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Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
Compacted and colored de Bruijn graph construction and querying
Simple HTML5 Charts using the <canvas> tag
The lean application framework for Python. Build sophisticated user interfaces with a simple Python API. Run your apps in the terminal and a web browser.
Machine learning platform for bacterial genome sequence analysis
RMDL: Random Multimodel Deep Learning for Classification
Information about what kinds of things people put in lab handbooks.
AMRFinderPlus - Identify AMR genes and point mutations, and virulence and stress resistance genes in assembled bacterial nucleotide and protein sequence.
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
This is the development home of the workflow management system Snakemake. For general information, see
The new Windows Terminal and the original Windows console host, all in the same place!
The high-performance database for modern applications
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
Phylotyper: Predicting subtypes from WGS using phylogenetic trees and ancestral reconstruction
Ray is a unified framework for scaling AI and Python applications. Ray consists of a core distributed runtime and a set of AI Libraries for accelerating ML workloads.
In silico prediction of E. coli serotype
Antimicrobial Resistance Identification By Assembly
Query NCBI, download, and assemble microbial genomes
Predictive marker discovery for groups; binary data, genomic data (single nucleotide variants), arbitrary character data.
A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!
Subtype Salmonella enterica subsp. enterica serovar Heidelberg genomes using an in-silico 33 bp k-mer subtyping method developed by Genevieve Labbe, Roger Johnson, et al from the Public Health Agen…
The Genomic Epidemiology Application Ontology describes the genomics, laboratory, clinical and epidemiological contextual information required to support data sharing and integration for foodborne …