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Commits on Mar 29, 2011

• fasta: dump_fasta

  

  Toshiro Nishimura

  committedMar 29, 2011
  8ea06f1

• genome_diff/patch. same format

  

  Toshiro Nishimura

  committedMar 29, 2011
  fdd2fee

• split_on_mismatches_2.pl - write errors to .error file.

  

  Toshiro Nishimura

  committedMar 29, 2011
  cfce9f3

• eliminate donedir feature in launch.pm... more problems than solutions

  

  Toshiro Nishimura

  committedMar 29, 2011
  c923f7d

• split_on_mismatches_2.pl: make --coord matching optional

  

  Toshiro Nishimura

  committedMar 29, 2011
  f1da59a

• split_on_mismatches_2.pl: fix

  

  Toshiro Nishimura

  committedMar 29, 2011
  48f1f2f

• split_on_mismatches_2.pl-- check coordinates as well

  

  Toshiro Nishimura

  committedMar 29, 2011
  432254c

Commits on Mar 28, 2011

• ratio.pl args/docs

  

  Toshiro Nishimura

  committedMar 28, 2011
  e120767

• --force option in ratio fixed again

  

  Toshiro Nishimura

  committedMar 28, 2011
  51d3bd1

• --force option in ratio fixed

  

  Toshiro Nishimura

  committedMar 28, 2011
  1950ee6

• genome_diff.pl

  

  Toshiro Nishimura

  committedMar 28, 2011
  da9bdb7

• added --force to ratio.pl, split_ratio.pl add file names.

  

  Toshiro Nishimura

  committedMar 28, 2011
  4cbec25

• launch fixed.... but not sure what the behavior should be when plaunch process fails

  

  Toshiro Nishimura

  committedMar 28, 2011
  182ba5c

• split_ratio.pl minor adjustment

  

  Toshiro Nishimura

  committedMar 28, 2011
  1abd6fc

• split_ratio.pl completed

  

  Toshiro Nishimura

  committedMar 28, 2011
  5763637

• split_ratio.pl

  

  Toshiro Nishimura

  committedMar 28, 2011
  81df372

Commits on Mar 25, 2011

• convert.pl: only allow g2a c2t

  

  Toshiro Nishimura

  committedMar 25, 2011
  7ea915d

• lib/GFF update. bring tests back up to date

  

  Toshiro Nishimura

  committedMar 25, 2011
  acc2a19

• major... building pipe line for bs-seq parent imprinting

  

  Toshiro Nishimura

  committedMar 25, 2011
  ccdadbc

Commits on Mar 24, 2011

• Launch.pm

  

  Toshiro Nishimura

  committedMar 24, 2011
  aaa60ea

• minor adjustment to bs-seq.pl docs

  

  Toshiro Nishimura

  committedMar 24, 2011
  7aadce7

• index.pod updated to include linux

  

  Toshiro Nishimura

  committedMar 24, 2011
  133d63f

• bs-seq.pl docs + examples

  

  Toshiro Nishimura

  committedMar 24, 2011
  c802dae

Commits on Mar 21, 2011

• some docs/comments added

  

  Toshiro Nishimura

  committedMar 21, 2011
  f185285

• lib/Fasta.pm expanded for conversions

  

  Toshiro Nishimura

  committedMar 21, 2011
  9d82912

Commits on Mar 17, 2011

• split_on_mismatch.pl: save original as .orig

  

  Toshiro Nishimura

  committedMar 17, 2011
  9f2f381

Commits on Mar 10, 2011

• make_intron_gff.pl

  

  Toshiro Nishimura

  committedMar 10, 2011
  37acba8

Commits on Mar 8, 2011

• forgot to push 0.0.19 meta changes

  

  Toshiro Nishimura

  committedMar 8, 2011
  fddc691

Commits on Feb 28, 2011

• Merge branch 'master' of ssh://dzlab/dzlab-tools

  tnish

  committedFeb 28, 2011
  4435f61

• in overlaps_gff.pl, add annotation's ID to output when in --full

  tnish

  committedFeb 28, 2011
  1500a95

• 0.0.18- fastq_trim.pl

  

  Toshiro Nishimura

  committedFeb 28, 2011
  cad0641

• fastq_trim.pl

  tnish

  committedFeb 28, 2011
  c564adb

Commits on Feb 25, 2011

• 0.0.17

  

  Toshiro Nishimura

  committedFeb 25, 2011
  1aba5f2

• filter_ends.pl: missing options added

  

  Toshiro Nishimura

  committedFeb 25, 2011
  ae80283

• minor fix to window_gff.pl. 0.0.16

  

  Toshiro Nishimura

  committedFeb 25, 2011
  825cb92

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