Invalid cross-device link when posting results

[donkirkby]

The first run was successfully processed in Kive, but MISEQ_MONITOR failed to post the results. The error was:

Traceback (most recent call last):
  File "MISEQ_MONITOR.py", line 504, in main
    download_results(kive_runs, root, run_folder)
  File "MISEQ_MONITOR.py", line 423, in download_results
    os.rename(source, destination)
OSError: [Errno 18] Invalid cross-device link

Analysis

It seems that os.rename() is not the same as mv in the shell. From the documentation:

The operation may fail on some Unix flavors if src and dst are on different filesystems.

Try using shutil.move() instead.