml +++ b/recipes/ucsc-gff3togenepred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-gff3topsl/meta.yaml b/recipes/ucsc-gff3topsl/meta.yaml index 28b1bfea5fae5..ec7c910dcb649 100644 --- a/recipes/ucsc-gff3topsl/meta.yaml +++ b/recipes/ucsc-gff3topsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-gmtime/meta.yaml b/recipes/ucsc-gmtime/meta.yaml index 38b4518896ad3..b6d08c98192c3 100644 --- a/recipes/ucsc-gmtime/meta.yaml +++ b/recipes/ucsc-gmtime/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-gtftogenepred/meta.yaml b/recipes/ucsc-gtftogenepred/meta.yaml index 3966635fb1661..aa48910e490d0 100644 --- a/recipes/ucsc-gtftogenepred/meta.yaml +++ b/recipes/ucsc-gtftogenepred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-headrest/meta.yaml b/recipes/ucsc-headrest/meta.yaml index aaf4d3d1ec0c4..33214b5ad0101 100644 --- a/recipes/ucsc-headrest/meta.yaml +++ b/recipes/ucsc-headrest/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgbbidblink/meta.yaml b/recipes/ucsc-hgbbidblink/meta.yaml index efbd0f496bd1c..e2942655918eb 100644 --- a/recipes/ucsc-hgbbidblink/meta.yaml +++ b/recipes/ucsc-hgbbidblink/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgfakeagp/meta.yaml b/recipes/ucsc-hgfakeagp/meta.yaml index 3647d04eb4132..ea7e619ca70a3 100644 --- a/recipes/ucsc-hgfakeagp/meta.yaml +++ b/recipes/ucsc-hgfakeagp/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgfindspec/meta.yaml b/recipes/ucsc-hgfindspec/meta.yaml index 83926a24be66a..70398c3a9ece7 100644 --- a/recipes/ucsc-hgfindspec/meta.yaml +++ b/recipes/ucsc-hgfindspec/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hggcpercent/meta.yaml b/recipes/ucsc-hggcpercent/meta.yaml index 440c1b5d8c7be..69a3eb715353b 100644 --- a/recipes/ucsc-hggcpercent/meta.yaml +++ b/recipes/ucsc-hggcpercent/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadbed/meta.yaml b/recipes/ucsc-hgloadbed/meta.yaml index 5083f442d7de6..b7168dd3ad5a2 100644 --- a/recipes/ucsc-hgloadbed/meta.yaml +++ b/recipes/ucsc-hgloadbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadchain/meta.yaml b/recipes/ucsc-hgloadchain/meta.yaml index 1c5f19cfcccca..18f1033615a9b 100644 --- a/recipes/ucsc-hgloadchain/meta.yaml +++ b/recipes/ucsc-hgloadchain/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadmaf/meta.yaml b/recipes/ucsc-hgloadmaf/meta.yaml index 26252c440d507..4ecf44cad5aee 100644 --- a/recipes/ucsc-hgloadmaf/meta.yaml +++ b/recipes/ucsc-hgloadmaf/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadnet/meta.yaml b/recipes/ucsc-hgloadnet/meta.yaml index e67c992116878..5f348633b1c2f 100644 --- a/recipes/ucsc-hgloadnet/meta.yaml +++ b/recipes/ucsc-hgloadnet/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadout/meta.yaml b/recipes/ucsc-hgloadout/meta.yaml index 879c429525c52..10fd3df44c209 100644 --- a/recipes/ucsc-hgloadout/meta.yaml +++ b/recipes/ucsc-hgloadout/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadoutjoined/meta.yaml b/recipes/ucsc-hgloadoutjoined/meta.yaml index c46ba92cc5260..595aaf4dd8980 100644 --- a/recipes/ucsc-hgloadoutjoined/meta.yaml +++ b/recipes/ucsc-hgloadoutjoined/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgloadwiggle/meta.yaml b/recipes/ucsc-hgloadwiggle/meta.yaml index 514641aaa2168..dee709e97ce0c 100644 --- a/recipes/ucsc-hgloadwiggle/meta.yaml +++ b/recipes/ucsc-hgloadwiggle/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgspeciesrna/meta.yaml b/recipes/ucsc-hgspeciesrna/meta.yaml index 43dd506946bd7..cd7bdbd3657ba 100644 --- a/recipes/ucsc-hgspeciesrna/meta.yaml +++ b/recipes/ucsc-hgspeciesrna/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgsqldump/meta.yaml b/recipes/ucsc-hgsqldump/meta.yaml index 86a605b9dba69..016fdf9f58c68 100644 --- a/recipes/ucsc-hgsqldump/meta.yaml +++ b/recipes/ucsc-hgsqldump/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hgtrackdb/meta.yaml b/recipes/ucsc-hgtrackdb/meta.yaml index 4e611a32e34ee..ede114d9e0b7c 100644 --- a/recipes/ucsc-hgtrackdb/meta.yaml +++ b/recipes/ucsc-hgtrackdb/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-htmlcheck/meta.yaml b/recipes/ucsc-htmlcheck/meta.yaml index aaa5697ebaf58..75f2319599177 100644 --- a/recipes/ucsc-htmlcheck/meta.yaml +++ b/recipes/ucsc-htmlcheck/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hubcheck/meta.yaml b/recipes/ucsc-hubcheck/meta.yaml index 923ec8fe0163c..74b2e7a6025e9 100644 --- a/recipes/ucsc-hubcheck/meta.yaml +++ b/recipes/ucsc-hubcheck/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-hubpubliccheck/meta.yaml b/recipes/ucsc-hubpubliccheck/meta.yaml index 34f9671378900..884f298e9014a 100644 --- a/recipes/ucsc-hubpubliccheck/meta.yaml +++ b/recipes/ucsc-hubpubliccheck/meta.yaml @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ixixx/meta.yaml b/recipes/ucsc-ixixx/meta.yaml index f7fc0aa3611a6..151b2ffc4a559 100644 --- a/recipes/ucsc-ixixx/meta.yaml +++ b/recipes/ucsc-ixixx/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-lavtoaxt/meta.yaml b/recipes/ucsc-lavtoaxt/meta.yaml index 0b002f8bce7eb..bea9e887d0a6e 100644 --- a/recipes/ucsc-lavtoaxt/meta.yaml +++ b/recipes/ucsc-lavtoaxt/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-lavtopsl/meta.yaml b/recipes/ucsc-lavtopsl/meta.yaml index 48957a40ab601..ec6b2270e25d9 100644 --- a/recipes/ucsc-lavtopsl/meta.yaml +++ b/recipes/ucsc-lavtopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ldhggene/meta.yaml b/recipes/ucsc-ldhggene/meta.yaml index b1c8313dde864..a3ca44d9ce2f2 100644 --- a/recipes/ucsc-ldhggene/meta.yaml +++ b/recipes/ucsc-ldhggene/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-liftover/meta.yaml b/recipes/ucsc-liftover/meta.yaml index 1c29382c172cd..0dd5cc7dc63ed 100644 --- a/recipes/ucsc-liftover/meta.yaml +++ b/recipes/ucsc-liftover/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-liftup/meta.yaml b/recipes/ucsc-liftup/meta.yaml index 7ff8535333f29..5810c4b8e80e8 100644 --- a/recipes/ucsc-liftup/meta.yaml +++ b/recipes/ucsc-liftup/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-linestora/meta.yaml b/recipes/ucsc-linestora/meta.yaml index ee274b2eda961..0c0b60e64c6f6 100644 --- a/recipes/ucsc-linestora/meta.yaml +++ b/recipes/ucsc-linestora/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-localtime/meta.yaml b/recipes/ucsc-localtime/meta.yaml index 7eb7833aeba9f..652430dfc3150 100644 --- a/recipes/ucsc-localtime/meta.yaml +++ b/recipes/ucsc-localtime/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafaddirows/meta.yaml b/recipes/ucsc-mafaddirows/meta.yaml index 6f6033f7c98b5..9deb363e063c8 100644 --- a/recipes/ucsc-mafaddirows/meta.yaml +++ b/recipes/ucsc-mafaddirows/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafaddqrows/meta.yaml b/recipes/ucsc-mafaddqrows/meta.yaml index f932b3085196c..1acd608709133 100644 --- a/recipes/ucsc-mafaddqrows/meta.yaml +++ b/recipes/ucsc-mafaddqrows/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafcoverage/meta.yaml b/recipes/ucsc-mafcoverage/meta.yaml index 2559f56ec3097..fa76c5b7cc493 100644 --- a/recipes/ucsc-mafcoverage/meta.yaml +++ b/recipes/ucsc-mafcoverage/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maffetch/meta.yaml b/recipes/ucsc-maffetch/meta.yaml index 8f758086990f4..adc09174ddead 100644 --- a/recipes/ucsc-maffetch/meta.yaml +++ b/recipes/ucsc-maffetch/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] diff --git a/recipes/ucsc-maffilter/meta.yaml b/recipes/ucsc-maffilter/meta.yaml index c0c883e889750..b5319597117df 100644 --- a/recipes/ucsc-maffilter/meta.yaml +++ b/recipes/ucsc-maffilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maffrag/meta.yaml b/recipes/ucsc-maffrag/meta.yaml index 55e714ad59a3a..813e7e998fd0e 100644 --- a/recipes/ucsc-maffrag/meta.yaml +++ b/recipes/ucsc-maffrag/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maffrags/meta.yaml b/recipes/ucsc-maffrags/meta.yaml index 9f0d9d5a02a88..cd31fd2f02a42 100644 --- a/recipes/ucsc-maffrags/meta.yaml +++ b/recipes/ucsc-maffrags/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafgene/meta.yaml b/recipes/ucsc-mafgene/meta.yaml index ee46b7ae1b1f1..45454a58dee29 100644 --- a/recipes/ucsc-mafgene/meta.yaml +++ b/recipes/ucsc-mafgene/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafmefirst/meta.yaml b/recipes/ucsc-mafmefirst/meta.yaml index a158f9d7a2704..ef0ded0b478e8 100644 --- a/recipes/ucsc-mafmefirst/meta.yaml +++ b/recipes/ucsc-mafmefirst/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maforder/meta.yaml b/recipes/ucsc-maforder/meta.yaml index 2fa3bec34464e..e17f4240b9b55 100644 --- a/recipes/ucsc-maforder/meta.yaml +++ b/recipes/ucsc-maforder/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafranges/meta.yaml b/recipes/ucsc-mafranges/meta.yaml index f788a5097c15d..9dfc0fc095043 100644 --- a/recipes/ucsc-mafranges/meta.yaml +++ b/recipes/ucsc-mafranges/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafsinregion/meta.yaml b/recipes/ucsc-mafsinregion/meta.yaml index 36a0a4babd1c3..0527d97f8abc4 100644 --- a/recipes/ucsc-mafsinregion/meta.yaml +++ b/recipes/ucsc-mafsinregion/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafspecieslist/meta.yaml b/recipes/ucsc-mafspecieslist/meta.yaml index ce41141efbb97..b392571e2a7f7 100644 --- a/recipes/ucsc-mafspecieslist/meta.yaml +++ b/recipes/ucsc-mafspecieslist/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafspeciessubset/meta.yaml b/recipes/ucsc-mafspeciessubset/meta.yaml