{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":27087846,"defaultBranch":"main","name":"perses","ownerLogin":"choderalab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2014-11-24T18:04:18.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/4217481?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1700162918.0","currentOid":""},"activityList":{"items":[{"before":"7eaa1626c7c935f9cc4156f9a53ced3694b40bf0","after":"f3aacde3588e5b90e67a21052d914a033d3c087b","ref":"refs/heads/main","pushedAt":"2023-12-19T21:52:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"Update cli.py","shortMessageHtmlLink":"Update cli.py"}},{"before":"bf6b1f72c0eabcaa9f3a0abb6a3641840de9d50e","after":"8336ca0255838b46a1833d675b4b1ea7e053cee7","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T21:49:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"forgot to set cudatoolkit==11.7","shortMessageHtmlLink":"forgot to set cudatoolkit==11.7"}},{"before":"1c84d50d81a6f4adb6171f3edb960fb7435c2048","after":"bf6b1f72c0eabcaa9f3a0abb6a3641840de9d50e","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:36:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"don't need to cache on ec2 instance","shortMessageHtmlLink":"don't need to cache on ec2 instance"}},{"before":"85aaf37596481e4a70214421fda9862fc5ec7101","after":"1c84d50d81a6f4adb6171f3edb960fb7435c2048","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:35:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"we don't want shimp on GPU","shortMessageHtmlLink":"we don't want shimp on GPU"}},{"before":"20c516f8ea74aa3f25fc65997fba91e924f78ee2","after":"85aaf37596481e4a70214421fda9862fc5ec7101","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:34:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"fix python version","shortMessageHtmlLink":"fix python version"}},{"before":"0f727bbef3dd4b18b768fee295ad68b43e385293","after":"20c516f8ea74aa3f25fc65997fba91e924f78ee2","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:33:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"Fix yaml syntax","shortMessageHtmlLink":"Fix yaml syntax"}},{"before":"74bfe33c3876159f8f64d3c924ec9f72cd3d9a8c","after":"0f727bbef3dd4b18b768fee295ad68b43e385293","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:32:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"just do what we do on CPU","shortMessageHtmlLink":"just do what we do on CPU"}},{"before":"7dae2b78d66622279118cbdd56723869f38088e8","after":"74bfe33c3876159f8f64d3c924ec9f72cd3d9a8c","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:30:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"might need to update the image we use for GPU tests","shortMessageHtmlLink":"might need to update the image we use for GPU tests"}},{"before":"d140e17c0d78a0637d580754023f96df4d5123eb","after":"7dae2b78d66622279118cbdd56723869f38088e8","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T20:13:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"fix syntax","shortMessageHtmlLink":"fix syntax"}},{"before":"74aac7380a043656b68a9ca68cbe20d74d04df45","after":"d140e17c0d78a0637d580754023f96df4d5123eb","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T19:54:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"update micromamba setup and fix channel list","shortMessageHtmlLink":"update micromamba setup and fix channel list"}},{"before":"a3520d4dbaf89cb9c24ccf9f86937fa35cd425cd","after":"74aac7380a043656b68a9ca68cbe20d74d04df45","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T19:46:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"test gpu with openmm 8.1.0rc1","shortMessageHtmlLink":"test gpu with openmm 8.1.0rc1"}},{"before":"8e179498ba7f99a7551598319ea0194f70ff1c75","after":null,"ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T19:28:38.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"}},{"before":null,"after":"a3520d4dbaf89cb9c24ccf9f86937fa35cd425cd","ref":"refs/heads/test/openmm_8.1.0rc1","pushedAt":"2023-11-16T17:32:26.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"test 8.1.0rc1","shortMessageHtmlLink":"test 8.1.0rc1"}},{"before":"b498eaf7458d792fc91d2e936178ddb6f57d2e3e","after":"8e179498ba7f99a7551598319ea0194f70ff1c75","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T17:07:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"minor change","shortMessageHtmlLink":"minor change"}},{"before":"2e05776973cad02d4e65ce76ee5c4b8e7b29a4d4","after":"b498eaf7458d792fc91d2e936178ddb6f57d2e3e","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:58:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"Using exact version string for openmm","shortMessageHtmlLink":"Using exact version string for openmm"}},{"before":"697ab84ca8a3787a9e72d7aa8d333f8ff3b787e2","after":"2e05776973cad02d4e65ce76ee5c4b8e7b29a4d4","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:52:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"test if just openmm with strict channels works","shortMessageHtmlLink":"test if just openmm with strict channels works"}},{"before":"fb4c9e65288196282357e749925f3a704ef15e7e","after":"697ab84ca8a3787a9e72d7aa8d333f8ff3b787e2","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:48:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"fix pins","shortMessageHtmlLink":"fix