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Issues list

error when running numbat::preprocess_allele in pileup_and_phase.R
#123 by rosaranli was closed Jun 6, 2023
2
Overwrite identifiers
#156 by SollyBunny was closed Jan 18, 2024
1
Cell Ranger Count Default Intronic Counting Impact
#155 by DarioS was closed Jan 21, 2024
1
cnv_state Column Description is Vague
#152 by DarioS was closed Jan 21, 2024
4
WASHU MM study Bioproject data not available
#149 by juniajvs was closed Nov 15, 2023
1
High ploidy cell lines
#144 by thomasveith was closed Jan 21, 2024
5
Troubleshoot Error - missing files in output directory
#141 by RaghadShu was closed Oct 6, 2023
1
Why is there so much LoH in the mouse data tutorial?
#139 by thomasveith was closed Oct 26, 2023
3
Issue about Interpretation of Results of the section Tumor phylogeny
#135 by sunshine1126 was closed Aug 11, 2023
2
No CNVs detected for tumor data
#134 by SirKuikka was closed Aug 15, 2023
4
analyse multiple samples from the same individual together to increase power
#129 by rosaranli was closed Jun 22, 2023
7
copynumber::pcf execution
#126 by wyt14 was closed May 29, 2023
1
Which CNV_state to use from the output?
#124 by aelhossiny was closed May 23, 2023
1
Where to find Eagle genetic_map_hg38_withX.txt.gz since the mirror is down?
#109 by EspressoKris was closed Mar 21, 2023
2
Error in mutate() while running numbat with snRNAseq data generated by Takara SMART-Seq Stranded Kit
#122 by xiaoxinchen2022 was closed Jun 10, 2023
3
Does Numbat filter cells out during giving posterior probabilities on single-cell level?
#120 by aelhossiny was closed May 9, 2023
1
Z States output
#119 by aelhossiny was closed May 9, 2023
1
Fail when running with target subset of regions
#118 by kokonech was closed May 8, 2023
1
Understanding Numbat results
#117 by acalcino was closed May 3, 2023
2
Issues visualizing CNV posterior in tSNE embedding using pagoda
#116 by bobbyshih was closed Apr 28, 2023
2
difference between subtrees and clones?
#115 by aelhossiny was closed Apr 28, 2023
2
Using numbat on multiple 10x visium spatial samples
#113 by spatialbiology1 was closed Apr 18, 2023
2
Error in mutate(., state = run_joint_hmm(pAD = pAD, DP = DP, p_s = p_s,
#112 by pcream was closed Apr 20, 2023
7
Running Numbat on cells coming from multiple samples
#111 by aelhossiny was closed Apr 28, 2023
1
Error in optim(fn = function(w) {: non-finite value supplied by optim
#110 by ccruizm was closed Apr 4, 2023
4
ProTip! What’s not been updated in a month: updated:<2024-06-06.