- 7 June 2024: Assign genotypes using Nextclade dataset and visualize on tree PR #36
- 9 May 2024: Create a N450 tree that can be used as part of a Nextclade dataset to assign genotypes to measles samples based on criteria outlined by the WHO PR #28
- 25 April 2024: Add specific sequences and metadata to the measles trees, including WHO reference sequences, vaccine strains, and genotypes reported on NCBI PR #26
- 10 April 2024: Add a single GH Action workflow to automate the ingest and phylogenetic workflows PR #22
- 2 April 2024: Add nextstrain-automation build-configs for deploying the final Auspice dataset of the phylogenetic workflow PR #21
- 1 April 2024: Create a "N450" tree using the 450 nucleotides encoding the carboxyl-terminal 150 amino acids of the nucleoprotein, which is highly represented on NCBI for measles. PR #20
- 15 March 2024: Connect ingest and phylogenetic workflows to follow the pathogen-repo-guide by uploading ingest output to S3, downloading ingest output from S3 to phylogenetic directory, using "accession" column as the ID column, and using a color scheme that matches the new region name format. PR #19
- 1 March 2024: Add phylogenetic directory to follow the pathogen-repo-guide, and update the CI workflow to match the new file structure. PR #18
- 14 February 2024: Add ingest directory from pathogen-repo-guide and make measles-specific modifications. PR #10
- 11 January 2024: Use a config file to define hardcoded parameters and file paths, and add a change log. PR #9