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Term labels with article reference #1583

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drseb opened this issue Apr 12, 2020 · 1 comment
Open

Term labels with article reference #1583

drseb opened this issue Apr 12, 2020 · 1 comment
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@drseb
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drseb commented Apr 12, 2020

Hi,

I see several terms where the labels looks like this. Are the labels intentional?

name: Hadjikhani et al. (1998) visuotopic area V8
synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT [BIRNLEX:4061]
synonym: "Hadjikhani et al. (1998) visuotopic area v8" EXACT HUMAN_PREFERRED [BIRNLEX:4061]
xref: BIRNLEX:4061
is_a: UBERON:0026765 {source="NIFSTD"} ! Hadjikhani et al. (1998) visuotopic partition scheme region

[Term]
id: UBERON:0028412
name: Ongur, Price, and Ferry (2003) area 10p
synonym: "ongur, price, and ferry (2003) area 10p" EXACT [BIRNLEX:4067]
synonym: "ongur, price, and ferry (2003) area 10p" EXACT HUMAN_PREFERRED [BIRNLEX:4067]
xref: BIRNLEX:4067
is_a: UBERON:0026777 {source="NIFSTD"} ! Ongur, Price, and Ferry (2003) prefrontal cortical partition scheme region
@cmungall
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yes they are. these came from birnlex which is a predecessor of nifstd.

ideally you could just follow the provenance on the synonyms and find out more... but doubt birnlex is even resolvable any more.

@tgbugs @dosumis what should we do here?

  • I think some of these may be better represented outside uberon, this depends on our overall strategy for atlases, ccfs, etc
  • in the interim are there better IDs/xrefs to use here?
  • what's a good interim source of documentation here? I'd like to put a page on the uberon wiki describing these classes
  • we could at least put these in a subset so that people can filter in the interim

We need to flatten the provenance chain for these as

@drseb drseb added the review label May 11, 2020
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