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Commits on May 3, 2022

• corrected "comb" option in calc_zscoredTfTfOverlaps.m

  emiraldi

  committedMay 3, 2022
  c09a754

Commits on Feb 15, 2021

• ensured yMax > 0 for any parameters

  emiraldi

  committedFeb 15, 2021
  2b39c6e

Commits on Feb 12, 2021

• contruct prior bat file

  

  Joe Wayman

  authored and

  Joe Wayman

  committedFeb 12, 2021
  6ad462e

Commits on Feb 9, 2021

• heatmap visualization of per-TF AUPRs

  emiraldi

  committedFeb 9, 2021
  c100c91

Commits on Aug 27, 2020

• edit annotation of calcR2predFromStabilities.m

  emiraldi

  committedAug 27, 2020
  cf64cc0

Commits on Aug 11, 2020

• adding priorConstruction directory

  

  Joe Wayman

  authored and

  Joe Wayman

  committedAug 11, 2020
  5232291

• added ATAC-seq prior construction code

  

  Joe Wayman

  authored and

  Joe Wayman

  committedAug 11, 2020
  8f15623

Commits on Aug 5, 2020

• add gfortran info to README.md

  emiraldi

  committedAug 5, 2020
  992554e

Commits on Dec 3, 2019

• update file link README

  emiraldi

  committedDec 3, 2019
  9e2dacd

• update Th17 README

  emiraldi

  committedDec 3, 2019
  02bd246

• add README for Th17_example

  emiraldi

  committedDec 3, 2019
  c29c6df

• updated README main

  emiraldi

  committedDec 3, 2019
  ef28260

Commits on Jul 16, 2019

• TF-TF module codebase added: Th17_example/example_Th17_tfTfModules.m

  emiraldi

  committedJul 16, 2019
  2323ca7

Commits on Jul 12, 2019

• added README.md to scTRN

  emiraldi

  committedJul 12, 2019
  6051efb

• added mouse genesets for GSEA in scTRN folder

  emiraldi

  committedJul 12, 2019
  2e7cb21

Commits on Jul 5, 2019

• scripts for Th17 core determination added: tfTargets_GSEA.sh, vis_th17_coreAnalysis.m, filter_Th17_TRNs_by_pcorr.sh

  emiraldi

  committedJul 5, 2019
  5a6517e

Commits on Jul 3, 2019

• max / mean-combine TRN code added to Th17_example folder combine_Th17_TRNs.m

  emiraldi

  committedJul 3, 2019
  4fbc973

Commits on Jun 28, 2019

• added GSEA of TF targets for human databases (tfTargets_GSEA_loop.sh) and heatmap vis (visGSEAenrich_heatmaps_comb.m)

  emiraldi

  committedJun 28, 2019
  6fa969d

Commits on Feb 19, 2019

• update article link

  emiraldi

  committedFeb 19, 2019
  2f512ac

Commits on Nov 19, 2018

• scripts added for Th17 core TRN analysis, see scTRN/th17_coreAnalysis.m example

  emiraldi

  committedNov 19, 2018
  eca7028

Commits on Nov 16, 2018

• Add y-axis label for full TRN TF degree visualzation.

  emiraldi

  committedNov 16, 2018
  06cfa41

• For degree visualization of select TFs, flip to correct list order in visTfDegree_priorOverlaps.m

  emiraldi

  committedNov 16, 2018
  0a752bc

• removing P-R results

  emiraldi

  committedNov 16, 2018
  c5e1c5f

• TRN TF degree visualization scripts added

  emiraldi

  committedNov 16, 2018
  dae7aa4

Commits on Aug 27, 2018

• r2pred correction

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  747730a

• update R2pred

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  4fce127

• update to README.md

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  96a0a49

• README.md update

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  6ba61a6

• update to README.md

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  3b9a9f4

• adding workflow for time-series gene expression data, using linear differential equations modeling, as originally described by Bonneau et al. (2006) Genome Biology.

  

  Emily Miraldi

  authored and

  Emily Miraldi

  committedAug 27, 2018
  17fc871

Commits on Jul 27, 2018

• Merge pull request #2 from dnguyen179/master

  emiraldi

  committedJul 27, 2018
  f1fb3f1

• add flag when gene model is greater than cutoff

  

  Nguyen

  committedJul 27, 2018
  ba0baeb

Commits on May 19, 2018

• Merge pull request #1 from emiraldi/infTRN_lassoStARS_edits_wayman

  emiraldi

  committedMay 19, 2018
  9856df4

• modified import gene expression data

  JosephWayman

  committedMay 19, 2018
  44c4d4c

Commits on May 18, 2018

• commented out glmnetplot in lambda range finding and added a function combineTRNs.m to combine TRNs

  emiraldi

  committedMay 18, 2018
  9f110a9

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