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javadoc.xml
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javadoc.xml
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<project name="CDK" default="html" basedir=".">
<property file="build.props"/>
<!-- $Id$ -->
<property name="vecmath.src" value="gcj/vecmath" />
<property name="vecmath.javadoc.dir" value="doc/vecmath/api" />
<property name="src" value="src" />
<property name="javadoc.dir" value="doc/cdk-javadoc-${version}" />
<property name="doxygen.dir" value="doc/doxygen" />
<property name="pathtojava3d" value="" />
<!-- directories -->
<property name="build" value="build" />
<property name="lib" value="jar" />
<property name="devellib" value="develjar" />
<!-- Used in the html task to properly link to java library classes -->
<property name="javaURL" value="http://java.sun.com/j2se/1.5.0/docs/api/"/>
<path id="project.class.path">
<pathelement location="." />
<fileset dir="jar">
<include name="*.jar" />
</fileset>
<fileset dir="${pathtojava3d}">
<include name="*.jar" />
</fileset>
</path>
<taskdef name="doxygen" classname="org.doxygen.tools.DoxygenTask"
classpath="develjar/ant_doxygen.jar" />
<target name="doxygen" id="doxygen">
<mkdir dir="${doxygen.dir}" />
<doxygen>
<property name="INPUT" value="src/" />
<property name="PROJECT_NAME" value="The Chemistry Development Kit" />
<property name="OUTPUT_DIRECTORY" value="${doxygen.dir}" />
<property name="OPTIMIZE_OUTPUT_JAVA" value="YES" />
<property name="UML_LOOK" value="YES" />
<property name="ALIASES" value='"cdk.module=Is part of the CDK module:"' />
</doxygen>
</target>
<target name="html" depends="compileTaglets">
<mkdir dir="${javadoc.dir}" />
<!-- Call javacc target in build.xml to re-generate the source code -->
<ant antfile="build.xml" target="javacc"/>
<tstamp>
<format property="TODAY_SVN" pattern="yyyyMMdd" locale="en" />
</tstamp>
<javadoc destdir="${javadoc.dir}"
author="true" version="true" use="true"
public="true"
windowtitle="CDK API - version ${TODAY_SVN}">
<classpath>
<pathelement location="." />
<fileset dir="jar">
<include name="*.jar" />
</fileset>
<fileset dir="jar/jena">
<include name="*.jar" />
</fileset>
<dirset dir="src/main">
<include name="net/**/*"/>
</dirset>
</classpath>
<tag name="cdk.set" scope="all" description="Belongs to the set:" />
<tag name="cdk.keyword" scope="all" description="Keywords:" />
<tag name="cdk.created" scope="all" description="Created on:" />
<tag name="cdk.require" scope="all" description="Requires:" />
<tag name="cdk.depends" scope="all" description="Required library to be able to run this class:" />
<tag name="cdk.builddepends" scope="all" description="Required library to be able to compile this class:" />
<tag name="cdk.todo" scope="all" description="To do:" />
<tag name="cdk.license" scope="all" description="License:" />
<taglet name="net.sf.cdk.tools.doclets.CDKCiteTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKModuleTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKBugTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKDictRefTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKInChITaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKThreadSafeTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKThreadNonSafeTaglet" path="jar/xom-1.1.jar:src/main" />
<taglet name="net.sf.cdk.tools.doclets.CDKGitTaglet" path="jar/xom-1.1.jar:src/main" />
<packageset dir="${src}/main" defaultexcludes="yes">
<include name="org/openscience/cdk/**" />
</packageset>
<link href="${javaURL}"/>
</javadoc>
</target>
<target name="vecmath.html">
<mkdir dir="${vecmath.javadoc.dir}" />
<javadoc destdir="${vecmath.javadoc.dir}"
author="true" version="true" use="true"
public="true"
windowtitle="VecMath API">
<classpath refid="project.class.path" />
<packageset dir="${vecmath.src}" defaultexcludes="yes">
<include name="javax/vecmath/**" />
</packageset>
</javadoc>
</target>
<target name="jjdoc" description="Create JJDoc documentation from the .jj file">
<mkdir dir="doc/iupac-parser"/>
<jjdoc target="${src}/main/org/openscience/cdk/iupac/parser/NomParser.jj"
outputfile="doc/iupac-parser/ParserBNF.html"
javacchome="jar"/>
</target>
<target name="ojdcheck" depends="compileDocTests">