index e3184e6359379..9490c774241de 100644 --- a/recipes/ucsc-mafspeciessubset/meta.yaml +++ b/recipes/ucsc-mafspeciessubset/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafsplit/meta.yaml b/recipes/ucsc-mafsplit/meta.yaml index 4129dfc9a34c5..09f5488a76517 100644 --- a/recipes/ucsc-mafsplit/meta.yaml +++ b/recipes/ucsc-mafsplit/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mafsplitpos/meta.yaml b/recipes/ucsc-mafsplitpos/meta.yaml index d7440c3a5d15d..8961d03fb5c9f 100644 --- a/recipes/ucsc-mafsplitpos/meta.yaml +++ b/recipes/ucsc-mafsplitpos/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maftoaxt/meta.yaml b/recipes/ucsc-maftoaxt/meta.yaml index 10678ef38942e..c0dbd7fa2fe91 100644 --- a/recipes/ucsc-maftoaxt/meta.yaml +++ b/recipes/ucsc-maftoaxt/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maftobigmaf/meta.yaml b/recipes/ucsc-maftobigmaf/meta.yaml index 1f8172b047173..1a515461db574 100644 --- a/recipes/ucsc-maftobigmaf/meta.yaml +++ b/recipes/ucsc-maftobigmaf/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maftopsl/meta.yaml b/recipes/ucsc-maftopsl/meta.yaml index 0644a7513d6e0..97e4f79b5777d 100644 --- a/recipes/ucsc-maftopsl/meta.yaml +++ b/recipes/ucsc-maftopsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maftosnpbed/meta.yaml b/recipes/ucsc-maftosnpbed/meta.yaml index 9c3f12ed8cd53..21fa44489454b 100644 --- a/recipes/ucsc-maftosnpbed/meta.yaml +++ b/recipes/ucsc-maftosnpbed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maketablelist/meta.yaml b/recipes/ucsc-maketablelist/meta.yaml index 229067db2f696..78b686a87b71b 100644 --- a/recipes/ucsc-maketablelist/meta.yaml +++ b/recipes/ucsc-maketablelist/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-maskoutfa/meta.yaml b/recipes/ucsc-maskoutfa/meta.yaml index d3cede4120dc9..1aa36bf04d773 100644 --- a/recipes/ucsc-maskoutfa/meta.yaml +++ b/recipes/ucsc-maskoutfa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mktime/meta.yaml b/recipes/ucsc-mktime/meta.yaml index b5e713cad690b..61789efe3a693 100644 --- a/recipes/ucsc-mktime/meta.yaml +++ b/recipes/ucsc-mktime/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-mrnatogene/meta.yaml b/recipes/ucsc-mrnatogene/meta.yaml index f139ae28e13ff..b6162dccc656d 100644 --- a/recipes/ucsc-mrnatogene/meta.yaml +++ b/recipes/ucsc-mrnatogene/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-netchainsubset/meta.yaml b/recipes/ucsc-netchainsubset/meta.yaml index d5aadc6ec0c12..125b5dbe3ac9f 100644 --- a/recipes/ucsc-netchainsubset/meta.yaml +++ b/recipes/ucsc-netchainsubset/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-netclass/meta.yaml b/recipes/ucsc-netclass/meta.yaml index a2a77afe59fd8..dc83149f6393a 100644 --- a/recipes/ucsc-netclass/meta.yaml +++ b/recipes/ucsc-netclass/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-netfilter/meta.yaml b/recipes/ucsc-netfilter/meta.yaml index 150a626f4d345..382a2737c4310 100644 --- a/recipes/ucsc-netfilter/meta.yaml +++ b/recipes/ucsc-netfilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-netsplit/meta.yaml b/recipes/ucsc-netsplit/meta.yaml index 2a5d36eb527f7..828b69151d80f 100644 --- a/recipes/ucsc-netsplit/meta.yaml +++ b/recipes/ucsc-netsplit/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-netsyntenic/meta.yaml b/recipes/ucsc-netsyntenic/meta.yaml index 241a5a7c0a17a..86ffa65dbb570 100644 --- a/recipes/ucsc-netsyntenic/meta.yaml +++ b/recipes/ucsc-netsyntenic/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 # Skipping OSX because of the following error: # /Applications/Xcode.app/Contents/Developer/Toolchains/XcodeDefault.xctoolchain/usr/bin/install_name_tool: # changing install names or rpaths can't be redone for: @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -43,7 +43,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-nettoaxt/meta.yaml b/recipes/ucsc-nettoaxt/meta.yaml index 7f383ad8e38d6..3baf2eb70899d 100644 --- a/recipes/ucsc-nettoaxt/meta.yaml +++ b/recipes/ucsc-nettoaxt/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-nettobed/meta.yaml b/recipes/ucsc-nettobed/meta.yaml index 2b120170a8ed6..b34fe93b04f8f 100644 --- a/recipes/ucsc-nettobed/meta.yaml +++ b/recipes/ucsc-nettobed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-newprog/meta.yaml b/recipes/ucsc-newprog/meta.yaml index d2954f4bd1006..74022a4d9b75d 100644 --- a/recipes/ucsc-newprog/meta.yaml +++ b/recipes/ucsc-newprog/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-newpythonprog/meta.yaml b/recipes/ucsc-newpythonprog/meta.yaml index b5b81861ff764..626d4e96be777 100644 --- a/recipes/ucsc-newpythonprog/meta.yaml +++ b/recipes/ucsc-newpythonprog/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-nibfrag/meta.yaml