From 97cee791938b32ff6a29307b7c0809d995c9e34a Mon Sep 17 00:00:00 2001 From: John Huddleston Date: Thu, 31 Dec 2020 15:43:52 -0800 Subject: [PATCH] Add instructions to update conda prior to installation As with the main Nextstrain docs [1], the Augur docs need to mention how to update conda for users who have an older version installed. [1] https://github.com/nextstrain/docs.nextstrain.org/pull/41/commits/178a0829179848def908d9a8699cad359528ce8e --- docs/installation/installation.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/docs/installation/installation.md b/docs/installation/installation.md index c963ab713..468a15910 100644 --- a/docs/installation/installation.md +++ b/docs/installation/installation.md @@ -9,7 +9,15 @@ ## Using conda -Install [Miniconda](https://docs.conda.io/en/latest/miniconda.html). +[Install Miniconda with Python 3](https://docs.conda.io/en/latest/miniconda.html). +If you already have Miniconda installed with Python 2, download the latest Python 3 version and [follow conda's installation instructions](https://conda.io/projects/conda/en/latest/user-guide/install/index.html). +If you already have an older Miniconda version installed with Python 3, you may need to update your installation prior to installing Nextstrain's tools with: + +```sh +conda activate base +conda update conda +``` + Create a conda environment to install augur into and activate that environment. ```bash