Single Command Mode: `KeyError:...

[Ural-Yunusbaev]

Here I shared my files
https://drive.google.com/drive/folders/1CUCO74e_YArHYTAT92UdLcGiIgfPb9c-?usp=sharing

Another bug!
'[M::main] CMD: minimap2 -x asm5 /home/crciv/AcerChrAssemb/GALA/gala/new_genomes/new_draft_3.fa /home/crciv/AcerChrAssemb/GALA/gala/new_genomes/new_draft_2.fa
[M::main] Real time: 16.140 sec; CPU: 39.736 sec; Peak RSS: 1.634 GB
Traceback (most recent call last):
File "/home/crciv/soft/gala/gala", line 82, in <module>
scaffolding(path='comparison',number_of_drafts=number_of_drafts,block=block,percentage=percent,shortage_contig=contig,quality=qty,out_file=True,output_name=name,output=outpath)
File "/home/crciv/soft/gala/src/scaffolding.py", line 163, in scaffolding
for bas in a[e][ba]:
KeyError: 'Ctg8_pilon_1_awad'

If you can share the files in gala_results/gap_free_comp/comparison folder with me (I tried different data-sets but I don't see this error)

Originally posted by @mawad89 in #1 (comment)

[mawad89]

Thanks for sharing your data. It is a mapping issue but I considered it and solved in the new commit you can use it now.
Best wishes

[Ural-Yunusbaev]

Thanks, Mohamed!