b/recipes/ucsc-nibfrag/meta.yaml index 64c3625ab7948..c5bc9e6350a8c 100644 --- a/recipes/ucsc-nibfrag/meta.yaml +++ b/recipes/ucsc-nibfrag/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-nibsize/meta.yaml b/recipes/ucsc-nibsize/meta.yaml index c7526e39a4428..004de7283ab4b 100644 --- a/recipes/ucsc-nibsize/meta.yaml +++ b/recipes/ucsc-nibsize/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-oligomatch/meta.yaml b/recipes/ucsc-oligomatch/meta.yaml index 2e4e3b433e9a9..076196f26aefe 100644 --- a/recipes/ucsc-oligomatch/meta.yaml +++ b/recipes/ucsc-oligomatch/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-overlapselect/meta.yaml b/recipes/ucsc-overlapselect/meta.yaml index f9c5be5fa8ed2..edaf2a82d5d21 100644 --- a/recipes/ucsc-overlapselect/meta.yaml +++ b/recipes/ucsc-overlapselect/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-parafetch/meta.yaml b/recipes/ucsc-parafetch/meta.yaml index 1da6c9f4a67a4..682759d91abcc 100644 --- a/recipes/ucsc-parafetch/meta.yaml +++ b/recipes/ucsc-parafetch/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-parasync/meta.yaml b/recipes/ucsc-parasync/meta.yaml index 4144db96cacfb..b927bd6dbbfa8 100644 --- a/recipes/ucsc-parasync/meta.yaml +++ b/recipes/ucsc-parasync/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-positionaltblcheck/meta.yaml b/recipes/ucsc-positionaltblcheck/meta.yaml index 3cdcd43ce45a2..8633181069027 100644 --- a/recipes/ucsc-positionaltblcheck/meta.yaml +++ b/recipes/ucsc-positionaltblcheck/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslcat/meta.yaml b/recipes/ucsc-pslcat/meta.yaml index d35ddf0d20335..a82bc2e323341 100644 --- a/recipes/ucsc-pslcat/meta.yaml +++ b/recipes/ucsc-pslcat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslcdnafilter/meta.yaml b/recipes/ucsc-pslcdnafilter/meta.yaml index 26324507c25b7..46b72b9a35537 100644 --- a/recipes/ucsc-pslcdnafilter/meta.yaml +++ b/recipes/ucsc-pslcdnafilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslcheck/meta.yaml b/recipes/ucsc-pslcheck/meta.yaml index 9f701f0d5e40f..00a5bf8bb4845 100644 --- a/recipes/ucsc-pslcheck/meta.yaml +++ b/recipes/ucsc-pslcheck/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-psldropoverlap/meta.yaml b/recipes/ucsc-psldropoverlap/meta.yaml index 913a967c090fe..2c00db849e13f 100644 --- a/recipes/ucsc-psldropoverlap/meta.yaml +++ b/recipes/ucsc-psldropoverlap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslfilter/meta.yaml b/recipes/ucsc-pslfilter/meta.yaml index 1ac5af1f7f24e..dd53aabb5ddc1 100644 --- a/recipes/ucsc-pslfilter/meta.yaml +++ b/recipes/ucsc-pslfilter/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslhisto/meta.yaml b/recipes/ucsc-pslhisto/meta.yaml index 07f9f02d18677..5ea00dc2ad60f 100644 --- a/recipes/ucsc-pslhisto/meta.yaml +++ b/recipes/ucsc-pslhisto/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/ucsc-pslliftsubrangeblat/meta.yaml b/recipes/ucsc-pslliftsubrangeblat/meta.yaml index 918314fcc8724..fa7958b1e2d5b 100644 --- a/recipes/ucsc-pslliftsubrangeblat/meta.yaml +++ b/recipes/ucsc-pslliftsubrangeblat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslmap/meta.yaml b/recipes/ucsc-pslmap/meta.yaml index ef9af174449df..a4a72291b5c75 100644 --- a/recipes/ucsc-pslmap/meta.yaml +++ b/recipes/ucsc-pslmap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslmappostchain/meta.yaml b/recipes/ucsc-pslmappostchain/meta.yaml index 8667f18f7fbe0..678acc73e934e 100644 --- a/recipes/ucsc-pslmappostchain/meta.yaml +++ b/recipes/ucsc-pslmappostchain/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslmrnacover/meta.yaml b/recipes/ucsc-pslmrnacover/meta.yaml index afe5b25c06e11..fb628f228738e 100644 --- a/recipes/ucsc-pslmrnacover/meta.yaml +++ b/recipes/ucsc-pslmrnacover/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslpairs/meta.yaml b/recipes/ucsc-pslpairs/meta.yaml index bc09d7614875c..1432e774d916e 100644 --- a/recipes/ucsc-pslpairs/meta.yaml +++ b/recipes/ucsc-pslpairs/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslpartition/meta.yaml b/recipes/ucsc-pslpartition/meta.yaml index a02e508ac336e..11a9434d0141a 100644 --- a/recipes/ucsc-pslpartition/meta.yaml +++ b/recipes/ucsc-pslpartition/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslpostarget/meta.yaml b/recipes/ucsc-pslpostarget/meta.yaml index f767bcb53c55d..4a364dccf719a 100644 --- a/recipes/ucsc-pslpostarget/meta.yaml +++ b/recipes/ucsc-pslpostarget/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslpretty/meta.yaml b/recipes/ucsc-pslpretty/meta.yaml index 5b4cdaa138174..1e7b367fb2f02 100644 --- a/recipes/ucsc-pslpretty/meta.yaml +++ b/recipes/ucsc-pslpretty/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslrc/meta.yaml