diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml
index 12ce718..1598935 100644
--- a/.github/workflows/ci.yaml
+++ b/.github/workflows/ci.yaml
@@ -18,7 +18,7 @@ jobs:
       run: |
         nextstrain build \
           phylogenetic \
-          --configfile profiles/ci/profiles_config.yaml
+          --configfile build-configs/ci/profiles_config.yaml
       artifact-name: output-${{ matrix.runtime }}
       artifact-paths: |
         phylogenetic/auspice/
diff --git a/phylogenetic/profiles/ci/copy_example_data.smk b/phylogenetic/build-configs/ci/copy_example_data.smk
similarity index 100%
rename from phylogenetic/profiles/ci/copy_example_data.smk
rename to phylogenetic/build-configs/ci/copy_example_data.smk
diff --git a/phylogenetic/profiles/ci/profiles_config.yaml b/phylogenetic/build-configs/ci/profiles_config.yaml
similarity index 100%
rename from phylogenetic/profiles/ci/profiles_config.yaml
rename to phylogenetic/build-configs/ci/profiles_config.yaml