From 2783ef848364eead14dd91d431753a5f0e5fb502 Mon Sep 17 00:00:00 2001 From: Victor Lin <13424970+victorlin@users.noreply.github.com> Date: Fri, 31 Mar 2023 10:12:56 -0700 Subject: [PATCH] fixup! Update changelog --- CHANGES.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGES.md b/CHANGES.md index 2f83e7d51..18fba9ae1 100644 --- a/CHANGES.md +++ b/CHANGES.md @@ -4,11 +4,12 @@ ### Major Changes -* `augur.io.read_metadata`: Previously, this supported any arbitrary delimiters for the metadata. It is now restricted to CSV and TSV, which are the officially supported formats for all Augur subcommands that use this function (export, filter, frequencies, refine, traits). [#812][] (@victorlin) +* `augur.io.read_metadata` (used by export, filter, frequencies, refine, and traits): Previously, this supported any arbitrary delimiters for the metadata. It is now restricted to CSV and TSV, which are the officially supported formats for all Augur subcommands that use this function. [#812][] (@victorlin) ### Features * Constrain `bcbio-gff` to >=0.7.0 and allow `Biopython` >=1.81 again. We had to introduce the `Biopython` constraint in v21.0.1 (see [#1152][]) due to `bcbio-gff` <0.7.0 relying on the removed `Biopython` feature `UnknownSeq`. [#1178][] (@corneliusroemer) +* `augur.io.read_metadata` (used by export, filter, frequencies, refine, and traits): Previously, this used the Python parser engine for [`pandas.read_csv()`][https://pandas.pydata.org/pandas-docs/version/1.5/reference/api/pandas.read_csv.html]. Updated to use the C engine for faster reading of metadata. [#812][] (@victorlin) ### Bug fixes @@ -20,6 +21,7 @@ [#1152]: https://github.com/nextstrain/augur/pull/1152 [#1171]: https://github.com/nextstrain/augur/issues/1171 [#1178]: https://github.com/nextstrain/augur/pull/1178 +[`pandas.read_csv()`]: https://github.com/nextstrain/augur/pull/1178 ## 21.1.0 (14 March 2023)