pins"}},{"before":"36c10ade5280654c69312a55e72b52e578800127","after":"fb4c9e65288196282357e749925f3a704ef15e7e","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:46:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"Only test openmm dev/rc","shortMessageHtmlLink":"Only test openmm dev/rc"}},{"before":"4e0b6f2d88d48764a27b9621be4b3c5839a6ac09","after":"36c10ade5280654c69312a55e72b52e578800127","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:44:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"openmm 8.1 for gpu test/CI","shortMessageHtmlLink":"openmm 8.1 for gpu test/CI"}},{"before":"a6714a230371def6f03e9f7ff9ea8fd0a7ae8c73","after":"4e0b6f2d88d48764a27b9621be4b3c5839a6ac09","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-16T16:40:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"Forcing channel priority. Specifying openmm 8.1","shortMessageHtmlLink":"Forcing channel priority. Specifying openmm 8.1"}},{"before":null,"after":"a6714a230371def6f03e9f7ff9ea8fd0a7ae8c73","ref":"refs/heads/test/openmm_8.1","pushedAt":"2023-11-02T20:32:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"test openmm 8.1","shortMessageHtmlLink":"test openmm 8.1"}},{"before":"7eaa1626c7c935f9cc4156f9a53ced3694b40bf0","after":null,"ref":"refs/heads/gh-readonly-queue/main/pr-1238-6c6419f96878be3003673f68d2e34d70826191dc","pushedAt":"2023-10-23T22:20:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"github-merge-queue[bot]","name":null,"path":"/apps/github-merge-queue","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9919?s=80&v=4"}},{"before":"6c6419f96878be3003673f68d2e34d70826191dc","after":"7eaa1626c7c935f9cc4156f9a53ced3694b40bf0","ref":"refs/heads/main","pushedAt":"2023-10-23T22:20:32.000Z","pushType":"merge_queue_merge","commitsCount":1,"pusher":{"login":"github-merge-queue[bot]","name":null,"path":"/apps/github-merge-queue","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9919?s=80&v=4"},"commit":{"message":"Fix incorrect implementation of logsumexp (#1238)\n\n* Off by a_n.max() for the final value, needs to be added back in after\nthe call to log\n* Use the scipy.special.logsumexp rather than reimplement","shortMessageHtmlLink":"Fix incorrect implementation of logsumexp (#1238)"}},{"before":null,"after":"7eaa1626c7c935f9cc4156f9a53ced3694b40bf0","ref":"refs/heads/gh-readonly-queue/main/pr-1238-6c6419f96878be3003673f68d2e34d70826191dc","pushedAt":"2023-10-23T21:55:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"github-merge-queue[bot]","name":null,"path":"/apps/github-merge-queue","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/9919?s=80&v=4"},"commit":{"message":"Fix incorrect implementation of logsumexp (#1238)\n\n* Off by a_n.max() for the final value, needs to be added back in after\nthe call to log\n* Use the scipy.special.logsumexp rather than reimplement","shortMessageHtmlLink":"Fix incorrect implementation of logsumexp (#1238)"}},{"before":null,"after":"7116a3938838c46e8a55d843b1e95dc361f71d30","ref":"refs/heads/bugfix/use-scipy-log-sum-exp","pushedAt":"2023-10-19T22:09:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mikemhenry","name":"Mike Henry","path":"/mikemhenry","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/11765982?s=80&v=4"},"commit":{"message":"Fix incorrect implementation of logsumexp\n\n* Off by a_n.max() for the final value, needs to be added back in after\nthe call to log\n* Use the scipy.special.logsumexp rather than reimplement","shortMessageHtmlLink":"Fix incorrect implementation of logsumexp"}},{"before":"64859adc2a8e9648fa7cb5caeb74d57f4316fbd0","after":"1cd82d9a307111c3f83803181a63b12967848dc8","ref":"refs/heads/927-benchmarking-improvements","pushedAt":"2023-10-19T18:57:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"legacy flag for old structure","shortMessageHtmlLink":"legacy flag for old structure"}},{"before":"d894a1e843a4a357dd37dcdad201cc149e404472","after":"64859adc2a8e9648fa7cb5caeb74d57f4316fbd0","ref":"refs/heads/927-benchmarking-improvements","pushedAt":"2023-10-18T04:46:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"cli edge file name","shortMessageHtmlLink":"cli edge file name"}},{"before":"67827fa67aac1aec18fd0b58f353691d26b119fb","after":"d894a1e843a4a357dd37dcdad201cc149e404472","ref":"refs/heads/927-benchmarking-improvements","pushedAt":"2023-10-18T04:45:29.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"Support legacy edges plbenchmarks","shortMessageHtmlLink":"Support legacy edges plbenchmarks"}},{"before":"6e78834ddcfdc144ec9d3b4071344894d2b7c355","after":"e9dff992d601d441dd3cb780000ebb9245bc35df","ref":"refs/heads/test/test_if_ffast_fix_works","pushedAt":"2023-09-28T15:11:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"removing extra pip :)","shortMessageHtmlLink":"removing extra pip :)"}},{"before":"e4dfbedce252a5a94ef4e83c68f401b59ceb1e8a","after":"6e78834ddcfdc144ec9d3b4071344894d2b7c355","ref":"refs/heads/test/test_if_ffast_fix_works","pushedAt":"2023-09-28T15:09:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ijpulidos","name":"Iván Pulido","path":"/ijpulidos","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2949729?s=80&v=4"},"commit":{"message":"re-enabling failing Openmm8 tests","shortMessageHtmlLink":"re-enabling failing Openmm8 tests"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAADzjOEOgA","startCursor":null,"endCursor":null}},"title":"Activity · choderalab/perses"}