Commits

Branch selector

 master

User selector

All users

All time

Commit History

Commits on Mar 30, 2016

• Removed outdated footnotes from vignette as the filtration algorithm was fixed. Also few examples simplyfied.

  jirihon

  committedMar 30, 2016
  743cd01

• Header paths fixed.

  jirihon

  committedMar 30, 2016
  96717e0

• Renamed header files to .h suffix.

  jirihon

  committedMar 30, 2016
  e57e89b

• Typo.

  jirihon

  committedMar 30, 2016
  e9f5152

• Version bump.

  jirihon

  committedMar 30, 2016
  5adea13

• Better filtration method for overlapping PQS.

  jirihon

  committedMar 30, 2016
  ec9e024

Commits on Mar 22, 2016

• Version bump.

  jirihon

  committedMar 22, 2016
  081458d

• Spelling fix.

  jirihon

  committedMar 22, 2016
  17bd473

Commits on Mar 21, 2016

• Vignette adapted to new default options.

  jirihon

  committedMar 21, 2016
  4fe125c

• New default options.

  jirihon

  committedMar 21, 2016
  ae0ce20

• Duplicate footnote "solution".

  jirihon

  committedMar 21, 2016
  f6c7e91

• Merge pull request #1 from jirihon/ML-patch-1

  jirihon

  committedMar 21, 2016
  ee802f2

• Added files via upload

  nomenia

  committedMar 21, 2016
  2a63ee4

• Updated brief package description.

  jirihon

  committedMar 21, 2016
  d153992

• Added vignette dependencies to Suggests.

  jirihon

  committedMar 21, 2016
  8a0f028

• Switched to hg38 in vignette.

  jirihon

  committedMar 21, 2016
  115fe98

• Vignette improvements by Matej.

  jirihon

  committedMar 21, 2016
  d4f5cbc

• New tetrad scoring: (#tetrads - 1) * tetrad_bonus.

  jirihon

  committedMar 21, 2016
  625bd0b

• Minimal score has to be positive value.

  jirihon

  committedMar 21, 2016
  52e3dea

Commits on Mar 19, 2016

• Added examples to score, strand and density methods as suggested by Bioc developers when we published triplex.

  jirihon

  committedMar 19, 2016
  326def8

• Vignette typo.

  jirihon

  committedMar 19, 2016
  3148a37

• Real world example.

  jirihon

  committedMar 19, 2016
  f69e2af

• Use order instead of sort.int.

  jirihon

  committedMar 19, 2016
  5ee8bd6

• Fix useDynLib.

  jirihon

  committedMar 19, 2016
  5b316a4

• Strand docu.

  jirihon

  committedMar 19, 2016
  9a7f855

• Catch regexp engine exception.

  jirihon

  committedMar 19, 2016
  19a2891

• Fix: only PQS with score >= min_score should be counted in the density vector, cached and printed in verbose mode.

  jirihon

  committedMar 19, 2016
  f8ec43b

• Removed unused code.

  jirihon

  committedMar 19, 2016
  72e87e8

• Progress on vignette.

  jirihon

  committedMar 19, 2016
  b76efb2

• Added support for strand option and by default searching on both strands.

  jirihon

  committedMar 19, 2016
  3a44f76

Commits on Mar 17, 2016

• Improved example plot.

  jirihon

  committedMar 17, 2016
  dbbc700

• Added NEWS file.

  jirihon

  committedMar 17, 2016
  10da015

• Gviz plot for real world example.

  jirihon

  committedMar 17, 2016
  1647f84

• Minor docu improvements.

  jirihon

  committedMar 17, 2016
  23be3e3

• Meeting R CMD check and BiocCheck requirements.

  jirihon

  committedMar 17, 2016
  59fd1f2

Pagination

PreviousNext