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Test failed using test data "tgraph.vcf/fa" #13

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wjwei-handsome opened this issue Nov 13, 2020 · 0 comments
Open

Test failed using test data "tgraph.vcf/fa" #13

wjwei-handsome opened this issue Nov 13, 2020 · 0 comments

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@wjwei-handsome
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Hello,when I use command:
svaha2 -r tgraph.fa -v tgraph.vcf > test.gfa
to generate GFA file,I failed with the error info:

`FASTA index found for tgraph.fa
Parsed fasta index with 1 entries.
Loading variants from tgraph.vcf
Parsed 6 variants.
Created map of contig to breakpoints from variants.
Contig x has 12 breakpoints.

Adding max-node-length breakpoints.
Contig x has 14 breakpoints.
Sorted and uniquified breakpoints
Building reference backbone for x.
terminate called after throwing an instance of 'std::out_of_range'
what(): at: key not present
Aborted`

I need your help,please!

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