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Commits on Dec 4, 2021

• Add better error messages for CIGAR-related problems

  rrwick

  committedDec 4, 2021
  6747428

Commits on Nov 25, 2021

• Refine insert size filter

  rrwick

  committedNov 25, 2021
  6321765

• Fix spacing in copyright

  rrwick

  committedNov 25, 2021
  9d418ba

• Fix bug with unaligned reads

  rrwick

  committedNov 25, 2021
  da00ea9

• Implement insert size filter in Polypolish

  rrwick

  committedNov 25, 2021
  11cac97

• Working on read filter script

  rrwick

  committedNov 25, 2021
  384b071

• Use latest version of clap

  rrwick

  committedNov 25, 2021
  91852d9

• Starting work on read filter script

  rrwick

  committedNov 25, 2021
  e061071

Commits on Oct 18, 2021

• Add paper link

  rrwick

  committedOct 18, 2021
  70bebda

Commits on Aug 29, 2021

• New too-close strategy: invalid fraction of depth

  rrwick

  committedAug 29, 2021
  6c6212a

Commits on Aug 3, 2021

• Edit help text

  rrwick

  committedAug 3, 2021
  eb53203

• Bump version

  rrwick

  committedAug 3, 2021
  51c2162

• Add --min_ratio option

  rrwick

  committedAug 3, 2021
  5741c41

• Bump version

  rrwick

  committedAug 3, 2021
  f4b34c0

• Don't change bases with total depth below --min_depth

  rrwick

  committedAug 3, 2021
  0e5532d

Commits on Jul 27, 2021

• Use unreachable! macro

  rrwick

  committedJul 27, 2021
  c5ad983

Commits on Jul 26, 2021

• Transparent logo appropriate for light/dark themes

  rrwick

  committedJul 26, 2021
  418a005

• Add more whitespace around logo

  rrwick

  committedJul 26, 2021
  0621f0f

Commits on Jul 24, 2021

• Fix singular/plural in position(s)

  rrwick

  committedJul 24, 2021
  77dc20c

Commits on Jul 23, 2021

• Add Travis CI badge

  rrwick

  committedJul 23, 2021
  6ee95b5

• Add Travis CI yaml

  rrwick

  committedJul 23, 2021
  693c26a

• Add logo

  rrwick

  committedJul 23, 2021
  5db29a0

• Reordering

  rrwick

  committedJul 23, 2021
  560e5c0

• Add some tests

  rrwick

  committedJul 23, 2021
  7bea55b

• Code formatting

  rrwick

  committedJul 23, 2021
  d0c5d8f

• Fix --version

  rrwick

  committedJul 23, 2021
  3b624ab

Commits on Jul 22, 2021

• Fix time formatting bug

  rrwick

  committedJul 22, 2021
  d12dc25

• Fix bug with unaligned reads

  rrwick

  committedJul 22, 2021
  c32ecdc

• Preallocate space for expanded CIGAR

  rrwick

  committedJul 22, 2021
  c1db4c2

• Pass read bases as indices

  rrwick

  committedJul 22, 2021
  1926ce1

• Hard-coded counting of most common bases

  rrwick

  committedJul 22, 2021
  749ec5f

• Ignore flamegraph file

  rrwick

  committedJul 22, 2021
  8a8c580

• Switch to u32 type as appropriate

  rrwick

  committedJul 22, 2021
  bafa6ef

• Allocate vector with capacity for performance

  rrwick

  committedJul 22, 2021
  484551b

Commits on Jul 21, 2021

• Change uppercase code

  rrwick

  committedJul 21, 2021
  cd42fdf

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