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ENA Documentation

Welcome to the guidelines for submission and retrieval for the European Nucleotide Archive. Please use the links to find instructions specific to your needs. If you're completely new to ENA, you can see an introductory webinar at the bottom of the page.

.. toctree::
   :caption: ENA Data Submission
   :maxdepth: 1

   submit/general-guide
   submit/study
   submit/samples
   submit/fileprep
   submit/reads
   submit/assembly
   submit/sequence
   submit/analyses

.. toctree::
   :caption: ENA Data Discovery & Retrieval
   :maxdepth: 1

   retrieval/general-guide
   retrieval/ena-project
   retrieval/file-download
   retrieval/advanced-search
   retrieval/programmatic-access

.. toctree::
   :caption: ENA Data Updates
   :maxdepth: 1

   update/metadata
   update/assembly
   update/sequence

.. toctree::
   :caption: Tips and FAQs
   :maxdepth: 1

   faq/release
   faq/spatiotemporal-metadata
   faq/runs
   faq/taxonomy
   faq/taxonomy_requests
   faq/metagenomes
   faq/missing-values
   faq/locus_tags
   faq/archive-generated-files
   faq/archive-generated-analysis-files
   faq/analysis-and-accessions.rst
   faq/third_party_tools
   faq/data_brokering
   faq/orcid-claiming


Introductory Webinar