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How many draft assemblies should I need? #20

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xiekunwhy opened this issue Sep 23, 2021 · 1 comment
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How many draft assemblies should I need? #20

xiekunwhy opened this issue Sep 23, 2021 · 1 comment

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@xiekunwhy
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xiekunwhy commented Sep 23, 2021 •
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Hi,

I have hifi and hic data of a species, I want to know that how many draft assemblies should I need if I want to use GALA? 4 assemblies generated from hifi data using different tools (hifiasm, flye, wtdbg2, raven) are enough?

Best,
Kun
@mawad89
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mawad89 commented Oct 18, 2021 •
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Hi Kun,
Sorry for late responce it should be enough but maybe you will need to filtter the hifiasm contigs or use only big contigs (-c 50000:80000)
Best
Mohamed

@mawad89 mawad89 closed this as completed Mar 11, 2022
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@xiekunwhy @mawad89