b/recipes/ucsc-pslrc/meta.yaml index 131a8ede4ad6d..7182915446633 100644 --- a/recipes/ucsc-pslrc/meta.yaml +++ b/recipes/ucsc-pslrc/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslrecalcmatch/meta.yaml b/recipes/ucsc-pslrecalcmatch/meta.yaml index 5493552e8b6af..92cc1f48b20b3 100644 --- a/recipes/ucsc-pslrecalcmatch/meta.yaml +++ b/recipes/ucsc-pslrecalcmatch/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslreps/meta.yaml b/recipes/ucsc-pslreps/meta.yaml index 72aa18cc76f24..6b3adda8ac176 100644 --- a/recipes/ucsc-pslreps/meta.yaml +++ b/recipes/ucsc-pslreps/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslscore/meta.yaml b/recipes/ucsc-pslscore/meta.yaml index 9ff1cdfc9b9ec..38fded3042b17 100644 --- a/recipes/ucsc-pslscore/meta.yaml +++ b/recipes/ucsc-pslscore/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslselect/meta.yaml b/recipes/ucsc-pslselect/meta.yaml index 04dce6eb64003..974c34d4e0595 100644 --- a/recipes/ucsc-pslselect/meta.yaml +++ b/recipes/ucsc-pslselect/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslsort/meta.yaml b/recipes/ucsc-pslsort/meta.yaml index 410594835bfba..f753b4f59a5cf 100644 --- a/recipes/ucsc-pslsort/meta.yaml +++ b/recipes/ucsc-pslsort/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslstats/meta.yaml b/recipes/ucsc-pslstats/meta.yaml index 537e2720e7f0f..9ce6b84970f7c 100644 --- a/recipes/ucsc-pslstats/meta.yaml +++ b/recipes/ucsc-pslstats/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslswap/meta.yaml b/recipes/ucsc-pslswap/meta.yaml index 7562b52727cad..a6ea4afc98a35 100644 --- a/recipes/ucsc-pslswap/meta.yaml +++ b/recipes/ucsc-pslswap/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-psltobed/meta.yaml b/recipes/ucsc-psltobed/meta.yaml index 856f5b93091bd..efd3900ac3f07 100644 --- a/recipes/ucsc-psltobed/meta.yaml +++ b/recipes/ucsc-psltobed/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-psltobigpsl/meta.yaml b/recipes/ucsc-psltobigpsl/meta.yaml index c8f0d9602de11..ae24a8fc1293b 100644 --- a/recipes/ucsc-psltobigpsl/meta.yaml +++ b/recipes/ucsc-psltobigpsl/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-psltochain/meta.yaml b/recipes/ucsc-psltochain/meta.yaml index 00836cdb7c992..daa826075ab7d 100644 --- a/recipes/ucsc-psltochain/meta.yaml +++ b/recipes/ucsc-psltochain/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-psltopslx/meta.yaml b/recipes/ucsc-psltopslx/meta.yaml index 863bf7f41d622..e227f607f2c4f 100644 --- a/recipes/ucsc-psltopslx/meta.yaml +++ b/recipes/ucsc-psltopslx/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-pslxtofa/meta.yaml b/recipes/ucsc-pslxtofa/meta.yaml index 59bf5978acdea..1f799bbc04068 100644 --- a/recipes/ucsc-pslxtofa/meta.yaml +++ b/recipes/ucsc-pslxtofa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-qacagplift/meta.yaml b/recipes/ucsc-qacagplift/meta.yaml index 55e725088b731..ed5ac5f5a6e2f 100644 --- a/recipes/ucsc-qacagplift/meta.yaml +++ b/recipes/ucsc-qacagplift/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-qactoqa/meta.yaml b/recipes/ucsc-qactoqa/meta.yaml index 8f60ee12128f5..b7028d0589e11 100644 --- a/recipes/ucsc-qactoqa/meta.yaml +++ b/recipes/ucsc-qactoqa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-qactowig/meta.yaml b/recipes/ucsc-qactowig/meta.yaml index 17b12ea4b99fa..ae56d63447032 100644 --- a/recipes/ucsc-qactowig/meta.yaml +++ b/recipes/ucsc-qactowig/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-qatoqac/meta.yaml b/recipes/ucsc-qatoqac/meta.yaml index e13de6d2545ba..f403f77b202bd 100644 --- a/recipes/ucsc-qatoqac/meta.yaml +++ b/recipes/ucsc-qatoqac/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-randomlines/meta.yaml b/recipes/ucsc-randomlines/meta.yaml index 05fcd5714d73c..1716387c82697 100644 --- a/recipes/ucsc-randomlines/meta.yaml +++ b/recipes/ucsc-randomlines/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-rasqlquery/meta.yaml b/recipes/ucsc-rasqlquery/meta.yaml index 7ff4f065db5ac..0520f97a746e4 100644 --- a/recipes/ucsc-rasqlquery/meta.yaml +++ b/recipes/ucsc-rasqlquery/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ratolines/meta.yaml b/recipes/ucsc-ratolines/meta.yaml index ecc093b48d985..e3ccc309ba17c 100644 --- a/recipes/ucsc-ratolines/meta.yaml +++ b/recipes/ucsc-ratolines/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ratotab/meta.yaml b/recipes/ucsc-ratotab/meta.yaml index 7b7522ecbb576..7673579b7c129 100644 --- a/recipes/ucsc-ratotab/meta.yaml +++ b/recipes/ucsc-ratotab/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-rmfadups/meta.yaml b/recipes/ucsc-rmfadups/meta.yaml index 3412d576763ac..2410fa8b50164 100644 --- a/recipes/ucsc-rmfadups/meta.yaml +++ b/recipes/ucsc-rmfadups/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-rowstocols/meta.yaml b/recipes/ucsc-rowstocols/meta.yaml index a4fcc790cc9a7..edb3d4a2e5110 100644 --- a/recipes/ucsc-rowstocols/meta.yaml +++ b/recipes/ucsc-rowstocols/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-spacedtotab/meta.yaml b/recipes/ucsc-spacedtotab/meta.yaml index ed86c85a2642c..c16f6c647cc87 100644 --- a/recipes/ucsc-spacedtotab/meta.yaml +++ b/recipes/ucsc-spacedtotab/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-splitfile/meta.yaml b/recipes/ucsc-splitfile/meta.yaml index f1812fbba746a..5add912da0a60 100644 --- a/recipes/ucsc-splitfile/meta.yaml +++ b/recipes/ucsc-splitfile/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-splitfilebycolumn/meta.yaml b/recipes/ucsc-splitfilebycolumn/meta.yaml index 597370af3c27a..62234987b8442 100644 --- a/recipes/ucsc-splitfilebycolumn/meta.yaml +++ b/recipes/ucsc-splitfilebycolumn/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-sqltoxml/meta.yaml b/recipes/ucsc-sqltoxml/meta.yaml index e949e8b8e3457..20a3994bbe807 100644 --- a/recipes/ucsc-sqltoxml/meta.yaml +++ b/recipes/ucsc-sqltoxml/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-stringify/meta.yaml b/recipes/ucsc-stringify/meta.yaml index 8a6af2f271ebd..0091e7f2e3720 100644 --- a/recipes/ucsc-stringify/meta.yaml +++ b/recipes/ucsc-stringify/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-subchar/meta.yaml b/recipes/ucsc-subchar/meta.yaml index 668bcdd3d7b0d..192a9811b16a8 100644 --- a/recipes/ucsc-subchar/meta.yaml +++ b/recipes/ucsc-subchar/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-subcolumn/meta.yaml b/recipes/ucsc-subcolumn/meta.yaml index b89c7726926dd..00a147dbfc4ea 100644 --- a/recipes/ucsc-subcolumn/meta.yaml +++ b/recipes/ucsc-subcolumn/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-taillines/meta.yaml b/recipes/ucsc-taillines/meta.yaml index 85baf4476daa8..475872261a119 100644 --- a/recipes/ucsc-taillines/meta.yaml +++ b/recipes/ucsc-taillines/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-tdbquery/meta.yaml b/recipes/ucsc-tdbquery/meta.yaml index f31668ecdf678..12d6c28f256e8 100644 --- a/recipes/ucsc-tdbquery/meta.yaml +++ b/recipes/ucsc-tdbquery/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-texthistogram/meta.yaml b/recipes/ucsc-texthistogram/meta.yaml index 739c0d115fff9..2335e3d6ee543 100644 --- a/recipes/ucsc-texthistogram/meta.yaml +++ b/recipes/ucsc-texthistogram/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-ticktodate/meta.yaml b/recipes/ucsc-ticktodate/meta.yaml index 39b1d68431703..d3ff7dbd5460a 100644 --- a/recipes/ucsc-ticktodate/meta.yaml +++ b/recipes/ucsc-ticktodate/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-tolower/meta.yaml b/recipes/ucsc-tolower/meta.yaml index 87b754d68db2e..d13b41b1f34dc 100644 --- a/recipes/ucsc-tolower/meta.yaml +++ b/recipes/ucsc-tolower/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-toupper/meta.yaml b/recipes/ucsc-toupper/meta.yaml index add2ce727d75e..7fa2881cf587b 100644 --- a/recipes/ucsc-toupper/meta.yaml +++ b/recipes/ucsc-toupper/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-transmappsltogenepred/meta.yaml b/recipes/ucsc-transmappsltogenepred/meta.yaml index 7cc8cd317e5fa..a10a10aa9d2cd 100644 --- a/recipes/ucsc-transmappsltogenepred/meta.yaml +++ b/recipes/ucsc-transmappsltogenepred/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-trfbig/meta.yaml b/recipes/ucsc-trfbig/meta.yaml index d41b0a2d16905..84876f26af473 100644 --- a/recipes/ucsc-trfbig/meta.yaml +++ b/recipes/ucsc-trfbig/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-twobitdup/meta.yaml b/recipes/ucsc-twobitdup/meta.yaml index c48219e757545..3fab6ac1852bd 100644 --- a/recipes/ucsc-twobitdup/meta.yaml +++ b/recipes/ucsc-twobitdup/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-twobitinfo/meta.yaml b/recipes/ucsc-twobitinfo/meta.yaml index c74fe8e015e4c..fcb032176da33 100644 --- a/recipes/ucsc-twobitinfo/meta.yaml +++ b/recipes/ucsc-twobitinfo/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-twobitmask/meta.yaml b/recipes/ucsc-twobitmask/meta.yaml index ac10b52cb5b57..0c309c9933f7e 100644 --- a/recipes/ucsc-twobitmask/meta.yaml +++ b/recipes/ucsc-twobitmask/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-twobittofa/meta.yaml b/recipes/ucsc-twobittofa/meta.yaml index e0088b4ec7035..07923636d7f67 100644 --- a/recipes/ucsc-twobittofa/meta.yaml +++ b/recipes/ucsc-twobittofa/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-validatefiles/meta.yaml b/recipes/ucsc-validatefiles/meta.yaml index 8d39d253a571d..83a92608accb8 100644 --- a/recipes/ucsc-validatefiles/meta.yaml +++ b/recipes/ucsc-validatefiles/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-validatemanifest/meta.yaml b/recipes/ucsc-validatemanifest/meta.yaml index 0e3b3ac169b7b..d4e26d51a543a 100644 --- a/recipes/ucsc-validatemanifest/meta.yaml +++ b/recipes/ucsc-validatemanifest/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-wigcorrelate/meta.yaml b/recipes/ucsc-wigcorrelate/meta.yaml index 9e8adb94f456e..e961c681fa680 100644 --- a/recipes/ucsc-wigcorrelate/meta.yaml +++ b/recipes/ucsc-wigcorrelate/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-wigtobigwig/meta.yaml b/recipes/ucsc-wigtobigwig/meta.yaml index 537b9051069a1..e5e3dd299a326 100644 --- a/recipes/ucsc-wigtobigwig/meta.yaml +++ b/recipes/ucsc-wigtobigwig/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-wordline/meta.yaml b/recipes/ucsc-wordline/meta.yaml index d9d06b56b5627..8be4914172a19 100644 --- a/recipes/ucsc-wordline/meta.yaml +++ b/recipes/ucsc-wordline/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-xmlcat/meta.yaml b/recipes/ucsc-xmlcat/meta.yaml index 0218780d0ac71..c33e7fb8aaa19 100644 --- a/recipes/ucsc-xmlcat/meta.yaml +++ b/recipes/ucsc-xmlcat/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/ucsc-xmltosql/meta.yaml b/recipes/ucsc-xmltosql/meta.yaml index 74e6e93285ee5..db19e0783fb6d 100644 --- a/recipes/ucsc-xmltosql/meta.yaml +++ b/recipes/ucsc-xmltosql/meta.yaml @@ -18,7 +18,7 @@ source: fn: "{{ program }}" # [osx] build: - number: 0 + number: 1 requirements: build: @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: diff --git a/recipes/variant-effect-predictor/meta.yaml b/recipes/variant-effect-predictor/meta.yaml index 1a5f1ca8d2fd9..8355054474ada 100644 --- a/recipes/variant-effect-predictor/meta.yaml +++ b/recipes/variant-effect-predictor/meta.yaml @@ -7,24 +7,24 @@ source: url: https://github.com/Ensembl/ensembl-tools/archive/release/87.zip build: - number: 0 + number: 1 skip: True # [osx] requirements: build: - gnu-wget - gcc - - perl-threaded + - perl - perl-file-copy-recursive - perl-archive-extract - perl-archive-zip - perl-lwp-simple - perl-lwp-protocol-https - - zlib - - htslib + - zlib {{CONDA_ZLIB}}* + - htslib {{ CONDA_HTSLIB }}* - unzip run: - - perl-threaded + - perl - perl-bioperl ==1.6.924 4 - perl-bio-db-hts - perl-encode-locale @@ -43,8 +43,8 @@ requirements: - perl-lwp-protocol-https - perl-statistics-descriptive - perl-time-hires - - zlib - - htslib + - zlib {{CONDA_ZLIB}}* + - htslib {{ CONDA_HTSLIB }}* test: commands: diff --git a/recipes/variantbam/meta.yaml b/recipes/variantbam/meta.yaml index f473a1b2c6282..34548e36d497b 100644 --- a/recipes/variantbam/meta.yaml +++ b/recipes/variantbam/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - number: 1 + number: 2 skip: True # [osx] source: @@ -20,14 +20,14 @@ source: requirements: build: - gcc # [not osx] - - xz - - bzip2 - - zlib + - xz {{CONDA_XZ}}* + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - xz - - bzip2 - - zlib + - xz {{CONDA_XZ}}* + - bzip2 {{CONDA_BZIP2}}* + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/vcf2maf/meta.yaml b/recipes/vcf2maf/meta.yaml index cf0b24c7cae11..b67f996d8bdf5 100644 --- a/recipes/vcf2maf/meta.yaml +++ b/recipes/vcf2maf/meta.yaml @@ -3,7 +3,7 @@ {% set sha256hash = "44cce0c2f13fea615f31ecf52a2b968d0dd151f9246d6123723fc1cfef7e216f" %} build: - number: 0 + number: 1 skip: True # [osx] since variant-effect-predictor is not there yet package: diff --git a/recipes/vcflib/meta.yaml b/recipes/vcflib/meta.yaml index f266f8c96107f..fdbbc0fcbd301 100644 --- a/recipes/vcflib/meta.yaml +++ b/recipes/vcflib/meta.yaml @@ -7,16 +7,16 @@ source: git_rev: 3e03c7a10098b3888aaa258d4e339ddcdbf3b951 build: - number: 0 + number: 1 skip: True # [osx] requirements: build: - gcc # [linux] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* - libgcc # [linux] test: diff --git a/recipes/vcftools/0.1.10/meta.yaml b/recipes/vcftools/0.1.10/meta.yaml index 78b1a08732962..4b12a33bc0346 100644 --- a/recipes/vcftools/0.1.10/meta.yaml +++ b/recipes/vcftools/0.1.10/meta.yaml @@ -8,19 +8,19 @@ source: sha256: 0680dd38dc41a9fdbb5ddb22d79e0314009e5e464a5bb7b6da4845cce0181a23 build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - perl - - zlib + - zlib {{CONDA_ZLIB}}* - perl-vcftools-vcf ==0.797 run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* - perl-vcftools-vcf ==0.797 test: diff --git a/recipes/vcftools/0.1.11/meta.yaml b/recipes/vcftools/0.1.11/meta.yaml index 80b044edb41e5..eaa3622171d74 100644 --- a/recipes/vcftools/0.1.11/meta.yaml +++ b/recipes/vcftools/0.1.11/meta.yaml @@ -8,16 +8,16 @@ source: sha256: 81b98c8bc93e366e2f0b14eb78e2736ae1c790176939eef88dbf0546ab952aab build: - number: 1 + number: 2 requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* - perl - perl-vcftools-vcf ==0.840 run: - - zlib + - zlib {{CONDA_ZLIB}}* - perl-vcftools-vcf ==0.840 test: diff --git a/recipes/vcftools/meta.yaml b/recipes/vcftools/meta.yaml index 5e8d90526761a..b494e7ea25760 100644 --- a/recipes/vcftools/meta.yaml +++ b/recipes/vcftools/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ sha256 }} build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/vdjer/meta.yaml b/recipes/vdjer/meta.yaml index c0c1dd0433bb0..00d853f361cc6 100644 --- a/recipes/vdjer/meta.yaml +++ b/recipes/vdjer/meta.yaml @@ -9,18 +9,18 @@ source: build: - number: 0 + number: 1 skip: True # [osx] requirements: build: - gcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: diff --git a/recipes/verifybamid/meta.yaml b/recipes/verifybamid/meta.yaml index 43dd5fbc1917a..57ed5a3cf03ad 100644 --- a/recipes/verifybamid/meta.yaml +++ b/recipes/verifybamid/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: {{ name }}LibStatGen.{{ version }}.tgz @@ -18,11 +18,11 @@ requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/verse/meta.yaml b/recipes/verse/meta.yaml index 7694f1fee4306..5fcdcef7e41c8 100644 --- a/recipes/verse/meta.yaml +++ b/recipes/verse/meta.yaml @@ -7,17 +7,17 @@ source: git_rev: e390069b3d1c44340c086c52f5a9c977c8ab0216 build: - number: 0 + number: 1 requirements: build: - gcc # [not osx] - llvm # [osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/vphaser2/meta.yaml b/recipes/vphaser2/meta.yaml index 2c8564533b8dd..bbd9293776034 100644 --- a/recipes/vphaser2/meta.yaml +++ b/recipes/vphaser2/meta.yaml @@ -11,17 +11,17 @@ source: md5: fd22b1c4403903576e62defb51b6ae32 #git_url: https://github.com/broadinstitute/v-phaser2.git #[osx or linux64] build: - number: 4 + number: 5 rpaths: - "$PREFIX/opt/$PKG_NAME-$PKG_VERSION" - lib/ requirements: build: - bamtools - - zlib + - zlib {{CONDA_ZLIB}}* run: - bamtools - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: - 'vphaser2 | grep "BAM file"' diff --git a/recipes/vsearch/meta.yaml b/recipes/vsearch/meta.yaml index e4c7196c743bd..b75f9ec3aa9c4 100644 --- a/recipes/vsearch/meta.yaml +++ b/recipes/vsearch/meta.yaml @@ -12,7 +12,7 @@ source: sha256: {{ hash }} build: - number: 0 + number: 1 requirements: build: diff --git a/recipes/vt/meta.yaml b/recipes/vt/meta.yaml index 87f410f316395..5db8001682c49 100644 --- a/recipes/vt/meta.yaml +++ b/recipes/vt/meta.yaml @@ -7,14 +7,14 @@ source: url: https://github.com/atks/vt/archive/15f90de5.tar.gz build: - number: 1 + number: 2 skip: True # [osx] requirements: build: - - zlib + - zlib {{CONDA_ZLIB}}* run: - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/wgsim/meta.yaml b/recipes/wgsim/meta.yaml index 92ec47070f665..a7c79f24da5e5 100644 --- a/recipes/wgsim/meta.yaml +++ b/recipes/wgsim/meta.yaml @@ -12,11 +12,11 @@ requirements: - gcc # [not osx] - llvm # [osx] - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* run: - libgcc # [not osx] - - zlib + - zlib {{CONDA_ZLIB}}* test: commands: diff --git a/recipes/wiggletools/meta.yaml b/recipes/wiggletools/meta.yaml index c86ed5dc3d5b7..da579c25ed586 100644 --- a/recipes/wiggletools/meta.yaml +++ b/recipes/wiggletools/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - number: 0 + number: 1 source: fn: wiggletools-{{ version }}.tar.gz diff --git a/recipes/xtandem/meta.yaml b/recipes/xtandem/meta.yaml index 2d30d6b4cb0ad..3be8be77274da 100644 --- a/recipes/xtandem/meta.yaml +++ b/recipes/xtandem/meta.yaml @@ -8,7 +8,7 @@ package: version: 15.12.15.2 build: - number: 0 + number: 1 skip: False source: @@ -21,11 +21,11 @@ source: requirements: build: - gcc - - zlib + - zlib {{CONDA_ZLIB}}* - expat run: - libgcc - - zlib + - zlib {{CONDA_ZLIB}}* - expat test: diff --git a/scripts/env_matrix.yml b/scripts/env_matrix.yml index 9dcb4e9059588..4588f3539ec7c 100644 --- a/scripts/env_matrix.yml +++ b/scripts/env_matrix.yml @@ -2,7 +2,7 @@ CONDA_PY: - 27 - 35 - 36 -CONDA_HTSLIB: "1.6" +CONDA_HTSLIB: "1.7" CONDA_BOOST: "1.64" CONDA_R: "3.4.1" CONDA_PERL: "5.22.0" @@ -12,6 +12,6 @@ CONDA_GSL: "1.16" CONDA_GMP: "5.1" CONDA_HDF5: "1.8.17" MACOSX_DEPLOYMENT_TARGET: "10.9" -CONDA_ZLIB: "1.2.8" +CONDA_ZLIB: "1.2.11" CONDA_BZIP2: "1.0" CONDA_XZ: "5.2" diff --git a/scripts/ucsc/template-meta.yaml b/scripts/ucsc/template-meta.yaml index d7bcc30b8b7c6..428a866b8bfa4 100644 --- a/scripts/ucsc/template-meta.yaml +++ b/scripts/ucsc/template-meta.yaml @@ -27,7 +27,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] run: - libgcc # [linux] @@ -35,7 +35,7 @@ requirements: - libuuid # [linux] - mysql-connector-c # [linux] - openssl # [linux] - - zlib # [linux] + - zlib {{CONDA_ZLIB}}* # [linux] test: commands: