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setup.py
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setup.py
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#!/usr/bin/env python3
# -*- coding: utf-8 -*-
from setuptools import setup, Command
import os
class CleanCommand(Command):
"""
Custom clean command to tidy up the project root.
http://bit.ly/2bw7xXb
"""
user_options = []
def initialize_options(self):
pass
def finalize_options(self):
pass
@staticmethod
def run():
os.system('rm -vrf ./build ./dist ./*.pyc ./*.tgz ./*.egg-info')
PACKAGES = [
'buddysuite',
]
DEPENDENCIES = [
'pytest',
'pytest-xdist',
'pytest-cov',
'numpy',
'scipy',
'six',
'dill',
'suds-py3',
'biopython>=1.69',
'dendropy',
'matplotlib',
]
KEYWORDS = [
'computational biology',
'computational genetics',
'genetics',
'genome',
'phylogenetics',
'biology',
'bioinformatics'
]
ENTRY_POINTS = {
'console_scripts': [
'alignbuddy = buddysuite.AlignBuddy:main',
'databasebuddy = buddysuite.DatabaseBuddy:main',
'phylobuddy = buddysuite.PhyloBuddy:main',
'seqbuddy = buddysuite.SeqBuddy:main',
'buddysuite = buddysuite.BuddySuite:main'
]
}
setup(name='buddysuite',
version='1.4.0',
description='BuddySuite is a collection of command line utilities written in Python for '
'working with biological data.',
long_description=open(os.path.join(os.path.dirname(__file__), 'README.rst'), encoding="utf-8").read(),
author='Stephen Bond',
maintainer='Stephen Bond',
author_email='biologyguy@gmail.com',
url='https://github.com/biologyguy/BuddySuite',
packages=PACKAGES,
package_data={'buddysuite': ['dependencies/*.js', 'README.md', 'LICENSE.txt', 'privacy']},
setup_requires=['numpy'],
install_requires=DEPENDENCIES,
entry_points=ENTRY_POINTS,
license='Public Domain',
keywords=KEYWORDS,
zip_safe=False,
cmdclass={'clean': CleanCommand},
classifiers=[
'Development Status :: 5 - Production/Stable',
'Topic :: Scientific/Engineering',
'Topic :: Scientific/Engineering :: Bio-Informatics',
'Topic :: Software Development :: Libraries :: Python Modules',
'Intended Audience :: Science/Research',
'Operating System :: MacOS :: MacOS X',
'Operating System :: POSIX :: Linux',
'Operating System :: Microsoft :: Windows',
'Programming Language :: Python :: 3',
'Programming Language :: Python :: 3.4',
'Programming Language :: Python :: 3.5',
'Programming Language :: Python :: 3 :: Only',
'License :: Public Domain',
'Natural Language :: English',
'Environment :: Console',
],
)