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SMPDB ID (pathways) in MyGene.info is wrong #64

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kevinxin90 opened this issue Mar 6, 2019 · 0 comments

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kevinxin90 commented Mar 6, 2019

It seems the SMPDB ID (pathways) in MyGene.info is missing a couple of 0s.

For example, the "codeine action pathway" has an SMPDB ID: SMP0000405. (see http://smpdb.ca/view/SMP0000405).

But in MyGene.info, the ID is SMP00405. (see http://mygene.info/v3/query?q=pathway.smpdb.id:SMP00405&fields=pathway.smpdb).

Looks like CPDB (where we get pathway info from) is having the wrong information. We need to fix it in our CPDB parser.

kevinxin90 added the bug label

newgene assigned kevinxin90

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