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Issues list

Error in if (UPGMA_score > NJ_score) bug Something isn't working
#68 opened Nov 28, 2022 by teng-gao
12
how to specify the number of clones in the bulk_clones_final.png and look at the allele frequency profile based on the specified number of clones
#133 opened Jul 11, 2023 by rosaranli
8
Subtrees disappear bug Something isn't working fixed Fixed in upcoming version
#150 opened Nov 29, 2023 by acalcino
7
Error in vectbl_assign(x[[j]], i, recycled_value[[j]]): DLL requires the use of native symbols
#197 opened Jul 19, 2024 by stela2502
6
Comparison to pseudobulk and sanity check of high major copy number documentation Improvements or additions to documentation
#194 opened Jul 1, 2024 by Nikki-Burdett
6
segfault, caught bus error, non-existent physical address
#188 opened May 13, 2024 by ahwanpandey
6
Phylogeny on merged samples
#130 opened Jun 23, 2023 by freddie090
6
Expecting loss but getting CNLoH
#93 opened Jan 12, 2023 by tinakeshav
6
bulk_clones plot "CNV state" legend colors
#182 opened Apr 9, 2024 by igordot
5
run_numbat() error unclear
#181 opened Apr 5, 2024 by cathalgking
5
error in evaluating the argument 'subject' in selecting a method for function 'findOverlaps': 'seqnames' cannot contain NAs
#165 opened Feb 17, 2024 by yulijia
5
Probabilities of each CNV state are missing in joint_post_2.tsv fixed Fixed in upcoming version
#146 opened Nov 1, 2023 by hxj5
5
singularity - Error in value
#161 opened Feb 1, 2024 by cathalgking
4
Error in run_numbat (dpoilog: all x must be integers)
#138 opened Sep 14, 2023 by RaghadShu
4
Combining multiple runs of pileup_and_phase script
#125 opened May 22, 2023 by ms3389
4
Settings for running on large number of cells
#104 opened Feb 14, 2023 by aranham
4
How to use numbat in other species with a phased genome? enhancement New feature or request
#174 opened Mar 9, 2024 by xinghua1001
3
Error: scheduled core X did not deliver a result
#160 opened Jan 30, 2024 by ArthurDondi
3
Performing comparative analysis of Numbat results across multiple patients
#142 opened Sep 23, 2023 by scg-dgist
3
How to re-run from the breakpoint enhancement New feature or request
#131 opened Jun 29, 2023 by daisyyr
3
Running numbat failed on large datasets: cannot allocate memory block of size 134217728 Tb
#83 opened Dec 26, 2022 by JikaiShao
3
Expression only version enhancement New feature or request
#43 opened Sep 20, 2022 by SaskiaFreytag
3
Account for WGD enhancement New feature or request
#36 opened May 30, 2022 by teng-gao
3
CNV calling from 10X 5 prime GEX data
#193 opened Jun 14, 2024 by cv55
2
Error: 'separate_longer_delim' is not an exported object from 'namespace:tidyr'
#190 opened May 24, 2024 by fahmadimoughari
2
ProTip! What’s not been updated in a month: updated:<2024-07-04.