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Commits on Jan 11, 2013

• compute D and D3 statistics

  lh3

  committedJan 11, 2013
  cc0f36a

Commits on Feb 28, 2012

• A D version of bc2rg (different from bc2rg.lua)

  lh3

  committedFeb 28, 2012
  196c7c8

Commits on Jan 22, 2012

• changeable run length

  

  Heng Li

  committedJan 22, 2012
  4612adf

• fixed a compiling bug

  

  Heng Li

  committedJan 22, 2012
  231a1a0

• print long homopolymer run

  

  Heng Li

  committedJan 22, 2012
  9d1f434

Commits on Jan 20, 2012

• add QUAL

  

  Heng Li

  committedJan 20, 2012
  d272ff0

• a quick script for masterVarBeta->VCF

  

  Heng Li

  committedJan 20, 2012
  fc5cb81

Commits on Jan 17, 2012

• fastq trimming; better revseq

  

  Heng Li

  committedJan 17, 2012
  ec85e1b

Commits on Jan 5, 2012

• barcode trimming; fastq conversion

  

  Heng Li

  committedJan 5, 2012
  e7dfb6a

Commits on Dec 30, 2011

• add revseq

  

  Heng Li

  committedDec 30, 2011
  17555be

Commits on Oct 23, 2011

• also parse treat qual clipping as soft clipping

  

  Heng Li

  committedOct 23, 2011
  e74a80d

• bugfix: wrongly compacted CIGAR

  

  Heng Li

  committedOct 23, 2011
  dd88d12

Commits on Sep 28, 2011

• added unpadded output

  

  Heng Li

  committedSep 28, 2011
  736f6d8

Commits on Sep 23, 2011

• simple ace2sam converter

  

  Heng Li

  committedSep 23, 2011
  e8db9de

Commits on Sep 1, 2011

• faster and more flexible fq2fa

  

  Heng Li

  committedSep 1, 2011
  dd1ac67

Commits on Aug 18, 2011

• change some printf() to putc/puts()

  

  Heng Li

  committedAug 18, 2011
  b186d92

• fixed a potential memory leak; drop ROBUST

  

  Heng Li

  committedAug 18, 2011
  9826653

• faster kseq

  

  Heng Li

  committedAug 18, 2011
  26f113c

• fixed a bug when outputing quality

  

  Heng Li

  committedAug 18, 2011
  d7712ad

Commits on Aug 12, 2011

• comp in specified regions

  

  Heng Li

  committedAug 12, 2011
  228847f

• added runit

  

  Heng Li

  committedAug 12, 2011
  28f87df

Commits on Jul 5, 2011

• in cutN, optionally output gap regions

  

  Heng Li

  committedJul 5, 2011
  6de1f9f

Commits on Jul 2, 2011

• fixed a bug

  

  Heng Li

  committedJul 2, 2011
  9b68e90

• improve BED parsing

  

  Heng Li

  committedJul 2, 2011
  4856204

• minor changes

  

  Heng Li

  committedJul 2, 2011
  cfc90c8

• also count C<=>G and A<=>T transversions

  

  Heng Li

  committedJul 2, 2011
  82acd21

• a small/useless converter

  

  Heng Li

  committedJul 2, 2011
  3148ece

Commits on Jun 27, 2011

• allow to apply the complement

  

  Heng Li

  committedJun 27, 2011
  dfaf1eb

Commits on Jun 24, 2011

• rewrote comp

  

  Heng Li

  committedJun 24, 2011
  fc5a67b

• add a complement mode

  

  Heng Li

  committedJun 24, 2011
  c4993fc

Commits on Jun 22, 2011

• convert emf2tab.pl output to fasta

  

  Heng Li

  committedJun 22, 2011
  18a7b92

• utility to process EPO alignment

  

  Heng Li

  committedJun 22, 2011
  72e587a

Commits on Jun 13, 2011

• convert TAB to space

  

  Heng Li

  committedJun 13, 2011
  0ca48f5

• updated README

  

  Heng Li

  committedJun 13, 2011
  3b97e9d

• concatenate sequences

  

  Heng Li

  committedJun 13, 2011
  9296b64

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