<antcall target="ojdcheck-module"><param name="module" value="interfaces"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="core"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="cip"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="data"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="datadebug"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="nonotify"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="standard"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="atomtype"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="dict"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="io"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="ioformats"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="iordf"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="inchi"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="extra"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="fingerprint"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="formula"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="render"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="reaction"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="libiocml"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="libiomd"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="log4j"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="builder3d"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="smiles"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="smarts"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="sdg"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="tautomer"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="forcefield"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="pdb"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsar"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsaratomic"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsarbond"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsarionpot"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsarmolecular"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="qsarprotein"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="pcore"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="structgen"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="valencycheck"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="charges"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="diff"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="smsd"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="signature"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="renderawt"/></antcall>
<antcall target="ojdcheck-module"><param name="module" value="renderbasic"/></antcall>
</target>
<target name="ojdcheck-module">
<mkdir dir="reports/ojdcheck/"/>
<mkdir dir="${build}/src/${module}"/>
<copy todir="${build}/src/${module}">
<fileset dir="${src}/main">
<includesfile name="${build}/${module}.javafiles"/>
</fileset>
</copy>
<!-- check for availability for meta info files -->
<available file="${metainf}/${module}.cdkdepends" property="module.cdkdepends.present"/>
<available file="${metainf}/${module}.libdepends" property="module.libdepends.present"/>
<available file="${metainf}/${module}.devellibdepends" property="module.devellibdepends.present"/>
<javadoc private="false" public="true">
<classpath>
<fileset dir="${dist}/jar" >
<exclude name="**/*" unless="module.cdkdepends.present" />
<includesfile name="${metainf}/${module}.cdkdepends" if="module.cdkdepends.present" />
</fileset>
<fileset dir="${lib}" >
<exclude name="**/*" unless="module.libdepends.present" />
<includesfile name="${metainf}/${module}.libdepends" if="module.libdepends.present" />
</fileset>
<fileset dir="${devellib}">
<exclude name="**/*" unless="module.devellibdepends.present" />
<includesfile name="${metainf}/${module}.devellibdepends" if="module.devellibdepends.present" />
</fileset>
</classpath>
<doclet name="com.github.ojdcheck.OpenJavaDocCheck"
path="develjar/ojdcheck.jar:src/main">
<param name="-xhtml"/>
<param name="-file"
value="reports/ojdcheck/${module}.html"/>
<param name="-tests"
value="net.sf.cdk.tools.checkdoctest.MissingGithashTagletTest,net.sf.cdk.tools.checkdoctest.MissingModuleTagletTest,net.sf.cdk.tools.checkdoctest.IncorrectBugNumberTagletTest"/>
</doclet>
<sourcepath>
<pathelement path="${build}/src/${module}"/>
</sourcepath>
</javadoc>
</target>
<target id="check" name="check">
<condition property="isMacOsX">
<and>
<os family="mac"/>
<os family="unix"/>
</and>
</condition>
</target>
<target name="compileTaglets" id="compileTaglets" depends="check, compileTaglets.MacOSX, compileTaglets.Other" />
<target name="compileTaglets.MacOSX" id="compileTaglets.MacOSX" if="isMacOsX">
<javac srcdir="src" destdir="src"
includes="*Taglet.java" debug="on" optimize="off"/>
</target>
<target name="compileTaglets.Other" id="compileTaglets.Other" unless="isMacOsX">
<javac srcdir="src/main" destdir="src/main"
includes="net/sf/cdk/tools/**/*Taglet.java" debug="on" optimize="off">
<classpath>
<fileset dir="jar/">
<include name="xom-1.1.jar" />
</fileset>
</classpath>
</javac>
</target>
<target name="compileDocTests" id="compileDocTests"
depends="check">
<javac srcdir="src/main" destdir="src/main"
includes="net/sf/cdk/tools/checkdoctest/*Test.java"
debug="on" optimize="off">
<classpath>
<fileset dir="develjar/">
<include name="ojdcheck.jar" />
</fileset>
</classpath>
</javac>
</target>
</project>