rebuild-hmpxv1.yaml

name: Rebuild hmpxv1

on:
  repository_dispatch:
    types:
      - rebuild
      - rebuild_hmpxv1

  workflow_dispatch:
    inputs:
      trial_name:
        description: "If set, result will be at nextstrain.org/staging/trial/trial_name/mpox/mpxv"
        required: false
      image:
        description: 'Specific container image to use for build (will override the default of "nextstrain build")'
        required: false

env:
  TRIAL_NAME: ${{ github.event.inputs.trial_name }}
  NEXTSTRAIN_DOCKER_IMAGE: ${{ github.event.inputs.image }}

jobs:
  rebuild_hmpxv1:
    permissions:
      id-token: write
    uses: nextstrain/.github/.github/workflows/pathogen-repo-build.yaml@master
    secrets: inherit
    with:
      runtime: aws-batch
      env: |
        NEXTSTRAIN_DOCKER_IMAGE: ${{ inputs.image }}
        GITHUB_RUN_ID: ${{ github.run_id }}
        SLACK_CHANNELS: ${{ vars.SLACK_CHANNELS }}
        BUILD_DIR: phylogenetic
        BUILD_NAME: hmpxv1
      run: |
        nextstrain build \
          --detach \
          --no-download \
          --cpus 8 \
          --memory 32gib \
          --env AWS_ACCESS_KEY_ID \
          --env AWS_SECRET_ACCESS_KEY \
          --env GITHUB_RUN_ID \
          --env SLACK_TOKEN \
          --env SLACK_CHANNELS \
          . \
            notify_on_deploy \
            --configfiles $BUILD_DIR/config/$BUILD_NAME/config.yaml $BUILD_DIR/config/nextstrain_automation.yaml \
            --config auspice_prefix=$TRIAL_NAME --directory $BUILD_DIR --snakefile $BUILD_DIR/Snakefile