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NatureProtocols_step1.txt
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NatureProtocols_step1.txt
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#################################################
## Parameters for step 1 of the CUBIC Analysis ##
#################################################
#
#
# Note: to avoid any problem, please do not
# change the file structure, only the
# parameter values
#
#
###########
# Folders #
###########
#
# Folder containing the raw files
/Users/perrin2/Desktop/CUBIC/raw/
#
# Folder that will contain the NIfTI files
/Users/perrin2/Desktop/CUBIC/nii_individual/
#
# Folder for temporary files
/Users/perrin2/Desktop/CUBIC/temp/
#
#
#
##########
# Images #
##########
#
# Resolution of the TIFF images (XY direction, in mm)
0.00645
#
# Step in the Z direction (in mm)
0.01
#
#
#
###########
# Scaling #
###########
#
# Scaling factor (XY direction)
0.25
#
# Step factor (Z direction)
4
#
#
#
#########
# Files #
#########
#
# Position (in filename) that contains information about acquisition direction
21,23
#
# Position (in filename) that contains information about brain ID
9,12
#
# Position (in filename) that contains information about signal type
13,20
#
#
#
############
# Log file #
############
#
# Name of the output file (including full path)
/Users/perrin2/Desktop/CUBIC/logs/log_NatureProtocols_step1.txt
#
#
#
#########
## END ##
#########