From 7598384342f77573cd12564afa118d1cc54527f7 Mon Sep 17 00:00:00 2001 From: Grant Andersen Date: Thu, 7 Mar 2024 22:59:49 -0600 Subject: [PATCH 1/3] Updating dependencies. --- .gitignore | 28 +- .pre-commit-config.yaml | 6 + noxfile.py | 23 +- poetry.lock | 2499 ++++++++++++----------- pyproject.toml | 26 +- tests/test_pipeline/test_spaczzruler.py | 8 +- 6 files changed, 1329 insertions(+), 1261 deletions(-) diff --git a/.gitignore b/.gitignore index 90ca454..f056214 100644 --- a/.gitignore +++ b/.gitignore @@ -85,7 +85,7 @@ ipython_config.py # pyenv # For a library or package, you might want to ignore these files since the code is # intended to run in multiple environments; otherwise, check them in: -# .python-version +.python-version # pipenv # According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. @@ -94,6 +94,21 @@ ipython_config.py # install all needed dependencies. #Pipfile.lock +# poetry +# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. +# This is especially recommended for binary packages to ensure reproducibility, and is more +# commonly ignored for libraries. +# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control +#poetry.lock + +# pdm +# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. +#pdm.lock +# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it +# in version control. +# https://pdm.fming.dev/#use-with-ide +.pdm.toml + # PEP 582; used by e.g. github.com/David-OConnor/pyflow __pypackages__/ @@ -137,8 +152,12 @@ dmypy.json # Cython debug symbols cython_debug/ -# Pyenv -.python-version +# PyCharm +# JetBrains specific template is maintained in a separate JetBrains.gitignore that can +# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore +# and can be added to the global gitignore or merged into this file. For a more nuclear +# option (not recommended) you can uncomment the following to ignore the entire idea folder. +.idea/ # VSCode .vscode @@ -146,6 +165,3 @@ cython_debug/ # Mac .DS_Store - -# Notebooks -example*/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index b818f50..8dfd837 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -24,6 +24,12 @@ repos: args: ["--markdown-linebreak-ext=md"] - repo: local hooks: + - id: poetry-check + name: poetry-check + entry: poetry check --lock + always_run: true + pass_filenames: false + language: system - id: isort name: isort entry: poetry run isort diff --git a/noxfile.py b/noxfile.py index 7c2d431..2ac0842 100644 --- a/noxfile.py +++ b/noxfile.py @@ -1,4 +1,9 @@ -"""Nox sessions.""" +"""Nox sessions. + +Even though `nox` is part of the full spaczz dev-install, nothing outside of the stdlib +and `nox` itself should be imported in this module. This is because CI won't have any +other dependencies installed at the time of calling `nox`. +""" from itertools import product import nox @@ -10,11 +15,15 @@ LOCATIONS = "src", "tests", "./noxfile.py", "docs/conf.py" PYTHON = "3.11" PYTHONS = ["3.11", "3.10", "3.9", "3.8", "3.7"] -SPACY_VERSION = "3.5.2" -SPACY_MYPY_VERSIONS = {SPACY_VERSION: PYTHONS, "3.1.7": PYTHONS} +SPACY_VERSION = "3.7.4" +SPACY_MYPY_VERSIONS = {SPACY_VERSION: PYTHONS, "3.2.6": PYTHONS} SPACY_TEST_VERIONS = {SPACY_VERSION: PYTHONS, "3.0.9": ["3.10", "3.9", "3.8", "3.7"]} +RAPIDFUZZ_VERSION = "3.4.0" RAPIDFUZZ_VERSIONS = { - "3.0.0": PYTHONS, + "3.6.2": ["3.11", "3.10", "3.9", "3.8"], + # rapidfuzz dropped Python 3.7 support at v3.5, but the spaczz + # locked version is v3.4, which still supports Python 3.7 like spaczz does. + RAPIDFUZZ_VERSION: PYTHONS, "2.15.1": PYTHONS, "1.9.1": ["3.10", "3.9", "3.8", "3.7"], } @@ -27,7 +36,7 @@ def isort(session: Session) -> None: """Run isort import formatter.""" args = session.posargs or LOCATIONS - session.run("poetry", "install", "--only", "isort", external=True) + session.run("poetry", "install", "--no-root", "--only", "isort", external=True) session.run("isort", *args) @@ -35,7 +44,7 @@ def isort(session: Session) -> None: def black(session: Session) -> None: """Run black code formatter.""" args = session.posargs or LOCATIONS - session.run("poetry", "install", "--only", "black", external=True) + session.run("poetry", "install", "--no-root", "--only", "black", external=True) session.run("black", *args) @@ -46,7 +55,7 @@ def black(session: Session) -> None: def lint(session: Session) -> None: """Lint using flake8.""" args = session.posargs or LOCATIONS - session.run("poetry", "install", "--only", "lint", external=True) + session.run("poetry", "install", "--no-root", "--only", "lint", external=True) session.run("flake8", *args) diff --git a/poetry.lock b/poetry.lock index a0257b0..4500ee7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. [[package]] name = "alabaster" version = "0.7.13" description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -12,58 +11,43 @@ files = [ {file = "alabaster-0.7.13.tar.gz", hash = "sha256:a27a4a084d5e690e16e01e03ad2b2e552c61a65469419b907243193de1a84ae2"}, ] -[[package]] -name = "appdirs" -version = "1.4.4" -description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" -optional = false -python-versions = "*" -files = [ - {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"}, - {file = "appdirs-1.4.4.tar.gz", hash = "sha256:7d5d0167b2b1ba821647616af46a749d1c653740dd0d2415100fe26e27afdf41"}, -] - [[package]] name = "appnope" -version = "0.1.3" +version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false -python-versions = "*" 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(>=3.0.0)", "tomli (>=0.2.0)", "typing (>=3.7.4)"] +all-strict = ["IPython (==7.10.0)", "IPython (==7.23.1)", "Pygments (==2.0.0)", "Pygments (==2.4.1)", "attrs (==19.2.0)", "colorama (==0.4.1)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.3.0)", "debugpy (==1.6.0)", "ipykernel (==5.2.0)", "ipykernel (==6.0.0)", "ipykernel (==6.11.0)", "ipython-genutils (==0.2.0)", "jedi (==0.16)", "jinja2 (==3.0.0)", "jupyter-client (==6.1.5)", "jupyter-client (==7.0.0)", "jupyter-core (==4.7.0)", "nbconvert (==6.0.0)", "nbconvert (==6.1.0)", "pyflakes (==2.2.0)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==6.2.5)", "pytest-cov (==3.0.0)", "tomli (==0.2.0)", "typing (==3.7.4)"] colors = ["Pygments", "Pygments", "colorama"] -jupyter = ["IPython", "IPython", "attrs", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert"] -optional = ["IPython", "IPython", "Pygments", "Pygments", "attrs", "colorama", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert", "pyflakes", "tomli"] -optional-strict = ["IPython (==7.10.0)", "IPython (==7.23.1)", "Pygments (==2.0.0)", "Pygments (==2.4.1)", "attrs (==19.2.0)", "colorama (==0.4.1)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.3.0)", "debugpy (==1.6.0)", "ipykernel (==5.2.0)", "ipykernel (==6.0.0)", "ipython-genutils (==0.2.0)", "jedi (==0.16)", "jinja2 (==3.0.0)", "jupyter-client (==6.1.5)", "jupyter-client (==7.0.0)", "jupyter-core (==4.7.0)", "nbconvert (==6.0.0)", "pyflakes (==2.2.0)", "tomli (==0.2.0)"] -runtime-strict = ["six (==1.11.0)"] -tests = ["codecov", "pytest", "pytest", "pytest", "pytest-cov", "typing"] +jupyter = ["IPython", "IPython", "attrs", "debugpy", "debugpy", "debugpy", "debugpy", "debugpy", "ipykernel", "ipykernel", "ipykernel", "ipython-genutils", "jedi", "jinja2", "jupyter-client", "jupyter-client", "jupyter-core", "nbconvert", "nbconvert"] +optional = ["IPython (>=7.10.0)", "IPython (>=7.23.1)", "Pygments (>=2.0.0)", "Pygments (>=2.4.1)", "attrs (>=19.2.0)", "colorama (>=0.4.1)", "debugpy (>=1.0.0)", "debugpy (>=1.0.0)", "debugpy (>=1.0.0)", "debugpy (>=1.3.0)", "debugpy (>=1.6.0)", "ipykernel (>=5.2.0)", "ipykernel (>=6.0.0)", "ipykernel (>=6.11.0)", "ipython-genutils (>=0.2.0)", "jedi (>=0.16)", "jinja2 (>=3.0.0)", "jupyter-client (>=6.1.5)", "jupyter-client (>=7.0.0)", "jupyter-core (>=4.7.0)", "nbconvert (>=6.0.0)", "nbconvert (>=6.1.0)", "pyflakes (>=2.2.0)", "tomli (>=0.2.0)"] +optional-strict = ["IPython (==7.10.0)", "IPython (==7.23.1)", "Pygments (==2.0.0)", "Pygments (==2.4.1)", "attrs (==19.2.0)", "colorama (==0.4.1)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.0.0)", "debugpy (==1.3.0)", "debugpy (==1.6.0)", "ipykernel (==5.2.0)", "ipykernel (==6.0.0)", "ipykernel (==6.11.0)", "ipython-genutils (==0.2.0)", "jedi (==0.16)", "jinja2 (==3.0.0)", "jupyter-client (==6.1.5)", "jupyter-client (==7.0.0)", "jupyter-core (==4.7.0)", "nbconvert (==6.0.0)", "nbconvert (==6.1.0)", "pyflakes (==2.2.0)", "tomli (==0.2.0)"] +tests = ["pytest (>=4.6.0)", "pytest (>=4.6.0)", "pytest (>=6.2.5)", "pytest-cov (>=3.0.0)", "typing (>=3.7.4)"] tests-binary = ["cmake", "cmake", "ninja", "ninja", "pybind11", "pybind11", "scikit-build", "scikit-build"] tests-binary-strict = ["cmake (==3.21.2)", "cmake (==3.25.0)", "ninja (==1.10.2)", "ninja (==1.11.1)", "pybind11 (==2.10.3)", "pybind11 (==2.7.1)", "scikit-build (==0.11.1)", "scikit-build (==0.16.1)"] -tests-strict = ["codecov (==2.0.15)", "pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==6.2.5)", "pytest-cov (==3.0.0)", "typing (==3.7.4)"] +tests-strict = ["pytest (==4.6.0)", "pytest (==4.6.0)", "pytest (==6.2.5)", "pytest-cov (==3.0.0)", "typing (==3.7.4)"] [[package]] name = "zipp" version = "3.15.0" description = "Backport of pathlib-compatible object wrapper for zip files" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -3341,4 +3376,4 @@ testing = ["big-O", "flake8 (<5)", "jaraco.functools", "jaraco.itertools", "more [metadata] lock-version = "2.0" python-versions = "^3.7" -content-hash = "617a9fa4720630604f6a9926859d4b6d7685f4cbadd463a176902a0d5cee01bb" +content-hash = "ccb186883ea185114918ea8b3f4d4b601756ea3d8dabd63d53376261da1b5e3b" diff --git a/pyproject.toml b/pyproject.toml index 687446d..de7bf2e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "spaczz" -version = "0.6.0" +version = "0.6.1" description = "Adds fuzzy matching and additional regex matching support to spaCy." license = "MIT" readme = "README.md" @@ -13,6 +13,10 @@ documentation = "https://spaczz.readthedocs.io" [tool.poetry.plugins."spacy_factories"] "spaczz_ruler" = "spaczz.pipeline:SpaczzRuler" +[build-system] +requires = ["poetry>=1.0.0"] +build-backend = "poetry.masonry.api" + # Dependencies [tool.poetry.dependencies] @@ -20,12 +24,6 @@ python = "^3.7" spacy = "^3.0" catalogue = "*" srsly = "*" -numpy = [ - {version = ">=1.15, <1.22", python = "~3.7"}, - {version = ">=1.17.3", python = "~3.8"}, - {version = ">=1.19.3", python = "~3.9"}, - {version = ">=1.21.2", python = "^3.10"} -] rapidfuzz = ">=1.0.0" regex = ">=2020.6.8" importlib_metadata = {version = "*", python = "<3.8"} @@ -51,10 +49,11 @@ flake8-bugbear = ">=22.4" flake8-docstrings = ">=1.6" flake8-import-order = ">=0.18" -## Typechecking +## Type-Checking [tool.poetry.group.mypy.dependencies] -mypy = ">=0.9" +mypy = ">=1.0" +# Below need to be installed for mypy to be able