From d158b73c1a42fa46bbc71d84f5becee27026f178 Mon Sep 17 00:00:00 2001
From: John Huddleston <huddlej@gmail.com>
Date: Fri, 21 Jan 2022 13:24:00 -0800
Subject: [PATCH] Repin major versions for required and full deps

Although we recently relaxed version pinning for development
dependencies [1], we still need to maintain major version limits for base
and full requirements to prevent unexpected issues when those
dependencies release new major versions. For example, a new major pandas
version has a potential to produce breaking changes.

[1] https://github.com/nextstrain/augur/pull/821
---
 setup.py | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/setup.py b/setup.py
index f78572b05..4de8ff07d 100644
--- a/setup.py
+++ b/setup.py
@@ -47,19 +47,19 @@
     package_data = {'augur': ['data/*']},
     python_requires = '>={}'.format('.'.join(str(n) for n in min_version)),
     install_requires = [
-        "bcbio-gff >=0.6.0",
+        "bcbio-gff >=0.6.0, ==0.6.*",
         "biopython >=1.67, !=1.77, !=1.78",
-        "jsonschema >=3.0.0",
+        "jsonschema >=3.0.0, ==3.*",
         "packaging >=19.2",
-        "pandas >=1.0.0",
-        "phylo-treetime",
-        "xopen >=1.0.1"
+        "pandas >=1.0.0, ==1.*",
+        "phylo-treetime ==0.8.*",
+        "xopen >=1.0.1, ==1.*"
     ],
     extras_require = {
         'full': [
-            "cvxopt >=1.1.9",
-            "matplotlib >=2.0",
-            "seaborn >=0.9.0"
+            "cvxopt >=1.1.9, ==1.*",
+            "matplotlib >=2.0, ==2.*",
+            "seaborn >=0.9.0, ==0.9.*"
         ],
         'dev': [
             "cram >=0.7",