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PubMedToSheet

This is a python script which facilitates the creation of a sheet and import of pubmed data in a specified format

Required modules: Biopython (for Entrez/Pubmed access), TKinter, OpenPyXl (for Excel functionality)

A spreadsheet is generated and populated with studies:

  1. A study is looked up via its PMID (PubMed ID Number).

  2. A preview of the study appears with its relevant data. A confirmation dialog asks to confirm the desired study, and lists potential errors in data (i.e. missing data/fields)

  3. Upon confirmation, the study is added to the sheet. The sheet can be saved at any time.

Feel free to use, modify, etc. Credit is appreciated. MIT License.

Please share any issues or bugs with me via email or the issues page

Upcoming features:

  • Ability to add to existing sheets
  • Ability to process list of PMID's
  • Ability to select features to be included in sheet