to type check them. nox = "*" pytest = "*" @@ -79,7 +78,10 @@ sphinx = ">=4.0.2" sphinx-autobuild = "*" sphinx-autodoc-typehints = "*" -# Other Tools +[tool.poetry.group.automation.dependencies] +nox = "*" + +# Config [tool.black] extend-exclude = ''' @@ -128,7 +130,3 @@ ignore_missing_imports = true [tool.pytest.ini_options] testpaths = ["tests"] - -[build-system] -requires = ["poetry>=1.0.0"] -build-backend = "poetry.masonry.api" diff --git a/tests/test_pipeline/test_spaczzruler.py b/tests/test_pipeline/test_spaczzruler.py index 82e18ca..828ef05 100644 --- a/tests/test_pipeline/test_spaczzruler.py +++ b/tests/test_pipeline/test_spaczzruler.py @@ -9,6 +9,7 @@ from spacy.language import Language from spacy.tokens import Doc from spacy.tokens import Span +from spacy.training import Example import srsly from spaczz.customtypes import RulerPattern @@ -478,7 +479,7 @@ def test_remove_unknown_ent_id_raises_error(ruler: SpaczzRuler) -> None: def test_initialize(ruler: SpaczzRuler) -> None: """It intializes the ruler without patterns.""" - ruler.initialize(lambda: [1, 2, 3]) + ruler.initialize(lambda: [Example(ruler.nlp("predicted"), ruler.nlp("reference"))]) assert len(ruler) == 0 @@ -486,5 +487,8 @@ def test_initialize_with_patterns( ruler: SpaczzRuler, patterns: ty.List[RulerPattern] ) -> None: """It initializes the ruler with patterns.""" - ruler.initialize(lambda: [1, 2, 3], patterns=patterns) + ruler.initialize( + lambda: [Example(ruler.nlp("predicted"), ruler.nlp("reference"))], + patterns=patterns, + ) assert len(ruler) == len(patterns) From ee0327a547b09a82cb53998cc8f4a238b100f000 Mon Sep 17 00:00:00 2001 From: Grant Andersen Date: Mon, 11 Mar 2024 18:05:26 -0500 Subject: [PATCH 2/3] Fixing coverage CI workflow. --- .github/workflows/coverage.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/coverage.yml b/.github/workflows/coverage.yml index 8f50ec8..af45e2d 100644 --- a/.github/workflows/coverage.yml +++ b/.github/workflows/coverage.yml @@ -9,12 +9,12 @@ jobs: - name: Setup Python uses: actions/setup-python@v3 with: - python-version: '3.10' + python-version: '3.11' architecture: x64 - name: Install Root Dependencies run: pip install nox poetry - name: Generate Coverage Report - run: nox --session "tests-3.10(spacy='3.5.2', rapidfuzz='3.0.0')" -- --cov --cov-report=xml + run: nox --session "tests-3.11(spacy='3.7.4', rapidfuzz='3.6.2')" -- --cov --cov-report=xml - name: Upload Coverage to Codecov uses: codecov/codecov-action@v3 with: From 3126e1eb38735b980b58ae9eb779bc3ffb943703 Mon Sep 17 00:00:00 2001 From: Grant Andersen Date: Mon, 11 Mar 2024 18:15:53 -0500 Subject: [PATCH 3/3] Optimizing version matrices in noxfile. --- noxfile.py | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/noxfile.py b/noxfile.py index 2ac0842..3b78552 100644 --- a/noxfile.py +++ b/noxfile.py @@ -16,16 +16,16 @@ PYTHON = "3.11" PYTHONS = ["3.11", "3.10", "3.9", "3.8", "3.7"] SPACY_VERSION = "3.7.4" -SPACY_MYPY_VERSIONS = {SPACY_VERSION: PYTHONS, "3.2.6": PYTHONS} -SPACY_TEST_VERIONS = {SPACY_VERSION: PYTHONS, "3.0.9": ["3.10", "3.9", "3.8", "3.7"]} +SPACY_MYPY_VERSIONS = {SPACY_VERSION: PYTHONS, "3.2.6": PYTHONS[1:]} +SPACY_TEST_VERIONS = {SPACY_VERSION: PYTHONS, "3.0.9": PYTHONS[1:]} RAPIDFUZZ_VERSION = "3.4.0" RAPIDFUZZ_VERSIONS = { - "3.6.2": ["3.11", "3.10", "3.9", "3.8"], + "3.6.2": PYTHONS[:-1], # rapidfuzz dropped Python 3.7 support at v3.5, but the spaczz # locked version is v3.4, which still supports Python 3.7 like spaczz does. RAPIDFUZZ_VERSION: PYTHONS, "2.15.1": PYTHONS, - "1.9.1": ["3.10", "3.9", "3.8", "3.7"], + "1.9.1": PYTHONS[1:], }