From b0ca00e48e8f45b33fc44a0f46fdd052bcb127e3 Mon Sep 17 00:00:00 2001 From: james hadfield Date: Wed, 26 Feb 2020 13:47:22 +1300 Subject: [PATCH] rebuild docs --- docs/introduction/install.html | 6 +++++- docs/introduction/install/index.html | 6 +++++- docs/releases/changelog.html | 27 ++++++++++++++++++++++++--- docs/releases/changelog/index.html | 27 ++++++++++++++++++++++++--- 4 files changed, 58 insertions(+), 8 deletions(-) diff --git a/docs/introduction/install.html b/docs/introduction/install.html index e456a794c..51aa49a02 100644 --- a/docs/introduction/install.html +++ b/docs/introduction/install.html @@ -59,6 +59,10 @@ For best results, please use Node.js version 10.

We highly recommend using Conda to manage environments, i.e. use Conda to create an environment with Node.js installed where you can use Auspice. It's possible to use other methods, but this documentation presupposes that you have Conda installed.

+

To run package scripts, the bash shell and the env command need to be in your PATH. +You should already have them on Unix-like systems including Linux and macOS. +If you are working from Windows, you can run the installation under Git Bash, MSYS2, or Cygwin. +You can also use the Windows Subsystem Linux for a fuller Linux environment.

Create a Conda Environment

conda create --name auspice nodejs=10
 source activate auspice
@@ -100,4 +104,4 @@

Updating Auspice should only require pulling the new version from GitHub -- it shouldn't require any npm commands. You will, however, have to re-build Auspice whenever the client-related code has changed, via auspice build.

-
Last updated on 10/17/2019
← OverviewHow to Run Auspice →
\ No newline at end of file +
Last updated on 2/12/2020
← OverviewHow to Run Auspice →
\ No newline at end of file diff --git a/docs/introduction/install/index.html b/docs/introduction/install/index.html index e456a794c..51aa49a02 100644 --- a/docs/introduction/install/index.html +++ b/docs/introduction/install/index.html @@ -59,6 +59,10 @@ For best results, please use Node.js version 10.

We highly recommend using Conda to manage environments, i.e. use Conda to create an environment with Node.js installed where you can use Auspice. It's possible to use other methods, but this documentation presupposes that you have Conda installed.

+

To run package scripts, the bash shell and the env command need to be in your PATH. +You should already have them on Unix-like systems including Linux and macOS. +If you are working from Windows, you can run the installation under Git Bash, MSYS2, or Cygwin. +You can also use the Windows Subsystem Linux for a fuller Linux environment.

Create a Conda Environment

conda create --name auspice nodejs=10
 source activate auspice
@@ -100,4 +104,4 @@

Updating Auspice should only require pulling the new version from GitHub -- it shouldn't require any npm commands. You will, however, have to re-build Auspice whenever the client-related code has changed, via auspice build.

-
Last updated on 10/17/2019
← OverviewHow to Run Auspice →
\ No newline at end of file +
Last updated on 2/12/2020
← OverviewHow to Run Auspice →
\ No newline at end of file diff --git a/docs/releases/changelog.html b/docs/releases/changelog.html index 4bbbf1eb0..2a7eae0c3 100644 --- a/docs/releases/changelog.html +++ b/docs/releases/changelog.html @@ -1,4 +1,4 @@ -Changelog · Auspice

Changelog

version 2.5.4 - 2020/02/26

+
    +
  • Improve entropy blending on branches. See PR 898
    • +
  • Bugfix: temporal scale was poorly displayed when a second tree was displayed ("tangletrees"). See PR 910
    • +
  • Bugfix: CSV drag-and-drop now works again. See PR 904
    • +
+

version 2.5.3 - 2020/02/12

+
    +
  • Improve how we display mutations to distinguish between gaps & Ns, and to not show undetermined AAs. See PR 895
    • +
  • Improve mapbox attribution. See PR 894
    • +
  • Add windows-specific documentation See PR 893
    • +
+

version 2.5.2 - 2020/02/11

+
    +
  • Allow npm scripts to run on windows. See PR 868
    • +
  • Improve the zoom level for the map when automatically zooming to one (or very few) demes. See PR 891
    • +
+

version 2.5.1 - 2020/02/07

+
    +
  • Allow narrative markdown files to have CRLF line endings.
    • +
+

version 2.5.0 - 2020/02/05

  • Add URL query options to facilitate embedding nextstrain via an iframe. See PR 884
      @@ -839,4 +860,4 @@

      version 1.7.0 - 2017/10/17

      version - 2018/01/18

      -
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file +
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file diff --git a/docs/releases/changelog/index.html b/docs/releases/changelog/index.html index 4bbbf1eb0..2a7eae0c3 100644 --- a/docs/releases/changelog/index.html +++ b/docs/releases/changelog/index.html @@ -1,4 +1,4 @@ -Changelog · Auspice

Changelog

version 2.5.4 - 2020/02/26

+
    +
  • Improve entropy blending on branches. See PR 898
    • +
  • Bugfix: temporal scale was poorly displayed when a second tree was displayed ("tangletrees"). See PR 910
    • +
  • Bugfix: CSV drag-and-drop now works again. See PR 904
    • +
+

version 2.5.3 - 2020/02/12

+
    +
  • Improve how we display mutations to distinguish between gaps & Ns, and to not show undetermined AAs. See PR 895
    • +
  • Improve mapbox attribution. See PR 894
    • +
  • Add windows-specific documentation See PR 893
    • +
+

version 2.5.2 - 2020/02/11

+
    +
  • Allow npm scripts to run on windows. See PR 868
    • +
  • Improve the zoom level for the map when automatically zooming to one (or very few) demes. See PR 891
    • +
+

version 2.5.1 - 2020/02/07

+
    +
  • Allow narrative markdown files to have CRLF line endings.
    • +
+

version 2.5.0 - 2020/02/05

  • Add URL query options to facilitate embedding nextstrain via an iframe. See PR 884
      @@ -839,4 +860,4 @@

      version 1.7.0 - 2017/10/17

      version - 2018/01/18

      -
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file +
Last updated on 10/14/2019
← Converting a narrative to PDFAuspice Version 2.0 →
\ No newline at end of file