From b6d3ccbc1e60556bee39daa3e90ddb4239d0578b Mon Sep 17 00:00:00 2001 From: Jennifer Chang Date: Thu, 1 Feb 2024 14:55:11 -0800 Subject: [PATCH] Update the phylogenetic data url to match ingest data url The phylogenetic data url was updated to match the ingest data url from https://github.com/nextstrain/zika/blob/c0b9a6d38af405324c968aed9922cc2b3d136db2/ingest/config/optional.yaml#L7 --- phylogenetic/rules/prepare_sequences.smk | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/phylogenetic/rules/prepare_sequences.smk b/phylogenetic/rules/prepare_sequences.smk index 2a11420..2ef99b7 100644 --- a/phylogenetic/rules/prepare_sequences.smk +++ b/phylogenetic/rules/prepare_sequences.smk @@ -27,8 +27,8 @@ rule download: sequences = "data/sequences.fasta.zst", metadata = "data/metadata.tsv.zst" params: - sequences_url = "https://data.nextstrain.org/files/zika/sequences.fasta.zst", - metadata_url = "https://data.nextstrain.org/files/zika/metadata.tsv.zst" + sequences_url = "https://data.nextstrain.org/files/workflows/zika/sequences.fasta.zst", + metadata_url = "https://data.nextstrain.org/files/workflows/zika/metadata.tsv.zst" shell: """ curl -fsSL --compressed {params.sequences_url:q} --output {output.sequences}