From 7377e53719dcae907701726ccf761df86639a811 Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Wed, 28 Feb 2024 15:08:13 -0800 Subject: [PATCH] For CI config files, we will use the directory "build-configs" instead of "profiles". This is consistent with the pathogen-repo-guide. https://github.com/nextstrain/pathogen-repo-guide/tree/5509de0e315eb6acae513d2df4dfab874ff289b5/phylogenetic/build-configs/ci However, note that the `ingest/profiles` does not need to be renamed because it's actually using the Snakemake Profiles feature. https://github.com/snakemake-profiles/doc --- .github/workflows/ci.yaml | 2 +- .../{profiles => build-configs}/ci/copy_example_data.smk | 0 .../{profiles => build-configs}/ci/profiles_config.yaml | 0 3 files changed, 1 insertion(+), 1 deletion(-) rename phylogenetic/{profiles => build-configs}/ci/copy_example_data.smk (100%) rename phylogenetic/{profiles => build-configs}/ci/profiles_config.yaml (100%) diff --git a/.github/workflows/ci.yaml b/.github/workflows/ci.yaml index 12ce718..1598935 100644 --- a/.github/workflows/ci.yaml +++ b/.github/workflows/ci.yaml @@ -18,7 +18,7 @@ jobs: run: | nextstrain build \ phylogenetic \ - --configfile profiles/ci/profiles_config.yaml + --configfile build-configs/ci/profiles_config.yaml artifact-name: output-${{ matrix.runtime }} artifact-paths: | phylogenetic/auspice/ diff --git a/phylogenetic/profiles/ci/copy_example_data.smk b/phylogenetic/build-configs/ci/copy_example_data.smk similarity index 100% rename from phylogenetic/profiles/ci/copy_example_data.smk rename to phylogenetic/build-configs/ci/copy_example_data.smk diff --git a/phylogenetic/profiles/ci/profiles_config.yaml b/phylogenetic/build-configs/ci/profiles_config.yaml similarity index 100% rename from phylogenetic/profiles/ci/profiles_config.yaml rename to phylogenetic/build-configs/ci/profiles_config.yaml