DeepSlides

This study is based on Tensorflow implementation of pix2pix.

if you want to download the image dataset, please click here

Tech

DeepSlides uses a number of open source projects to work properly:

[Python]
[Tensorflow]
[Numpy]

How to use:

Download and unzip trained network for ki67 stained breast cancer. (to "code\artificialKi67")
Please create a png file. (\Testdata\xxx.png)
The size of the square image should be 256*n X 256*n where n=1,2,3,...
Draw the possitive and negative cells with green and red colors respectively.
Also you can use yellow color to represent possitive cells with staining problem.
Run createTissue.py --scale_size image size (256*n)
note: Please be sure that images sizes are same in that folder.
note: Please be sure that the annotated cells' area are realistic for 40x magnification

example image:

output image:

Todos

Web based client GUI